Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A13 F48 I1 R1 62 147.6 5031800 99.1% 4986513 139.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,160,189 G→T P320T (CCA→ACA)  ygiQ ← radical SAM superfamily protein YgiQ

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,160,1890GT100.0% 377.6 / NA 108P320T (CCA→ACA) ygiQradical SAM superfamily protein YgiQ
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (54/54);  total (54/54)

Only 100 of 112 total aligned reads displayed.

CGGATGTGGCACGCGCTTGTATGGCAGCGCAAAAACGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGGCAGCAACACGTAGGTTTTTTCCCACGGTTTCGGGCGCGGTGGCTGCA  >  NC_000913/3160058‑3160311
                                                                                                                                   |                                                                                                                          
cGGATGTGGCACGCGCTTGTATGGCAGCGCAAAAACGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGttt                                                                                                                    >  2:1046170/1‑140 (MQ=255)
  gATGTGGCACGCGCTTGTATGGCAGCGCAAAAACGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCg                                                                                                                  <  2:1892519/140‑1 (MQ=255)
  gATGTGGCACGCGCTTGTATGGCAGCGCAAAAACGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCg                                                                                                                  <  1:1068570/140‑1 (MQ=255)
  gATGTGGCACGCGCTTGTATGGCAGCGCAAAAACGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCg                                                                                                                  >  1:1076087/1‑140 (MQ=255)
  gATGTGGCACGCGCTTGTATGGCAGCGCAAAAACGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCg                                                                                                                  <  1:2397170/140‑1 (MQ=255)
  gATGTGGCACGCGCTTGTATGGCAGCGCAAAAACGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCg                                                                                                                  <  2:621447/140‑1 (MQ=255)
  gATGTGGCACGCGCTTGTATGGCAGCGCAAAAACGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCg                                                                                                                  >  2:24231/1‑140 (MQ=255)
  gATGTGGCACGCGCTTGTATGGCAGCGCAAAAACGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCg                                                                                                                  <  1:2216765/140‑1 (MQ=255)
  gATGTGGCACGCGCTTGTATGGCAGCGCAAAAACGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCg                                                                                                                  <  1:210572/140‑1 (MQ=255)
   aTGTGGCACGCGCTTGTATGGCAGCGCAAAAACGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCgt                                                                                                                 >  1:1144407/1‑140 (MQ=255)
    tgtgGCACGCGCTTGTATGGCAGCGCAAAAACGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCgtg                                                                                                                >  1:1967848/1‑140 (MQ=255)
    tgtgGCACGCGCTTGTATGGCAGCGCAAAAACGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCgtg                                                                                                                <  2:2480886/140‑1 (MQ=255)
      tgGCACGCGCTTGTATGGCAGCGCAAAAACGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCgtggt                                                                                                              <  1:1581747/140‑1 (MQ=255)
       ggCACGCGCTTGTATGGCAGCGCAAAAACGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCgtggtg                                                                                                             <  2:1886742/140‑1 (MQ=255)
        gCACGCGCTTGTATGGCAGCGCAAAAACGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGTGCGGGCACAGCCTGTGTTGGTTTCGTGGTGc                                                                                                            >  1:1680497/1‑140 (MQ=255)
        gCACGCGCTTGTATGGCAGCGCAAAAACGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCg                                                                                                                  >  2:115538/1‑134 (MQ=255)
        gCACGCGCTTGTATGGCAGCGCAAAAACGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCg                                                                                                                  <  1:115538/134‑1 (MQ=255)
         cACGCGCTTGTATGGCAGCGCAAAAACGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCa                                                                                                           >  2:505440/1‑140 (MQ=255)
         cACGCGCTTGTATGGCAGCGCAAAAACGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCa                                                                                                           >  1:1859009/1‑140 (MQ=255)
             cgcTTGTATGGCAGCGCAAAAACGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAAt                                                                                                       >  1:1488949/1‑140 (MQ=255)
                     tGGCAGCGCAAAAACGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAg                                                                                               <  1:707161/140‑1 (MQ=255)
                       gCAGCGCAAAAACGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCa                                                                                             <  2:1592393/140‑1 (MQ=255)
                       gCAGCGCAAAAACGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCa                                                                                             <  1:2427823/140‑1 (MQ=255)
                       gCAGCGCAAAAACGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCa                                                                                             <  1:505440/140‑1 (MQ=255)
                       gCAGCGCAAAAACGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCa                                                                                             <  2:991763/140‑1 (MQ=255)
                       gCAGCGCAAAAACGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCa                                                                                             <  1:1241973/140‑1 (MQ=255)
                        cAGCGCAAAAACGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCAt                                                                                            <  1:578651/140‑1 (MQ=255)
                        cAGCGCAAAAACGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCAt                                                                                            >  2:2402184/1‑140 (MQ=255)
                        aaGCGCAAAAACGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCAt                                                                                            <  2:1141635/139‑1 (MQ=255)
                          gcgcAAAAACGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATgg                                                                                          <  1:177097/140‑1 (MQ=255)
                          gcgcAAAAACGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATgg                                                                                          <  1:254790/140‑1 (MQ=255)
                          gcgcAAAAACGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATgg                                                                                          <  2:706315/140‑1 (MQ=255)
                          gcgcAAAAACGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATgg                                                                                          >  2:337075/1‑140 (MQ=255)
                          gcgcAAAAACGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATgg                                                                                          <  1:1953455/140‑1 (MQ=255)
                           cgcAAAAACGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATggg                                                                                         >  2:264946/1‑140 (MQ=255)
                           cgcAAAAACGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATggg                                                                                         >  1:64801/1‑140 (MQ=255)
                             cAAAAACGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCg                                                                                       <  1:1299509/140‑1 (MQ=255)
                             cAAAAACGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCg                                                                                       >  2:370131/1‑140 (MQ=255)
                             cAAAAACGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCg                                                                                       >  1:25850/1‑140 (MQ=255)
                               aaaaCGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTa                                                                                     <  1:215028/140‑1 (MQ=255)
                               aaaaCGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTa                                                                                     <  2:108726/140‑1 (MQ=255)
                               aaaaCGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTa                                                                                     <  1:993503/140‑1 (MQ=255)
                                    gCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCa                                                                                <  1:337075/140‑1 (MQ=255)
                                        tCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACttt                                                                            >  1:1035829/1‑140 (MQ=255)
                                         ccATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTa                                                                           <  1:1046170/140‑1 (MQ=255)
                                         ccATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTa                                                                           <  2:1871681/140‑1 (MQ=255)
                                          cATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTAt                                                                          <  2:1859009/140‑1 (MQ=255)
                                          aaTCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTAt                                                                          <  2:1081747/139‑1 (MQ=255)
                                            tctcTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCg                                                                        <  2:1429644/140‑1 (MQ=255)
                                             ctctTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGc                                                                       <  1:1811800/140‑1 (MQ=255)
                                                  cGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTc                                                                  >  2:2165428/1‑140 (MQ=255)
                                                     aaGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACt                                                               <  1:24231/139‑1 (MQ=255)
                                                       gAAAGCGGAATAGCAGGCGGGTTGATCCACCCATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACttt                                                             <  1:2029309/140‑1 (MQ=255)
                                                        aaaGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACtttt                                                            >  2:2145593/1‑139 (MQ=255)
                                                        aaaGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACtttt                                                            >  1:1328323/1‑139 (MQ=255)
                                                         aaGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTtct                                                           <  1:1136695/140‑1 (MQ=255)
                                                         aaGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTtct                                                           >  2:2162674/1‑140 (MQ=255)
                                                         aaGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTtct                                                           <  2:1488949/140‑1 (MQ=255)
                                                              gAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGaaa                                                      <  1:561381/140‑1 (MQ=255)
                                                                 aaGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAaagaa                                                   <  2:1169834/139‑1 (MQ=255)
                                                                      ggCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGgcag                                              >  2:35721/1‑140 (MQ=255)
                                                                       gCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTCCAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGgcagc                                             <  1:1079503/140‑1 (MQ=255)
                                                                       gCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGgcagc                                             <  1:2162674/140‑1 (MQ=255)
                                                                         gggTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGGCAGCaa                                           >  1:2141788/1‑140 (MQ=255)
                                                                              gATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGGCAGCAACACGt                                      <  2:1316738/140‑1 (MQ=255)
                                                                              gATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGGGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATTGCCCTTCACTTTCTCGAAAGAAGGCAGCAACACGt                                      >  2:773262/1‑140 (MQ=255)
                                                                              gATCCACACATAGCGGTCGCCGTGTTTGTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGGCAGCAACACGt                                      <  2:299782/140‑1 (MQ=255)
                                                                                         aGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGGCAGCAGCACGTAGGTTTTTTcc                           >  2:1996143/1‑140 (MQ=255)
                                                                                         aGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGGCAGCAACACGTAGGTTTTTTcc                           >  1:1439354/1‑140 (MQ=255)
                                                                                         aGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGGCAGCAACACGTAGGTTTTTTcc                           >  1:1659436/1‑140 (MQ=255)
                                                                                         aGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGGCAGCAACACGTAGGTTTTTTcc                           >  2:514342/1‑140 (MQ=255)
                                                                                         aGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGGCAGCAACACGTAGGTTTTTTcc                           >  2:1985209/1‑140 (MQ=255)
                                                                                         aGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGGCAGCAACACGTAGGTTTTTTcc                           >  2:845177/1‑140 (MQ=255)
                                                                                         aGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGGCAGCAACACGTAGGTTTTTTcc                           >  1:1730749/1‑140 (MQ=255)
                                                                                         aGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGGCAGCAACACGTAGGTTTTTTcc                           >  1:1922257/1‑140 (MQ=255)
                                                                                         aGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGGCAGCAACACGTAGGTTTTTTcc                           >  1:2195771/1‑140 (MQ=255)
                                                                                         aGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGGCAGCAACACGTAGGTTTTTTcc                           >  1:262794/1‑140 (MQ=255)
                                                                                         aGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGGCAGCAACACGTAGGTTTTTTcc                           >  1:772007/1‑140 (MQ=255)
                                                                                         aGCGGACGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGGCAGCAACACGTAGGTTTTTTcc                           >  2:1635600/1‑140 (MQ=255)
                                                                                          gCGGTCGCCGTGTTTTTGCATCAATGTGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGGCAGCAACACGTAGGTTTTTTccc                          <  2:1680497/140‑1 (MQ=255)
                                                                                           cGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGGCAGCAACACGTAGGTTTTTTcccc                         >  2:843791/1‑139 (MQ=255)
                                                                                           cGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGGCAGCAACACGTAGGTTTTTTCCCa                         >  1:2029882/1‑140 (MQ=255)
                                                                                           cGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGGCAGCAACACGTAGGTTTTTTCCCa                         <  2:1413924/140‑1 (MQ=255)
                                                                                           cGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGGCAGCAACACGTAGGTTTTTTCCCa                         <  2:64801/140‑1 (MQ=255)
                                                                                             gTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGGCAGCAACACGTAGGTTTTTTCCCACg                       >  2:1972822/1‑140 (MQ=255)
                                                                                              tCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACTCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGGCAGCAACACGTAGGTTTTTTCCCACgt                      >  2:1150042/1‑139 (MQ=255)
                                                                                              tCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGGCAGCAACACGTAGGTTTTTTCCCACgg                      >  2:1688819/1‑140 (MQ=255)
                                                                                              tCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGGCAGCAACACGTAGGTTTTTTCCCACgg                      >  1:1309119/1‑140 (MQ=255)
                                                                                              tCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGAGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGGCAGCAACACGTAGGTTTTTTCCCACgg                      >  2:2323993/1‑140 (MQ=255)
                                                                                               cGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGGCAGCAACACGTAGGTTTTTTCCCACGGt                     >  1:112925/1‑140 (MQ=255)
                                                                                               cGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTACAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGGCAGCAACACGTAGGTTTTTTCCCACGGt                     >  1:13534/1‑140 (MQ=255)
                                                                                                gCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGTGTTGGCTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGACAGAAGGCAGCAACACGTAGGTATTTTCCCACGGtt                    >  2:1491913/1‑140 (MQ=255)
                                                                                                           gCATCAATGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGGCAGCAACACGTAGGTTTTTTCCCACGGTTTCGGGCGCGGt         <  1:3472/140‑1 (MQ=255)
                                                                                                                aaTGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGGCAGCAACACGTAGGTTTTTTCCCACGGTTTCGGGCGCGGTGGCTg    >  2:1913852/1‑140 (MQ=255)
                                                                                                                aaTGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGGCAGCAACACGTAGGTTTTTTCCCACGGTTTCGGGCGCGGTGGCTg    >  1:1480097/1‑140 (MQ=255)
                                                                                                                aaTGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGGCAGCAACACGTAGGTTTTTTCCCACGGTTTCGGGCGCGGTGGCTg    <  2:772007/140‑1 (MQ=255)
                                                                                                                 aTGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGTGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGGCAGCAACACGTAGGTTTTTTCCCACGGTTTCGGGCGCGGTGGCTGc   >  1:1707394/1‑140 (MQ=255)
                                                                                                                 aTGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGGCAGCAACACGTAGGTTTTTTCCCACGGTTTCGGGCGCGGTGGCTGc   <  2:1518667/140‑1 (MQ=255)
                                                                                                                  tGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGGCAGCAACACGTAGGTTTTTTCCCACGGTTTCGGGCGCGGTGGCTGCa  <  2:1659436/140‑1 (MQ=255)
                                                                                                                  tGCGCGGGCACAGCCTGTGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGGCAGCAACACGTAGGTTTTTTCCCACGGTTTCGGGCGCGGTGGCTGCa  <  1:370131/140‑1 (MQ=255)
                                                                                                                                   |                                                                                                                          
CGGATGTGGCACGCGCTTGTATGGCAGCGCAAAAACGCTGTCCATCTCTTCGGTAGAAAGCGGAATAGCAGGCGGGTTGATCCACACATAGCGGTCGCCGTGTTTTTGCATCAATGCGCGGGCACAGCCTGGGTTGGTTTCGTGGTGCAGAATACGCGAAGCATGGGCGTACAGCACTTTATCGCCCTTCACTTTCTCGAAAGAAGGCAGCAACACGTAGGTTTTTTCCCACGGTTTCGGGCGCGGTGGCTGCA  >  NC_000913/3160058‑3160311

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A