Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A20 F48 I1 R1	52	61.9	2103308	98.8%	2078068	139.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,963,965	C→A	E71D (GAG→GAT)	ppdA ←	conserved protein PpdA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,963,965	0	C	A	100.0%	220.5 / NA	62	E71D (GAG→GAT)	ppdA	conserved protein PpdA
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (31/31); total (31/31)

GCAGGCCAAAGAAAGCAAGCGAAGGTGTCAGGTCGCTCATTTCGACTTCGGGCCAGCGTGGCACAAAGACCAATGGTGAACTGCCATGACAGGTATTGGCCCCAGCAGCGGAACTCACAAGGCACCATAACGTCCCCTCCCTGATAACGCTGATACTGTGGTCGCGGTTATGCCAGTTGGCATCTTCACGTAAATAGAGCAAATAGTCCCGCGCCTGGCTGGCGGTTTGCCATAGCCGTTGCGACTGCTGCCAGTATTGCCAGCCATAGAGTC  >  NC_000913/2963829‑2964101

gcAGGCCAAAGAAAGCAAGCGAAGGTGTCAGGTCGCTCATTTCGACTTCGGGCCAGCGTGGCACAAAGACCAATGGTGAACTGCCATGACAGGTATTGGCCCCAGCAGCGGAACTCACAAGGCACCATAACGTCccatcc                                                                                                                                       <  2:143280/140‑1 (MQ=255)

    gCCAAAGAAAGCAAGCGAAGGTGTCAGGTCGCTCATTTCGACTTCGGGCCAGCGTGGCACAAAGACCAATGGTGAACTGCCATGACAGGTATTGGCCCCAGCAGCGGAACTCACAAGGCACCATAACGTCCCATTCCTGa                                                                                                                                   >  2:645846/1‑140 (MQ=255)

    gCCAAAGAAAGCAAGCGAAGGTGTCAGGTCGCTCATTTCGACTTCGGGCCAGCGTGGCACAAAGACCAATGGTGAACTGCCATGACAGGTATTGGCCCCAGCAGCGGAACTCACAAGGCACCATAACGTCCCATCCCTGa                                                                                                                                   >  1:733398/1‑140 (MQ=255)

    gCCAAAGAAAGCAAGCGAAGGTGTCAGGTCGCTCATTTCGACTTCGGGCCAGCGTGGCACAAAGACCAATGGTGAACTGCCATGACAGGTATTGGCCCCAGCAGCGGAACTCACAAGGCACCATAACGTCCCATCCCTGa                                                                                                                                   >  1:836235/1‑140 (MQ=255)

    gCCAAAGAAAGCAAGCGAAGGTGTCAGGTCGCTCATTTCGACTTCGGGCCAGCGTGGCACAAAGACCAATGGTGAACTGCCATGACAGGTATTGGCCCCAGCAGCGGAACTCACAAGGCACCATAACGTCCCATCCCTGa                                                                                                                                   <  2:17534/140‑1 (MQ=255)

    gCCAAAGAAAGCAAGCGAAGGTGTCAGGTCGCTCATTTCGACTTCGGGCCAGCGTGGCACAAAGACCAATGGTGAACTGCCATGACAGGTATTGGCCCCAGCAGCGGAACTCACAAGGCACCATAACGTCCCATCCCTGa                                                                                                                                   >  2:339517/1‑140 (MQ=255)

     ccAAAGAAAGCAAGCGAAGGTGTCAGGTCGCTCATTTCGACTTCGGGCCAGCGTGGCACAAAGACCAATGGTGAACTGCCATGACAGGTATTGGCCCCAGCAGCGGAACTCACAAGGCACCATAACGTCCCATCCCTGAt                                                                                                                                  <  2:508294/140‑1 (MQ=255)

     ccAAAGAAAGCAAGCGAAGGTGTCAGGTCGCTCATTTCGACTTCGGGCCAGCGTGGCACAAAGACCAATGGTGAACTGCCATGACAGGTATTGGCCCCAGCAGCGGAACTCACAAGGCACCATAACGTCCCATCCCTGAt                                                                                                                                  <  1:364657/140‑1 (MQ=255)

     ccAAAGAAAGCAAGCGAAGGTGTCAGGTCGCTCATTTCGACTTCGGGCCAGCGTGGCACAAAGACCAATGGTGAACTGCCATGACAGGTATTGGCCCCAGCAGCGGAACTCACAAGGCACCATAACGTCCCATCCCTGAt                                                                                                                                  <  2:589159/140‑1 (MQ=255)

     ccAAAGAAAGCAAGCGAAGGTGTCAGGTCGCTCATTTCGACTTCGGGCCAGCGTGGCAAAAAGACCAATGGTGAACTGCCATGACAGGTATTGGCCCCAGCAGCGGAACTCACAAGGCACCATAACGTCCCATCCCTGAt                                                                                                                                  <  1:1022802/140‑1 (MQ=255)

      cAAAGAAAGCAAGCGAAGGTGTCAGGTCGCTCATTTCGACTTCGGGCCAGCGTGGCACAAAGACCAATGGTGAACTGCCATGACAGGTATTGGCCCCAGCAGCGGAACTCACAAGGCACCATAACGTCCCATCCCTGATa                                                                                                                                 >  1:278762/1‑140 (MQ=255)

       aaagaaagCAAGCGAAGGTGTCAGGTCGCTCATTTCGACTTCGGGCCAGCGTGGCACAAAGACCAATGGTGAACTGCCATGACAGGTATTGGCCCCAGCAGCGGAACTCACAAGGCACCATAACGTCCCATCCCTGATaa                                                                                                                                <  1:6736/140‑1 (MQ=255)

         agaaagCAAGCGAAGGTGTCAGGTCGCTCATTTCGACTTCGGGCCAGCGTGGCACAAAGACCAATGGTGAACTGCCATGACAGGTATTGGCCCCAGCAGCGGAACTCACAAGGCACCATAACGTCCCATCCCTGATAACg                                                                                                                              <  1:729264/140‑1 (MQ=255)

         agaaagCAAGCGAAGGTGTCAGGTCGCTCATTTCGACTTCGGGCCAGCGTGGCACAAAGACCAATGGTGAACTGCCATGACAGGTATTGGCCCCAGCAGCGGAACTCACAAGGCACCATAACGTCCCATCCCTGATAACg                                                                                                                              >  1:92349/1‑140 (MQ=255)

          gaaagCAAGCGAAGGTGTCAGGTCGCTCATTTCGACTTCGGGCCAGCGTGGCACAAAGACCAATGGTGAACTGCCATGACAGGTATTGGCCCCAGCAGCGGAACTCACAAGGCACCATAACGTCCCATCCCTGATAACGc                                                                                                                             <  2:733398/140‑1 (MQ=255)

              gcaagcGAAGGTGTCAGGTCGCTCATTTCGACTTCGGGCCAGCGTGGCACAAAGACCAATGGTGAACTGCCATGACAGGTATTGGCCCCAGCAGCGGAACTCACAAGGCACCATAACGTCCCATCCCTGATAACGCTGAt                                                                                                                         >  2:496730/1‑140 (MQ=255)

                  gcGAAGGTGTCAGGTCGCTCATTTCGACTTCGGGCCAGCGTGGCACAAAGACCAATGGTGAACTGCCATGACAGGTATTGGCCCCAGCAGCGGAACTCACAAGGCACCATAACGTCCCATCCCTGATAACGCTGATACtg                                                                                                                     >  1:219185/1‑140 (MQ=255)

                  gcGAAGGTGTCAGGTCGCTCATTTCGACTTCGGGCCAGCGTGGCACAAAGACCAATGGTGAACTGCCATGACAGGTATTGGCCCCAGCAGCGGAACTCACAAGGCACCATAACGTCCCATCCCTGATAACGCTGATACtg                                                                                                                     >  1:768172/1‑140 (MQ=255)

                   cGAAGGTGTCAGGTCGCTCATTTCGACTTCGGGCCAGCGTGGCACAAAGACCAATGGCGAACTGCCATGACAGGTATTGGCCCCAGCAGCGGAACTCACAAGGCACCATAACGTCCCATCCCTGATAACGCTGATACtgt                                                                                                                    >  1:989462/1‑140 (MQ=255)

                       ggTGTCAGGTCGCTCATTTCGACTTCGGGCCAGCGTGGCACAAAGACCAATGGTGAACTGCCATGACAGGTATTGGCCCCAGCAGCGGAACTCACAAGGCACCATAACGTCCCATCCCTGATAACGCTGATACTGTGGTc                                                                                                                <  2:912811/140‑1 (MQ=255)

                       ggTGTCAGGTCGCTCATTTCGACTTCGGGCCAGCGTGGCACAAAGACCAATGGTGAACTGCCATGACAGGTATTGGCCCCAGCAGCGGAACTCACAAGGCACCATAACGTCCCATCCCTGATAACGCTGATACTGTGGTc                                                                                                                <  2:92349/140‑1 (MQ=255)

                            cAGGTCGCTCATTTCGACTTCGGGCCAGCGTGGCACAAAGACCAATGGTGAACTGCCATGACAGGTATTGGCCCCAGCAGCGGAACTCACAAGGCACCATAACGTCCCATCCCTGATAACGCTGATACTGTGGTCGCGGt                                                                                                           <  2:422823/140‑1 (MQ=255)

                                  gCTCATTTCGACTTCGGGCCAGCGTGGCACAAAGACCAATGGTGAACTGCCATGACAGGTATTGGCCCCAGCAGCGGAACTCACAAGGCACCATAACGTCCCATCCCTGATAACGCTGATACTGTGGTCGCGGTTATGcc                                                                                                     >  2:279586/1‑140 (MQ=255)

                                         tCGACTTCGGGCCAGCGTGGCACAAAGACCAATGGTGAACTGCCATGACAGGTATTGGCCCCAGCAGCGGAACTCACAAGGCACCATAACGTCCCATCCCTGATAACGCTGATACTGTGGTCGCGGTTATGCCAGTTGGc                                                                                              <  1:607835/140‑1 (MQ=255)

                                            aCTTCGGGCCAGCGTGGCACAAAGACCAATGGTGAACTGCCATGACAGGTATTGGCCCCAGCAGCGGAACTCACAAGGCACCATAACGTCCCATCCCTGATAACGCTGATACTGTGGTCGCGGTTATGCCAGTTGGCATc                                                                                           <  1:496730/140‑1 (MQ=255)

                                                caagCCAGCGGCGCACAAACACCAATGGTGAACTGCCACGACAGGAATGGGCCCCAGCAGCGGAACTCACAAGGCACCATAACGTCCCATCCCTGATAACGCTGATACTGTGGTCGCGGTTAGGCCATATGGCATCTTCa                                                                                       >  2:667235/4‑140 (MQ=255)

                                                 gggCCAGCGTGGCACAAAGACCAATGGTGAACTGCCATGACAGGTATTGGCCCCAGCAGCGGAACTCACAAGGCACCATAACGTCCCATCCCTGATAACGCTGATACTGTGGTCGCGGTTATGCCAGTTGGCATCTTcgc                                                                                      <  1:305521/140‑3 (MQ=255)

                                                 gggCCAGCGTGGCACAAAGACCAATGGTGAACTGCCATGACAGGTATTGGCCCCAGCAGCGGAACTCACAAGGCACCATAACGTCCCATCCCTGATAACGCTGATACTGTGGTCGCGGTTATGCCAGTTGGCATCTTCAc                                                                                      <  1:320955/140‑1 (MQ=255)

                                                       gCGTGGCACAAAGACCAATGGTGAACTGCCATGACAGGTATTGGCCCCAGCAGCGGAACTCACAAGGCACCATAACGTCCCATCCCTGATAACGCTGATACTGTGGTCGCGGTTATGCCAGTTGGCATCTTCACGTAAAt                                                                                <  1:850846/140‑1 (MQ=255)

                                                        cGTGGCACAAAGACCAATGGTGAACTGCCATGACAGGTATTGGCCCCAGCAGCGGAACTCACAAGGCACCATAACGTCCCATCCCTGATAACGCTGATACTGTGGTCGCGGTTATGCCAGTTGGCATCTTCACGTAAATa                                                                               >  1:437725/1‑140 (MQ=255)

                                                            gCACAAAGACCAATGGTGAACTGCCATGACAGGTATTGGCCCCAGCAGCGGAACTCACAAGGCACCATAACGTCCCATCCCTGATAACGCTGATACTGTGGTCGCGGTTATGCCAGTTGGCATCTTCACGTAAACAGAGc                                                                           <  2:686621/140‑1 (MQ=255)

                                                             cacaAAGACCAATGGTGAACTGCCATGACAGGTATTGGCCCCAGCAGCGGAACTCACAAGGCACCATAACGTCCCATCCCTGATAACGCTGATACTGTGGTCGCGGTTATGCCAGTTGGCATCTTCACGTAAATAGAGCa                                                                          >  2:75654/1‑140 (MQ=255)

                                                                  aGACCAATGGTGAACTGCCATGACAGGTATTGGCCCCAGCAGCGGAACTCACAAGGCACCATAACGTCCCATCCCTGATAACGCTGATACTGTGGTCGCGGTTATGCCAGTTGGCATCTTCACGTAAATAGAGCAAATAg                                                                     >  1:237310/1‑140 (MQ=255)

                                                                              aaCTGCCATGACAGGTATTGGCCCCAGCAGCGGAACTCACAAGGCACCATAACGTCCCATCCCTGATAACGCTGATACTGTGGTCGCGGTTATGCCAGTTGGCATCTTCACGTAAATAGAGCAAATAGTCCCGCGCctgg                                                         >  2:367829/1‑140 (MQ=255)

                                                                                   ccATGACAGGTATTGGCCCCAGCAGCGGAACTCACAAGGCACCATAACGTCCCATCCCTGATAACGCTGATACTGTGGTCGCGGTTATGCCAGTTGGCATCTTCACGTAAATAGAGCAAATAGTCCCGCGCCtggctggc                                                    >  2:399366/1‑140 (MQ=255)

                                                                                     aTGACAGGTATTGGCCCCAGCAGCGGAACTCACAAGGCACCATAACGTCCCATCCCTGATAACGCTGATACTGTGGTCGCGGTTATGCCAGTTGGCATCTTCACGTAAATAGAGCAAATAGTCCCGCGCCTGGCTGGCgg                                                  >  2:464576/1‑140 (MQ=255)

                                                                                      tGACAGGTATTGGCCCCAGCAGCGGAACTCACAAGGCACCATAACGTCCCATCCCTGATAACGCTGATACTGTGGTCGCGGTTATGCCAGTTGGCATCTTCACGTAAATAGAGCAAATAGTCCCGCGCCTGGCTGGCGGt                                                 <  2:219185/140‑1 (MQ=255)

                                                                                      agACAGGTATTGGCCCCAGCAGCGGAACTCACAAGGCACCATAACGTCCCATCCCTGATAACGCTGATACTGTGGTCGCGGTTATGCCAGTTGGCATCTTCACGTAAATAGAGCAAATAGTCCCGCGCCTGGCTGGCGGt                                                 <  2:432688/139‑1 (MQ=255)

                                                                                             tATTGGTCCCAGCAGCGGAACTCACAAGGCACCATAACGTCCCATCCCTGATAACGCTGATACTGTGGTCGCGGTTATGCCAGTTGGCATCTTCACGTAAATAGAGCAAATAGTCCCGCGCCTGGCTGGCGGTTTGCCAt                                          >  1:1016345/1‑140 (MQ=255)

                                                                                             tATTGGCCCCAGCAGCGGAACTCACAAGGCACCATAACGTCCCATCCCTGATAACGCTGATACTGTGGTCGCGGTTATGCCAGTTGGCATCTTCACGTAAATAGAGCAAATAGTCCCGCGCCTGGCTGGCGGTTTGCCAt                                          >  1:769309/1‑140 (MQ=255)

                                                                                             tATTGGCCCCAGCAGCGGAACTCACAAGGCACCATAACGTCCCATCCCTGATAACGCTGATACTGTGGTCGCGGTTATGCCAGTTGGCATCTTCACGTAAATAGAGCAAATAGTCCCGCGCCTGGCTGGCGGTTTGCCAt                                          >  2:449338/1‑140 (MQ=255)

                                                                                             tATTGGCCCCAGCAGCGGAACTCACAAGGCACCATAACGTCCCATCCCTGATAACGCTGATACTGTGGTCGCGGTTATGCCAGTTGGCATCTTCACGTAAATAGAGCAAATAGTCCCGCGCCTGGCTGGCGGTTTGCCAt                                          >  2:4042/1‑140 (MQ=255)

                                                                                                  gCCCCAGCAGCGGAACTCACAAGGCACCATAACGTCCCATCCCTGATAACGCTGATACTGTGGTCGCGGTTATGCCAGTTGGCATCTTCACGTAAATAGAGCAAATAGTCCCGCGCCTGGCTGGCGGTTTGCCa                                           <  1:434895/134‑1 (MQ=255)

                                                                                                  gCCCCAGCAGCGGAACTCACAAGGCACCATAACGTCCCATCCCTGATAACGCTGATACTGTGGTCGCGGTTATGCCAGTTGGCATCTTCACGTAAATAGAGCAAATAGTCCCGCGCCTGGCTGGCGGTTTGCCa                                           >  2:434895/1‑134 (MQ=255)

                                                                                                  gCCCCAGCAGCGGAACTCACAAGGCACCATAACGTCCCATCCCTGATAACGCTGATACTGTGGTCGCGGTTATGCCAGTTGGCATCTTCACGTAAATAGAGCAAATAGTCCCGCGCCTGGCTGGCGGTTTGCCATAGCCg                                     >  1:306315/1‑140 (MQ=255)

                                                                                                     ccAGCAGCGGAACTCACAAGGCACCATAACGTCCCATCCCTGATAACGCTGATACTGTGGTCGCGGTTATGCCAGTTGGCATCTTCACGTAAATAGAGCAAATAGTCCCGCGCCTGGCTGGCGGTTTGCCATAGCCGTTg                                  >  2:122077/1‑140 (MQ=255)

                                                                                                      cagcagCGGAACTCACAAGGCACCATAACGTCCCATCCCTGATAACGCTGATACTGTGGTCGCGGTTATGCCAGTTGGCATCTTCACGTAAATAGAGCAAATAGTCCCGCGCCTGGCTGGCGGTTTGCCATAGCCGGTGc                                 >  1:654932/1‑140 (MQ=255)

                                                                                                       agcagcGGAACTCACAAGGCACCATAACGTCCCATCCCTGATAACGCTGATACTGTGGTCGCGGTTATGCCAGTTGGCATCTTCACGTAAATAGAGCAAATAGTCCCGCGCCTGGCTGGCGGTTTGCCATAGCCGTTGCg                                <  1:449338/140‑1 (MQ=255)

                                                                                                       agcagcGGAACTCACAAGGCACCATAACGTCCCATCCCTGATAACGCTGATACTGTGGTCGCGGTTATGCCAGTTGGCATCTTCACGTAAATAGAGCAAATAGTCCCGCGCCTGGCTGGCGGTTTGCCATAGCCGTTGCg                                >  2:109877/1‑140 (MQ=255)

                                                                                                       agcagcGGAACTCACAAGGCACCATAACGTCCCATCCCTGATAACGCTGATACTGTGGTCGCGGTTATGCCAGTTGGCATCTTCACGTAAATAGAGCAAATAGTCCCGCGCCTGGCTGGCGGTTTGCCATAGCCGTTGCg                                >  1:623299/1‑140 (MQ=255)

                                                                                                        gcagcGGAACTCACAAGGCACCATAACGTCCCATCCCTGATAACGCTGATACTGTGGTCGCGGTTATGCCAGTTGGCATCTTCACGTAAATAGAGCAAATAGTCCCGCGCCTGGCTGGCGGTTTGCCATAGCCGTTGCGa                               <  1:462584/140‑1 (MQ=255)

                                                                                                          agcGGAACTCACAAGGCACCATAACGTCCCATCCCTGATAACGCTGATACTGTGGTCGCGGTTATGCCAGTTGGCATCTTCACGTAAATAGAGCAAATAGTCCCGCGCCTGGCTGGCGGTTTGCCATAGCCGTTGCGAct                             <  1:449466/140‑1 (MQ=255)

                                                                                                            cGGAACTCACAAGGCACCATAACGTCCCATCCCTGATAACGCTGATACTGTGGTCGCGGTTATGCCAGTTGGCATCTTCACGTAAATAGAGCAAATAGTCCCGCGCCTGGCTGGCGGTTTGCCATAGCCGTTGCGActgc                           >  2:1047249/1‑140 (MQ=255)

                                                                                                              gAACTCACAAGGCACCATAACGTCCCATCCCTGATAACGCTGATACTGTGGTCGCGGTTATGCCAGTTGGCATCTTCACGTAAATAGAGCAAATAGTCCCGCGCCTGGCTGGCGGTTTGCCATAGCCGTTGCGActgctg                         <  1:75654/140‑1 (MQ=255)

                                                                                                                      aaGGCACCATAACGTCCCATCCCTGATAACGCTGATACTGTGGTCGCGGTTATGCCAGTTGGCATCTTCACGTAAATAGAGCAAATAGTCCCGCGCCTGGCTGGCGGTTTGCCATAGCCGTTGCGACTGCTGCCAGTAtt                 <  1:521394/140‑1 (MQ=255)

                                                                                                                        ggCACCATAACGTCCCATCCCTGATAACGCTGATACTGTGGTCGCGGTTATGCCAGTTGGCATCTTCACGTAAATAGAGCAAATAGTCCCGCGCCTGGCTGGCGGTTTGCCATAGCCGTTGCGACTGCTGCCAGTATTgc               <  2:237310/140‑1 (MQ=255)

                                                                                                                        ggCACCATAACGTCCCATCCCTGATAACGCTGATACTGTGGTCGCGGTTATGCCAGTTGGCATCTTCACGTAAATAGAGCAAATAGTCCCGCGCCTGGCTGGCGGTTTGCCATAGCCGTTGCGACTGCTGCCAGTATTgc               <  1:1047249/140‑1 (MQ=255)

                                                                                                                        ggCACCATAACGTCCCATCCCTGATAACGCTGATACTGTGGTCGCGGTTATGCCAGTTGGCATCTTCACGTAAATAGAGCAAATAGTCCCGCGCCTGGCTGGCGGTTTGCCATAGCCGTTGCGACTGCTGCCAGTATTgc               <  1:122077/140‑1 (MQ=255)

                                                                                                                        ggCACCATAACGTCCCATCCCTGATAACGCTGATACTGGGGTCGCGGTTATGCCAGTTGGCATCTTCACGTAAATAGAGCAAATAGTCCCGCGCCGGGCTGGCGGTTTGCCATAGCCGTTGCGACTGCTGCCAGTATTgc               <  1:305403/140‑1 (MQ=255)

                                                                                                                           aCCATAAGGTCCCATCCCTGATAACGCTGATACTGTGGTCGCGGTTATGCCAGTTGGGATCTTCACGTAAAAAGAGCAAATAGTCCAGCGACTGGCTGGCGGTTTGCCATATCCGTTGCGACTGCTGCCAGTATTgccag            >  2:991241/1‑140 (MQ=255)

                                                                                                                                aaCGTCCCATCCCTGATAACGCTGATACTGTGGTCGCGGTTATGCCAGTTGGCATCTTCACGTAAATAGAGCAAATAGTCCCGCGCCTGGCTGGCGGTTTGCCATAGCCGTTGCGACTGCTGCCAGTATTGCCAGCCATa       <  1:645846/140‑1 (MQ=255)

                                                                                                                                aaCGTCCCATCCCTGATAACGCTGATACTGTGGTCGCGGTTATGCCAGTTGGCATCTTCACGTAAATAGAGCAAATAGTCCCGCGCCTGGCTGGCGGTTTGCCATAGCCGTTGCGACTGCTGCCAGTATTGCCAGCCATa       <  2:768172/140‑1 (MQ=255)

                                                                                                                                aaCGTCCCATCCCTGATAACGCTGATACTGTGGTCGCGGTTATGCCAGTTGGCATCTTCACGTAAATAGAGCAAATAGTCCCGCGCCTGGCTGGCGGTTTGCCATAGCCGTTGCGACTGCTGCCAGTATTGCCAGCCATa       <  1:464576/140‑1 (MQ=255)

                                                                                                                                    tCCCATCCCTGATAACGCTGATACTGTGGTCGCGGTTATGCCAGTTGGCATCTTCACGTAAATAGAGCAAATAGTCCCGCGCCTGGCTGGCGGTTTGCCATAGCCGTTGCGACTGCTGCCAGTATTGCCAGCCATAGAGt   >  2:1048115/1‑140 (MQ=255)

                                                                                                                                    tCCCATCCCTGATAACGCTGATACTGTGGACGCGGTTATGCCAGTTGGCATCTTCACGTAAATAGAGCAAATAGTCCCGCGCCTGGCTGGCGGTTTGCCATAGCCGTTGCGACTGCTGCCAGTATTGCCAGCCATAGAGt   >  1:620191/1‑140 (MQ=255)

                                                                                                                                     cccaTCCCTGATAACGCTGATACTGTGGTCGCGGTTATGCCAGTTGGCATCTTCACGTAAATAGAGCAAATAGTCCCGCGCCTGGCTGGCGGTTTGCCATAGCCGTTGCGACTGCTGCCAGTATTGCCAGCCATAGAGTc  <  1:279586/140‑1 (MQ=255)

GCAGGCCAAAGAAAGCAAGCGAAGGTGTCAGGTCGCTCATTTCGACTTCGGGCCAGCGTGGCACAAAGACCAATGGTGAACTGCCATGACAGGTATTGGCCCCAGCAGCGGAACTCACAAGGCACCATAACGTCCCCTCCCTGATAACGCTGATACTGTGGTCGCGGTTATGCCAGTTGGCATCTTCACGTAAATAGAGCAAATAGTCCCGCGCCTGGCTGGCGGTTTGCCATAGCCGTTGCGACTGCTGCCAGTATTGCCAGCCATAGAGTC  >  NC_000913/2963829‑2964101

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A