Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A13 F48 I1 R1	62	147.6	5031800	99.1%	4986513	139.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,083,215	C→A	G195C (GGC→TGC)	speB ←	agmatinase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,083,215	0	C	A	99.4%	567.5 / ‑5.5	157	G195C (GGC→TGC)	speB	agmatinase
Reads supporting (aligned to +/- strand): ref base C (0/1); new base A (62/94); total (62/95)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 160 total aligned reads displayed.

GGTGCAAAAGCAGGATCCAGGCAGTCGATATCAAAAGTCAGGTAAACCGGCATATCACCCACAATCTGTTTCACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCCGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGGCGCGGTATAGAACATAGTGCCGTGGTCAAATTCACAACCGTTCGCATAGGTATCGGTGTGGGCG  >  NC_000913/3083079‑3083351

ggTGCAAAAGCAGGATCCAGGCAGTCGATATCAAAAGTCAGGTAAACCGGCATATCACCCACAATCTGTTTCACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGtt                                                                                                                                       <  2:2074592/140‑1 (MQ=255)

  tGCAAAAGCAGGATCCAGGCAGTCGATATCAAAAGTCAGGTAAACCGGCATATCACCCACAATCTGTTTCACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGt                                                                                                                                     >  2:1157378/1‑140 (MQ=255)

  tGCAAAAGCAGGATCCAGGCAGTCGATATCAAAAGTCAGGTAAACCGGCATATCACCCACAATCTGTTTCACTTGGGCGATAACGTCAACCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGt                                                                                                                                     <  2:1425982/140‑1 (MQ=255)

      aaaGCAGGATCCAGGCAGTCGATATCAAAAGTCAGGTAAACCGGCATATCACCCACAATCTGTTTCACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCttt                                                                                                                                 >  1:2385361/1‑140 (MQ=255)

            ggATCCAGGCAGTCGATATCAAAAGTCAGGTAAACCGGCATATCACCCACAATCTGTTTCACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCaaa                                                                                                                           <  2:234758/140‑1 (MQ=255)

            ggATCCAGGCAGTCGATATCAAAAGTCAGGTAAACCGGCATATCACCCACAATCTGTTTCACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCaaa                                                                                                                           <  2:1812818/140‑1 (MQ=255)

            agATCCAGGCAGTCGATATCAAAAGTCAGGTAAACCGGCATATCACCCACAATCTGTTTCACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCaaa                                                                                                                           <  2:706580/139‑1 (MQ=255)

                  aGGCAGTCGATATCAAAAGTCAGGTAAACCGGCATATCACCCACAATCTGTTTCACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGt                                                                                                                     <  2:596202/140‑1 (MQ=255)

                   ggCAGTCGATATCAAAAGTCAGGTAAACCGGCATATCACCCACAATCTGTTTCACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTa                                                                                                                    >  2:1840415/1‑140 (MQ=255)

                   ggCAGTCGATATCAAAAGTCAGGTAAACCGGCATATCACCCACAATCTGTTTCACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTa                                                                                                                    >  2:1772645/1‑140 (MQ=255)

                   ggCAGTCGATATCAAAAGTCAGGTAAACCGGCATATCACCCACAATCTGTTTCACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTa                                                                                                                    >  1:1070266/1‑140 (MQ=255)

                    gCAGTCGATATCAAAAGTCAGGTAAACCGGCATATCACCCACAATCTGTTTCACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTAc                                                                                                                   <  2:2332177/140‑1 (MQ=255)

                        tCGATATCAAAAGTCAGGTAAACCGGCATATCACCCACAATCTGTTTCACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAAt                                                                                                               >  2:75019/1‑140 (MQ=255)

                        tCGATATCAAAAGTCAGGTAAACCGGCATATCACCCACAATCTGTTTCACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAAt                                                                                                               >  1:959391/1‑140 (MQ=255)

                        tCGATATCAAAAGTCAGGTAAACCGGCATATCACCCACAATCTGTTTCACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAAt                                                                                                               >  1:2448538/1‑140 (MQ=255)

                         cGATATCAAAAGTCAGGTAAACCGGCATATCACCCACAATCTGTTTCACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATa                                                                                                              >  2:503269/1‑140 (MQ=255)

                         cGATATCAAAAGTCAGGTAAACCGGCATATCACCCACAATCTGTTTCACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATa                                                                                                              <  2:1207717/140‑1 (MQ=255)

                         agATATCAAAAGTCAGGTAAACCGGCATATCACCCACAATCTGTTTCACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATa                                                                                                              <  2:1460192/139‑1 (MQ=255)

                              tCAAAAGTCAGGTAAACCGGCATATCACCCACAATCTGTTTCACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAAt                                                                                                         <  2:255306/140‑1 (MQ=255)

                                  aaGTCAGGTAAACCGGCATATCACCCACAATCTGTTTCACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGc                                                                                                     <  1:1615449/140‑1 (MQ=255)

                                  aaGTCAGGTAAACCGGCATATCACCCACAATCTGTTTCACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGc                                                                                                     >  1:1299383/1‑140 (MQ=255)

                                   aGTCAGGTAAACCGGCATATCACCCTCAATCTGTTTCACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCTATCTGcc                                                                                                    <  2:884278/140‑2 (MQ=255)

                                   aGTCAGGTAAACCGGCATATCACCCACAATCTGTTTCACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCa                                                                                                    <  1:1410307/140‑1 (MQ=255)

                                       aGGTAAACCGGCATATCTCCCACAATCTGTTTCACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATGCCAATCTGCACGGa                                                                                                <  2:2162549/140‑1 (MQ=255)

                                       aGGTAAACCGGCATATCACCCACAATCTGTTTCACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGa                                                                                                <  1:17582/140‑1 (MQ=255)

                                       aGGTAAACCGGCATATCACCCACAATCTGTTTCACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGa                                                                                                <  2:2385361/140‑1 (MQ=255)

                                       aGGTAAACCGGCATATCACCCACAATCTGTTTCACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGa                                                                                                <  2:1662248/140‑1 (MQ=255)

                                       aGGTAAACCGGCATATCACCCACAATCTGTTTCACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGa                                                                                                >  1:463281/1‑140 (MQ=255)

                                                 gCATATCACCCACAATCTGTTTCACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCggg                                                                                      <  1:438952/140‑1 (MQ=255)

                                                 gCATATCACCCACAATCTGTTTCACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCggg                                                                                      >  2:820465/1‑140 (MQ=255)

                                                    tatCACCCACAATCTGTTTCACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCg                                                                                   >  1:1002058/1‑140 (MQ=255)

                                                    tatCACCCACAATCTGTTTCACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCg                                                                                   <  1:1428494/140‑1 (MQ=255)

                                                       cACCCACAATCTGTTTCACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATc                                                                                >  1:299379/1‑140 (MQ=255)

                                                           cacaATCTGTTTCACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGAc                                                                            >  1:1409399/1‑140 (MQ=255)

                                                            acaATCTGTTTCACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGAcc                                                                           >  2:1743486/1‑140 (MQ=255)

                                                            acaATCTGTTTCACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGAcc                                                                           >  1:188680/1‑140 (MQ=255)

                                                               aTCTGTTTCTCTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGTCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACcttc                                                                        >  1:257211/1‑140 (MQ=255)

                                                                tCTGTTTCACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACcttct                                                                       >  1:2181759/1‑140 (MQ=255)

                                                                tCTGTTTCACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACcttct                                                                       >  2:1374138/1‑140 (MQ=255)

                                                                    tttCACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCg                                                                   >  1:1184736/1‑140 (MQ=255)

                                                                    tttCACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCg                                                                   >  1:1759661/1‑140 (MQ=255)

                                                                       taCTTGAGCGATAACGTCATCAACGCTGCGATCGTTCACCTGGCAAGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACAAATACCAAACTGCACGGAATGATTCGGATCGATCATTCCTTCTTTCGgcg                                                                <  2:952594/139‑1 (MQ=255)

                                                                       cACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTCCGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGgcg                                                                <  2:2181759/140‑1 (MQ=255)

                                                                       cACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGATTACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGgcg                                                                <  2:2385105/140‑1 (MQ=255)

                                                                       cACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGgcg                                                                <  2:980754/140‑1 (MQ=255)

                                                                       cACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGgcg                                                                <  2:2448538/140‑1 (MQ=255)

                                                                       cACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGgcg                                                                <  2:299379/140‑1 (MQ=255)

                                                                       cACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGgcg                                                                <  2:1877087/140‑1 (MQ=255)

                                                                       cACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGgcg                                                                <  2:564879/140‑1 (MQ=255)

                                                                       cACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGgcg                                                                <  1:1157378/140‑1 (MQ=255)

                                                                       cACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGgcg                                                                <  2:953905/140‑1 (MQ=255)

                                                                       cACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGgcg                                                                <  1:1789361/140‑1 (MQ=255)

                                                                       cACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGgcg                                                                <  2:1054025/140‑1 (MQ=255)

                                                                       cACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGgcg                                                                <  1:325747/140‑1 (MQ=255)

                                                                       cACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGgcg                                                                <  1:791421/140‑1 (MQ=255)

                                                                         cTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGGcgcg                                                              <  2:876219/140‑1 (MQ=255)

                                                                         cTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGGcgcg                                                              <  1:1374138/140‑1 (MQ=255)

                                                                         cTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGGcgcg                                                              <  2:1299383/140‑1 (MQ=255)

                                                                         cTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGGcgcg                                                              <  1:1642649/140‑1 (MQ=255)

                                                                         cTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGGcgcg                                                              <  1:745662/140‑1 (MQ=255)

                                                                         attGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGGcgcg                                                              <  2:761784/139‑1 (MQ=255)

                                                                          ttGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGGCGCgg                                                             >  2:162575/1‑140 (MQ=255)

                                                                            gggCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGgcg                                                                <  1:339612/135‑1 (MQ=255)

                                                                            gggCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGgcg                                                                <  2:538012/135‑1 (MQ=255)

                                                                            gggCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGgcg                                                                >  2:339612/1‑135 (MQ=255)

                                                                            gggCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGgcg                                                                >  1:538012/1‑135 (MQ=255)

                                                                            gggCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGGCGCGGta                                                           <  2:1804785/140‑1 (MQ=255)

                                                                            gggCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGGCGCGGta                                                           <  2:463281/140‑1 (MQ=255)

                                                                              gCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCCGTTGTCTTTATCAAACTCGGTACGAATGCCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGGCGCGGtata                                                         <  1:1682440/140‑1 (MQ=255)

                                                                              gCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGGCGCGGtata                                                         >  1:216589/1‑140 (MQ=255)

                                                                              gCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGGCGCGGtata                                                         >  1:2284518/1‑140 (MQ=255)

                                                                              gCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGGCGCGGtata                                                         >  2:2437348/1‑140 (MQ=255)

                                                                                       tCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGGCGCGGTATAGAACATAGt                                                >  2:1373217/1‑140 (MQ=255)

                                                                                        cATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGgcg                                                                >  1:720113/1‑123 (MQ=255)

                                                                                        cATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGGCGCGGTATAGAACATAGTg                                               <  2:1400911/140‑1 (MQ=255)

                                                                                              cGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGGCGCGGTATAGAACATAGTGCCGTgg                                         >  1:1626835/1‑140 (MQ=255)

                                                                                               gCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGGCGCGGTATAGAACATAGTGCCGTGGt                                        >  2:205622/1‑140 (MQ=255)

                                                                                                cTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGGCGCGGTATAGAACATAGTGCCGTGGTc                                       <  2:216589/140‑1 (MQ=255)

                                                                                                cTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGGCGCGGTATAGAACATAGTGCCGTGGTc                                       <  2:1583338/140‑1 (MQ=255)

                                                                                                cTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGGCGCGGTATAGAACATAGTGCCGTGGTc                                       >  1:1812103/1‑140 (MQ=255)

                                                                                                cTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGGCGCGGTATAGAACATAGTGCCGTGGTc                                       <  1:1373217/140‑1 (MQ=255)

                                                                                                 tGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGGCGCGGTATAGAACATAGTGCCGTGGTCa                                      >  1:1653536/1‑140 (MQ=255)

                                                                                                     aTCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGGCGCGGTATAGAACATAGTGCCGTGGTCAAAtt                                  >  1:2086132/1‑140 (MQ=255)

                                                                                                         ttCACCTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGGCGCGGTATAG‑ACATAGTGCCGTGGTCAAATTCACaa                             >  2:1425058/1‑140 (MQ=255)

                                                                                                             ccTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGGCGCGGTATAGAACATAGTGCCGTGGTCAAATTCACAAcc                           <  1:2029118/139‑1 (MQ=255)

                                                                                                             ccTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGGCGCGGTATAGAACATAGTGCCGTGGTCAAATTCACAAcc                           >  2:2029118/1‑139 (MQ=255)

                                                                                                             ccTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGGCGCGGTATAGAACATAGTGCCGTGGTCAAATTCACAACCg                          <  2:1642404/140‑1 (MQ=255)

                                                                                                             ccTGGCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGGCGCGGTATAGAACATAGTGCCGTGGTCAAATTCACAACCg                          >  2:1572575/1‑140 (MQ=255)

                                                                                                                 gCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGGCGCGGTATAGAACATAGTGCCGTGGTCAAATTCACAACCGTTCg                      >  1:154741/1‑140 (MQ=255)

                                                                                                                 gCAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGGCGCGGTATAGAACATAGTGCCGTGGTCAAATTCACAACCGTTCg                      >  1:608757/1‑140 (MQ=255)

                                                                                                                  cAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGGCGCGGTATAGAACATAGTGCCGTGGTCAAATTCACAACCGTTCGc                     <  2:1002058/140‑1 (MQ=255)

                                                                                                                  cAGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGGCGCGGTATAGAACATAGTGCCGTGGTCAAATTCACAACCGTTCGc                     <  1:1840415/140‑1 (MQ=255)

                                                                                                                  aaGGCGTCCAGCACGGTAAAGCAGATGTCATTATCAAACACAGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGGCGCGGTATAGAACATAGTGCCGTGATCAAATTCACAACCGTTCGc                     <  2:257211/139‑1 (MQ=255)

                                                                                                                   aGGCGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGGCGCGGTATAGAACATAGTGCCGTGGTCAAATTCACAACCGTTCGCa                    <  1:1558994/140‑1 (MQ=255)

                                                                                                                      cGTCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGGCGCGGTATAGAACATAGTGCCGTGGTCAAATTCACAACCGTTCGCATAg                 >  2:239933/1‑140 (MQ=255)

                                                                                                                        tCCAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGGCGCGGTATAGAACATAGTGCCGTGGTCAAATTCACAACCGTTCGCATAGGt               <  1:1902828/140‑1 (MQ=255)

                                                                                                                          cAGCACGGTAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGGCGCGGTATAGAACATAGTGCCGTGGTCAAATTCACAACCGTTCGCATAGGTAt             <  1:205622/140‑1 (MQ=255)

                                                                                                                                  tAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGGCGCGGTATAGAACATAGTGCCGTGGTCAAATTCACAACCGTTCGCATAGGTATCGGTGTgg     >  1:2139258/1‑140 (MQ=255)

                                                                                                                                  tAAAGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGGCGCGGTATAGAACATAGTGCCGTGGTCAAATTCACAACCGTTCGCATAGGTATCGGTGTgg     >  1:2177938/1‑140 (MQ=255)

                                                                                                                                     aGCAGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGGCGCGGTATAGAACATAGTGCCGTGGTCAAATTCACAACCGTTCGCATAGGTATCGGTGTGGGCg  <  1:880469/140‑1 (MQ=255)

GGTGCAAAAGCAGGATCCAGGCAGTCGATATCAAAAGTCAGGTAAACCGGCATATCACCCACAATCTGTTTCACTTGGGCGATAACGTCATCCACGCTGCGATCGTTCACCTGGCAGGCGTCCAGCACGGTAAAGCCGTTGTCTTTATCAAACTCGGTACGAATACCAATCTGCACGGAATGATTCGGGTCGATCAGACCTTCTTTCGGCGCGGTATAGAACATAGTGCCGTGGTCAAATTCACAACCGTTCGCATAGGTATCGGTGTGGGCG  >  NC_000913/3083079‑3083351

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A