Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F48 I1 R1	56	123.4	4244010	99.1%	4205813	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,161,110	G→T	L13M (CTG→ATG)	ygiQ ←	radical SAM superfamily protein YgiQ

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,161,110	0	G	T	100.0%	301.9 / NA	86	L13M (CTG→ATG)	ygiQ	radical SAM superfamily protein YgiQ
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (42/44); total (42/44)

GATCGACATACGCGTCGCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTGCCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATTATAAGCCGGAACGAAAGAGAAATCGAAAGGTATTCCATACTCGCCCTCCTCGGGCG  >  NC_000913/3160975‑3161246

gATCGACATACGCGTCGCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTGCCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTcg                                                                                                                                      >  2:1128284/1‑140 (MQ=255)

  acGACATACGCGTCGCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTGCCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTcgcg                                                                                                                                    <  2:737121/139‑1 (MQ=255)

   cGATATACGCGTCGCCAGTAACCAAAACGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTGCCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGa                                                                                                                                   <  1:1319541/140‑1 (MQ=255)

    gACATACGCGTCGCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTGCCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGAt                                                                                                                                  <  1:605600/140‑1 (MQ=255)

    gACATACGCGTCGCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTGCCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGAt                                                                                                                                  <  1:2017739/140‑1 (MQ=255)

    gACATACGCGTCGCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTGCCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGAt                                                                                                                                  <  1:1677998/140‑1 (MQ=255)

            cgTCGCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTGCCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTgg                                                                                                                          >  1:40741/1‑140 (MQ=255)

               cGCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTGCCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATc                                                                                                                       >  1:1099260/1‑140 (MQ=255)

                gCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTGCCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCa                                                                                                                      >  2:2055249/1‑140 (MQ=255)

                gCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTGCCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCa                                                                                                                      >  2:2031495/1‑140 (MQ=255)

                gCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTGCCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCa                                                                                                                      >  2:1779388/1‑140 (MQ=255)

                gCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTGCCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCa                                                                                                                      >  1:1579632/1‑140 (MQ=255)

                gCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTGCCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCa                                                                                                                      >  1:1281038/1‑140 (MQ=255)

                 ccAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTGCCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAg                                                                                                                     <  2:337301/140‑1 (MQ=255)

                   aGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTGCCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAggg                                                                                                                   <  2:592257/140‑1 (MQ=255)

                   aGTAACCAAAATGACGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTGCCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAggg                                                                                                                   <  2:993551/140‑1 (MQ=255)

                     tAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTGCCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGgag                                                                                                                 >  1:1720761/1‑140 (MQ=255)

                                atgTCGCAGCTATCCCTGCCAAGATGATCCATCTCTTCACGAGACATCGGCAAAAACGGTGCCGGT‑CAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCAtt                                                                                                     >  2:1339974/1‑140 (MQ=255)

                                 tgTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTGCCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCAtt                                                                                                     >  1:2095379/1‑140 (MQ=255)

                                   tCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTGCCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCAtttt                                                                                                   >  2:593094/1‑140 (MQ=255)

                                   tCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTGCCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCAtttt                                                                                                   <  2:1099260/140‑1 (MQ=255)

                                    cGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTGCCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTg                                                                                                  <  2:1579632/140‑1 (MQ=255)

                                           aTCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTGCCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAg                                                                                           >  1:1654127/1‑140 (MQ=255)

                                             cccAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTGCCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGaa                                                                                         >  1:1280041/1‑140 (MQ=255)

                                                 gCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTGCCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGa                                                                                     >  1:598004/1‑140 (MQ=255)

                                                     aGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTGCCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATaaa                                                                                 >  1:1653492/1‑140 (MQ=255)

                                                      gTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTGCCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATaaaa                                                                                >  2:458923/1‑140 (MQ=255)

                                                      gTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTGCCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATaaaa                                                                                <  1:900887/140‑1 (MQ=255)

                                                          aTCCATCTCTTCACGAGACATCGGCAAAAACGGTGCCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAaat                                                                            >  2:1363697/1‑140 (MQ=255)

                                                          aTCCATCTCTTCACGAGACATCGGCAAAAACGGTGCCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAaat                                                                            >  2:2018098/1‑140 (MQ=255)

                                                                ctctTCACGAGACATCGGCAAAAACGGTGCCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCaa                                                                      >  1:644761/1‑140 (MQ=255)

                                                                 tctTCACGAGACATCGGCAAAAACGGTGCCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCaaa                                                                     >  2:420394/1‑140 (MQ=255)

                                                                 tctTCACGAGACATCGGCAAAAACGGTGCCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCaaa                                                                     >  1:634837/1‑140 (MQ=255)

                                                                    tCACGAGACATCGGCAAAAACGGTGCCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGc                                                                  <  2:1437360/140‑1 (MQ=255)

                                                                    tCACGAGACATCGGCAAAAACGGTGCCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGc                                                                  >  1:422015/1‑140 (MQ=255)

                                                                     cACGAGACATCGGCAAAAACGGTGCCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGcc                                                                 <  2:2095379/140‑1 (MQ=255)

                                                                     cACGAGACATCGGCAAAAACGGTGCCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGcc                                                                 <  1:1682593/140‑1 (MQ=255)

                                                                     cACGAGACATCGGCAAAAACGGTGCCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGcc                                                                 <  2:999651/140‑1 (MQ=255)

                                                                     aaCGAGACATCGGCAAAAACGGTGCCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGcc                                                                 <  2:40741/139‑1 (MQ=255)

                                                                        gagaCATCGGCAAAAACGGTGCCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCggg                                                              <  2:552579/140‑1 (MQ=255)

                                                                        gagaCATCGGCAAAAACGGTGCCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCggg                                                              <  2:939622/140‑1 (MQ=255)

                                                                           aCATCGGCAAAAACGGTGCCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGAt                                                           >  1:1238612/1‑140 (MQ=255)

                                                                             aTCGGCAAAAACGGTGCCGGTCCAAAGCAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATta                                                         >  2:1488097/1‑140 (MQ=255)

                                                                             aTCGGCAAAAACGGTGCCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATta                                                         >  1:574643/1‑140 (MQ=255)

                                                                               cGGCAAAAACGGTGCCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATtata                                                       >  2:275929/1‑140 (MQ=255)

                                                                               cGGCAAAAACGGTGCCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATtata                                                       >  2:1193931/1‑140 (MQ=255)

                                                                                    aaaaCGGTGCCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATTATAAGCCg                                                  <  1:1801838/140‑1 (MQ=255)

                                                                                           tGCCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCCTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATTATAAGCCGGAACGaa                                           >  2:535442/1‑140 (MQ=255)

                                                                                            gCCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATTATAAGCCGGAACGaaa                                          >  1:1539581/1‑140 (MQ=255)

                                                                                                 tCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATTATAAGCCGGAACGAAAGAGaa                                     >  2:1185240/1‑140 (MQ=255)

                                                                                                    aaaaCAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATTATAAGCCGGAACGAAAGAGAAATc                                  <  1:795723/140‑1 (MQ=255)

                                                                                                     aaaCAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATTATAAGCCGGAACGAAAGAGAAATCg                                 <  1:458923/140‑1 (MQ=255)

                                                                                                     aaaCAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATTATAAGCCGGAACGAAAGAGAAATCg                                 <  2:1720761/140‑1 (MQ=255)

                                                                                                      aaCAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATTATAAGCCGGAACGAAAGAGAAATCGa                                <  2:574643/140‑1 (MQ=255)

                                                                                                       aCAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATTATAAGCCGGAACGAAAGAGAAATCGaa                               <  1:275929/140‑1 (MQ=255)

                                                                                                       aCAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATTATAAGCCGGAACGAAAGAGAAATCGaa                               <  2:1654127/140‑1 (MQ=255)

                                                                                                       aCAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATTATAAGCCGGAACGAAAGAGAAATCGaa                               <  2:312343/140‑1 (MQ=255)

                                                                                                       aCAGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATTATAAGCCGGAACGAAAGAGAAATCGaa                               <  2:213/140‑1 (MQ=255)

                                                                                                         aGGCGGCCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATTATAAGCCGGAACGAAAGAGAAATCGAAAg                             <  2:1296606/140‑1 (MQ=255)

                                                                                                          ggcggcCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATTATAAGCCGGAACGAAAGAGAAATCGAAAgg                            <  2:644761/140‑1 (MQ=255)

                                                                                                          ggcggcCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCCTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATTATAAGCCGGAACGAAAGAGAAATCGAAAgg                            <  1:535442/140‑1 (MQ=255)

                                                                                                           gcggcCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATTATAAGCCGGAACGAAAGAGaaa                                    >  1:152175/1‑131 (MQ=255)

                                                                                                           gcggcCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATTATAAGCCGGAACGAAAGAGaaa                                    <  2:152175/131‑1 (MQ=255)

                                                                                                            cggcCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATTATAAGCCGGAACGAAAGAGAAATCGAAAGGTa                          <  2:1457644/140‑1 (MQ=255)

                                                                                                              gcCCAGTACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATTATAAGCCGGAACGAAAGAGAAATCGAAAGGTAtt                        <  1:1488097/140‑1 (MQ=255)

                                                                                                                    tACTGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATTATAAGCCGGAACGAAAGAGAAATCGAAAGGTATTCCATAc                  >  1:607163/1‑140 (MQ=255)

                                                                                                                       tGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATTATAAGCCGGAACGAAAGAGAAATCGAAAGGTATTCCATACTCg               <  2:1046759/140‑1 (MQ=255)

                                                                                                                       tGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATTATAAGCCGGAACGAAAGAGAAATCGAAAGGTATTCCATACTCg               <  1:1132399/140‑1 (MQ=255)

                                                                                                                       tGCGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATTATAAGCCGGAACGAAAGAGAAATCGAAAGGTATTCCATACTCg               <  2:422015/140‑1 (MQ=255)

                                                                                                                         ccgCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATTATAAGCCGGAACGAAAGAGAAATCGAAAGGTATTCCATACTCGcc             >  2:1463569/3‑140 (MQ=255)

                                                                                                                         cGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATTATAAGCCGGAACGAAAGAGAAATCGAAAGGTATTCCATACTCGcc             >  1:1241764/1‑140 (MQ=255)

                                                                                                                         cGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATTATAAGCCGGAACGAAAGAGAAATCGAAAGGTATTCCATACTCGcc             >  2:1391245/1‑140 (MQ=255)

                                                                                                                         cGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATTATAAGCCGGAACGAAAGAGAAATCGAAAGGTATTCCATACTCGcc             >  1:678342/1‑140 (MQ=255)

                                                                                                                         cGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATTATAAGCCGGAACGAAAGAGAAATCGAAAGGTATTCCATACTCGcc             >  2:776190/1‑140 (MQ=255)

                                                                                                                         cGGCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATTATAAGCCGGAACGAAAGAGAAATCGAAAGGTATTCCATACTCAcc             >  2:1766485/1‑140 (MQ=255)

                                                                                                                         aggCCAGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATTATAAGCCGGAACGAAAGAGAAATCGAAAGGTATTCCATACTCGcc             <  1:958397/139‑1 (MQ=255)

                                                                                                                              aGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATTATAAGCCGGAACGAAAGAGAAATCGAAAGGTATTCCATACTCGCcctcct        <  2:795125/140‑1 (MQ=255)

                                                                                                                              aGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATTATAAGCCGGAACGAAAGAGAAATCGAAAGGTATTCCATACTCGCcctcct        >  2:483797/1‑140 (MQ=255)

                                                                                                                              aGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATTATAAGCCGGAACGAAAGAGAAATCGAAAGGTATTCCATACTCGCcctcct        >  1:1207182/1‑140 (MQ=255)

                                                                                                                              aGGAGAACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATTATAAGCCGGAACGAAAGAGAAATCGAAAGGTATTCCATACTCGCcctcct        >  1:1483815/1‑140 (MQ=255)

                                                                                                                                  gaACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATTATAAGCCGGAACGAAAGAGAAATCGAAAGGTATTCCATACTCGCCCTCCTCggg    <  1:1128284/140‑1 (MQ=255)

                                                                                                                                  gaACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATTATAAGCCGGAACGAAAGAGAAATCGAAAGGTATTCCATACTCGCCCTCCTCggg    <  1:776190/140‑1 (MQ=255)

                                                                                                                                  gaACATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATTATAAGCCGGAACGAAAGAGAAATCGAAAGGTATTCCATACTCGCCCTCCTCggg    <  1:99953/140‑1 (MQ=255)

                                                                                                                                   aaCATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATTATAAGCCGGAACGAAAGAGAAATCGAAAGGTATTCCATACTCGCCCTCCTCGGGc   <  2:1467083/140‑1 (MQ=255)

                                                                                                                                   aaCATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATTATAAGCCGGAACGAAAGAGAAATCGAAAGGTATTCCATACTCGCCCTCCTCGGGc   <  1:420394/140‑1 (MQ=255)

                                                                                                                                   aaCATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATTATAAGCCGGAACGAAAGAGAAATCGAAAGGTATTCCATACTCGCCCTCCTCGGGc   <  2:1653492/140‑1 (MQ=255)

                                                                                                                                    aCATGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATTATAAGCCGGAACGAAAGAGAAATCGAAAGGTATTCCATACTCGCCCTCCTCGGGCg  <  2:1207182/140‑1 (MQ=255)

GATCGACATACGCGTCGCCAGTAACCAAAATGATGTCGCAGCTATCCCAGCCAAGTTGATCCATCTCTTCACGAGACATCGGCAAAAACGGTGCCGGTCCAAAACAGGCGGCCCAGTACTGCGGCCAGGAGAACAGGTCGCGATCCGGTTGGATCAGGGAGATAGAGCTCATTTTGCTTCCAGAAATGATAAAAAAATAATCAAAGGCCGGGGATTATAAGCCGGAACGAAAGAGAAATCGAAAGGTATTCCATACTCGCCCTCCTCGGGCG  >  NC_000913/3160975‑3161246

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A