Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A17 F48 I1 R1
|
90 |
35.3 |
1199032 |
98.5% |
1181046 |
139.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,044,135 |
G→T |
intergenic (+91/‑64) |
dsbA → / → yihF |
thiol:disulfide oxidoreductase DsbA/uncharacterized protein YihF |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,044,135 | 0 | G | T | 100.0%
| 79.2
/ NA
| 24 | intergenic (+91/‑64) | dsbA/yihF | thiol:disulfide oxidoreductase DsbA/uncharacterized protein YihF |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (11/13); total (11/13) |
TCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGAATATTTATATGATACGTAAGTCAGCTACAGGTGTTATTGTTGCGTTAGCCGTAATCTGGGGTGGTGGCACATGGTA > NC_000913/4043999‑4044266
|
tCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCTCTg < 1:485236/140‑1 (MQ=255)
tGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCTCTGGACattatt > 1:24205/1‑140 (MQ=255)
cAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCTCTGGACATTATTTCAGCATa > 1:593778/1‑140 (MQ=255)
agaAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCTCTGGACATTATTTCAGCATAAGTGGATATTCAAAGttt > 1:510714/1‑140 (MQ=255)
gaAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCTCTGGACATTATTTCAGCATAAGTGGATATTCAAAGtttt < 2:441701/140‑1 (MQ=255)
ttCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCTCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTAt < 2:593778/140‑1 (MQ=255)
ttCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCTCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTAt > 1:594246/1‑140 (MQ=255)
aTGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCTCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAgg < 1:248169/140‑1 (MQ=255)
ttACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCTCTGGACATTATTTCAGCATAAGTGGATATGCAAAGTTTTGCTGTTTTATCAGGGAATAtt < 1:238647/140‑1 (MQ=255)
aTAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCTCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGAATATTtata > 2:140745/1‑140 (MQ=255)
tAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCTCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGAATATTTatat < 1:216238/140‑1 (MQ=255)
aaTATTCACGGGCTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCTCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGAATATTTATATGATACGTAAGt < 1:117553/140‑1 (MQ=255)
atatTCACGGGCTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCTCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGAATATTTATATGATACGTAAGTc < 1:145603/140‑1 (MQ=255)
ggCTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCTCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGAATATTTATATGATACGTAAGTCAGCTACAgt > 2:154758/1‑139 (MQ=255)
tattatTTAATAAATATAAATACATTCTGATAATGCATCCTGCCTCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGAATATTTATATGATACGTAAGTCAGCTACAGGTGTTAttgt < 2:594246/140‑1 (MQ=255)
ttattTAATAAATATAAATACATTCTGATAATGCATCCTGCCTCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGAATATTTATATGATACGTAAGTCAGCTACAGGTGTTAttgttg > 1:290739/1‑140 (MQ=255)
ttattTAATAAATATAAATACATTCTGATAATGCATCCTGCCTCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGAATATTTATATGATACGTAAGTCAGCTACAGGTGTTAttgttg > 2:82033/1‑140 (MQ=255)
attTAATAAATATAAATACATTCTGATAATGCATCCTGCCTCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGAATATTTATATGATACGTAAGTCAGCTACAGGTGTTATTGTTGCg > 1:247019/1‑140 (MQ=255)
tttAATAAATATAAATACATTCTGATAATGCATCCTGCCTCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGAATATTTATATGATACGTAAGTCAGCTACAGGTGTTATTGTTGCGt < 1:154758/140‑1 (MQ=255)
ttCTGATAATGCATCCTGCCTCTGGACATTATTTCAGCACAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGAATATTTATATGATACGTAAGTCAGCTACAGGTGTTATTGTTGCGTTAGCCGTAATCTGGggtgg > 2:404422/1‑140 (MQ=255)
tCTGATAATGCATCCTGCCTCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGAATATTTATATGATACGTAAGTCAGCTACAGGTGTTATTGTTGCGTTAGCCGTAATCTGGggtggt > 1:545543/1‑140 (MQ=255)
aaTGCATCCTGCCTCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGAATATTTATATGATACGTAAGTCAGCTACAGGTGTTATTGTTGCGTTAGCCGTAATCTGGGGTGGTGGcaca < 2:24205/140‑1 (MQ=255)
aaTGCATCCTGCCTCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGAATATTTATATGATACGTAAGTCAGCTACAGGTGTTATTGTTGCGTTAGCCGTAATCTGGGGTGGTGGcaca < 1:147291/140‑1 (MQ=255)
aTCCTGCCTCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGAATATTTATATGATACGTAAGTCAGCTACAGGTGTTATTGTTGCGTTAGCCGTAATCTGGGGTGGTGGCACATGGTa < 1:185853/140‑1 (MQ=255)
|
TCAGCAGTATGCTGATACAGTGAAATATCTGTCCGAGAAAAAATAATTCAATGTAAATTACATAAAGCCCGTGAATATTCACGGGCTTTTTTTATTATTTAATAAATATAAATACATTCTGATAATGCATCCTGCCGCTGGACATTATTTCAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTATCAGGGAATATTTATATGATACGTAAGTCAGCTACAGGTGTTATTGTTGCGTTAGCCGTAATCTGGGGTGGTGGCACATGGTA > NC_000913/4043999‑4044266
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
