Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A20 F48 I1 R1 52 61.9 2103308 98.8% 2078068 139.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,337,342 G→T T196T (ACC→ACA)  adiY ← DNA‑binding transcriptional activator AdiY

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,337,3420GT100.0% 279.8 / NA 79T196T (ACC→ACA) adiYDNA‑binding transcriptional activator AdiY
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (48/31);  total (48/31)

TGCAGCGGCGTCATACCGTAGAAGTCTTTAAAGACAGAAATAAAGTACGACGTACTGTTGTAGCCGCAGGACTGTGATACCTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCAGGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCTAAGACATAAACAACTGGCTACCATACTAAGATTCCAGTCTTTGTGAATATCGCTTTCAATAATTTGAT  >  NC_000913/4337205‑4337475
                                                                                                                                         |                                                                                                                                     
tGCAGCGGCGTCATACCGTAGAAGTCTTTAAAGACAGAAATAAAGTACGACGTACTGTTGTAGCCGCAGGACTGTGATACCTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCAtgt                                                                                                                                     >  2:597934/1‑140 (MQ=255)
tGCAGCGGCGTCATACCGTAGAAGTCTTTAAAGACAGAAATAAAGTACGACGTACTGTTGTAGCCGCAGGACTGTGATACCTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCAtgt                                                                                                                                     >  2:158440/1‑140 (MQ=255)
     cggcgTCATACCGTAGAAGTCTTTAAAGACAGAAATAAAGTACGACGTACTGTTGTAGCCGCAGGACTGTGATACCTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGa                                                                                                                                >  1:644163/1‑140 (MQ=255)
        cgTCATACCGTAGAAGTCTTTAAAGACAGAAATAAAGTACGACGTACTGTTGTAGCCGCAGGACTGTGATACCTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGatta                                                                                                                             >  2:481236/1‑140 (MQ=255)
         gTCATACCGTAGAAGTCTTTAAAGACAGAAATAAAGTACGACGTACTGTTGTAGCCGCAGGACTGTGATACCTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGattat                                                                                                                            <  2:792241/140‑1 (MQ=255)
              aCCGTAGAAGTCTTTAAAGACAGAAATAAAGTACGACGTACTGTTGTAGCCGCAGGACTGTGATACCTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGc                                                                                                                       <  1:794173/140‑1 (MQ=255)
              aCCGTAGAAGTCTTTAAAGACAGAAATAAAGTACGACGTACTGTTGTAGCCGCAGGACTGTGATACCTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGc                                                                                                                       <  1:250420/140‑1 (MQ=255)
                 gTAGAAGTCTTTAAAGACAGAAATAAAGTACGACGTACTGTTGTAGCCGCAGGACTGTGATACCTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGattatt                                                                                                                           >  2:634505/1‑133 (MQ=255)
                 gTAGAAGTCTTTAAAGACAGAAATAAAGTACGACGTACTGTTGTAGCCGCAGGACTGTGATACCTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGattatt                                                                                                                           <  1:634505/133‑1 (MQ=255)
                  tAGAAGTCTTTAAAGACAGAAATAAAGTACGACGTACTGTTGTAGCCGCAGGACTGTGATACCTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCtata                                                                                                                   >  1:376423/1‑140 (MQ=255)
                        tCTTTAAAGACAGAAATAAAGTACGACGTACTGTTGTAGCCGCAGGACTGTGATACCTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGgt                                                                                                             >  2:874682/1‑140 (MQ=255)
                          tttAAAGACAGAAATAAAGTACGACGTACTGTTGTAGCCGCAGGACTGTGATACCTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGgtgt                                                                                                           >  1:66258/1‑140 (MQ=255)
                             aaaGACAGAAATAAAGTACGACGTACTGTTGTAGCCGCAGGACTGTGATACCTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGtttt                                                                                                        <  1:743712/140‑1 (MQ=255)
                             aaaGACAGAAATAAAGTACGACGTACTGTTGTAGCCGCAGGACTGTGATACCTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGtttt                                                                                                        <  2:506298/140‑1 (MQ=255)
                             aaaGACAGAAATAAAGTACGACGTACTGTTGTAGCCGCAGGACTGTGATACCTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGtttt                                                                                                        >  1:594168/1‑140 (MQ=255)
                                           aGTACGACGTACTGTTGTAGCCGCAGGACTGTGATACCTGAGAGATATTTTTACCGTCCATCATTAATTCATTTATGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACttt                                                                                          >  1:214029/1‑140 (MQ=255)
                                           aGTACGACGTACTGTTGTAGCCGCAGGACTGTGATACCTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACttt                                                                                          >  1:61491/1‑140 (MQ=255)
                                           aGTACGACGTACTGTTGTAGCCGCAGGACTGTGATACCTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACttt                                                                                          >  2:138132/1‑140 (MQ=255)
                                           aGTACGACGTACTGTTGTAGCCGCAGGACTGTGATACCTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACttt                                                                                          <  2:609307/140‑1 (MQ=255)
                                              acgacgTACTGTTGTAGCCGCAGGACTGTGATACCTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTc                                                                                       <  2:376423/140‑1 (MQ=255)
                                               cgacgTACTGTTGTAGCCGCAGGACTGTGATACCTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCt                                                                                      >  2:704089/1‑140 (MQ=255)
                                                  cgTACTGTTGTAGCCGCAGGACTGTGATACCTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTa                                                                                   >  1:650389/1‑140 (MQ=255)
                                                   gTACTGTTGTAGCCGCAGGACTGTGATACCTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTaa                                                                                  >  2:827049/1‑140 (MQ=255)
                                                         ttgtAGCCGCAGGACTGTGATACCTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACt                                                                            <  2:726223/140‑1 (MQ=255)
                                                         ttgtAGCCGCAGGACTGTGATACCTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACt                                                                            <  1:138132/140‑1 (MQ=255)
                                                         ttgtAGCCGCAGGACTGTGATACCTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACATTTTCTTTAACAGACt                                                                            >  1:370269/1‑140 (MQ=255)
                                                         ttgtAGATGCAGGACTGTGATACCTGAGAGATATTTTTTCCGTCCATCATTAATTCATTTACTGCATAACGCACGCGGCATGTGGTGATTATTTGGCTATATCTGGTGTTTTCGCTCTTCTACTATTTCTTTACCAGGCt                                                                            <  2:594168/140‑1 (MQ=255)
                                                           gtAGCCGCAGGACTGTGATACCTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACttt                                                                          >  2:424229/1‑139 (MQ=255)
                                                            tAGCCGCAGGACTGTGATACCTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTgt                                                                         >  2:103450/1‑139 (MQ=255)
                                                              gCCGCAGGACTGTGATACCTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGc                                                                       >  1:506633/1‑140 (MQ=255)
                                                               ccGCAGGACTGTGATACCTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCt                                                                      <  2:272603/140‑1 (MQ=255)
                                                               ccGCAGGACTGTGATACCTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCt                                                                      >  1:31930/1‑140 (MQ=255)
                                                               ccGCAGGACTGTGATACCTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCt                                                                      <  2:811800/140‑1 (MQ=255)
                                                                cGCAGGACTGTGATACCTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCTa                                                                     <  2:370269/140‑1 (MQ=255)
                                                                  cAGGACTGTGATACCTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCTAAg                                                                   <  1:481236/140‑1 (MQ=255)
                                                                   aGGACTGTGATACCTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCTAAGa                                                                  >  1:503302/1‑140 (MQ=255)
                                                                   aGGACTGTGATACCTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCTAAGa                                                                  >  2:507809/1‑140 (MQ=255)
                                                                   aGGACTGTGATACCTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCTAAGa                                                                  >  2:334808/1‑140 (MQ=255)
                                                                   aGGACTGTGATACCTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCTAAGa                                                                  >  1:650073/1‑140 (MQ=255)
                                                                   aGGACTGTGATACCTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCTAAGa                                                                  >  1:472171/1‑140 (MQ=255)
                                                                   aGGACTGTGATACCTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCTAAGa                                                                  >  1:722654/1‑140 (MQ=255)
                                                                   aGGACTGTGATACCTGAGAGACATTTTCACCATCCATCATTAATTCATTTACGACATTATGCATGTGGCATTTACAGATAATTTGGGTATAACAGGAGTTGTCACTTTTCAACTTTTTCTTTAACAGACTTGAGCTAAgt                                                                  >  2:33538/1‑139 (MQ=255)
                                                                     gACTGTGATACCTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCTAAGACa                                                                >  1:817823/1‑140 (MQ=255)
                                                                       cTGTGATACCTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCTAAGACATa                                                              <  2:650073/140‑1 (MQ=255)
                                                                       cTGTGATACCTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCTAAGACATa                                                              <  2:61491/140‑1 (MQ=255)
                                                                         gtgATACCTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCTAAGACATaaa                                                            <  2:66258/140‑1 (MQ=255)
                                                                         gtgATACCTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCTAAGACATaaa                                                            <  1:703919/140‑1 (MQ=255)
                                                                            aTACCTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCTAAGACATAaacaa                                                         <  2:970020/140‑1 (MQ=255)
                                                                              aCCTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCTAAGACATAAACAACt                                                       <  2:650389/140‑1 (MQ=255)
                                                                              aCCTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCTAAGACATAAACAACt                                                       <  2:722654/140‑1 (MQ=255)
                                                                               ccTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCTAAGACATAAACAACTg                                                      >  2:701284/1‑140 (MQ=255)
                                                                               ccTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCTAAGACATAAACAACTg                                                      >  2:150305/1‑140 (MQ=255)
                                                                                cTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCTAAGACATAAACAACTgg                                                     >  2:808804/1‑140 (MQ=255)
                                                                                cTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCTAAGACATAAACAACTgg                                                     <  1:178812/140‑1 (MQ=255)
                                                                                cTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCTAAGACATAAACAACTgg                                                     <  1:312815/140‑1 (MQ=255)
                                                                                 tGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCTAAGACATAAACAACTGGc                                                    <  2:170702/140‑1 (MQ=255)
                                                                                  gagagaTATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCTAAGACATAAACAACTGGCt                                                   >  1:728862/1‑140 (MQ=255)
                                                                                  gagagaTATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCTAAGACATAAACAACTGGCt                                                   >  2:674825/1‑140 (MQ=255)
                                                                                    gagaTATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCTAAGACATAAACAACTGGCTAc                                                 >  2:389448/1‑140 (MQ=255)
                                                                                      aatatTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCACCTTTTTCTTAAACAGACTTGGGCTAAGACATAAACAACTGGCTACCa                                               <  2:465050/139‑1 (MQ=255)
                                                                                           ttttACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCTAAGACATAAACAACTGGCTACCATACTa                                          <  2:868606/140‑1 (MQ=255)
                                                                                               aCCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCTAAGACATAAACAACTGGCTACCATACTAAGAt                                      >  2:115923/1‑140 (MQ=255)
                                                                                                  gTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCTAAGACATAAACAACTGGCTACCATACTAAGATTcc                                   >  1:7565/1‑140 (MQ=255)
                                                                                                  gTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGCGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCTAAGACATAAACAACTGGCTACCATACTAAGATTcc                                   >  1:203681/1‑140 (MQ=255)
                                                                                                  gTCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGGGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCTAAGACATAAACAACTGGCTACCATACTAAGATTcc                                   >  1:688395/1‑140 (MQ=255)
                                                                                                   tCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCTAAGACATAAACAACTGGCTACCATACTAAGATTCCa                                  >  1:956788/1‑140 (MQ=255)
                                                                                                   tCCATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCTAAGACATAAACAACTGGCTACCATACTAAGATTCCa                                  >  1:310730/1‑140 (MQ=255)
                                                                                                    ccATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCTAAGACATAAACAACTGGCTACCATACTAAGATTCCat                                 >  2:913340/1‑139 (MQ=255)
                                                                                                    ccATCATTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCTAAGACATAAACAACTGGCTACCATACTAAGATTCCAg                                 <  1:452562/140‑1 (MQ=255)
                                                                                                        catTAATTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCTAAGACATAAACAACTGGCTACCATACTAAGATTCCAGTCtt                             <  1:103450/140‑1 (MQ=255)
                                                                                                             aTTCATTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCTAAGACATAAACAACTGGCTACCATACTAAGATTCCAGTCTTTGTGa                        >  2:980828/1‑140 (MQ=255)
                                                                                                                 aTTTACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCTAAGACATAAACAACTGGCTACCATACTAAGATTCCAGTCTTTGTGAatat                    >  1:467726/1‑140 (MQ=255)
                                                                                                                  tttACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCTAAGACATAAACAACTGGCTACCATACTAAGATTCCAGTCTTTGTGAATATc                   >  2:864985/1‑140 (MQ=255)
                                                                                                                  tttACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCTAAGACATAAACAACTGGCTACCATACTAAGATTCCAGTCTTTGTGAATATc                   >  1:114869/1‑140 (MQ=255)
                                                                                                                  tttACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCTAAGACATAAACAACTGGCTACCATACTAAGATTCCAGTCTTTGTGAATATc                   >  1:1027241/1‑140 (MQ=255)
                                                                                                                  tttACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCTAAGACATAAACAACTGGCTACCATACTAAGATTCCAGTCTTTGTGAATATc                   >  1:1026822/1‑140 (MQ=255)
                                                                                                                   ttACGGCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCTAAGACATAAACAACTGGCTACCATACTAAGATTCCGGTCTTTGTGAATATct                  >  2:834654/1‑139 (MQ=255)
                                                                                                                        gCATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCTAAGACATAAACAACTGGCTACCATACTAAGATTCCAGTCTTTGTGAATATCGCTTTc             <  1:186785/140‑1 (MQ=255)
                                                                                                                         cATAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCTAAGACATAAACAACTGGCTACCATACTAAGATTCCAGTCTTTGTGAATATCGCTTTCa            <  2:956788/140‑1 (MQ=255)
                                                                                                                           tAACGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCTAAGACATAAACAACTGGCTACCATACTAAGATTCCAGTCTTTGTGAATATCGCTTTCaat          >  1:146798/1‑140 (MQ=255)
                                                                                                                              cGCATGCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCTAAGACATAAACAACTGGCTACCATACTAAGATTCCAGTCTTTGTGAATATCGCTTTCaataat       <  1:975391/140‑1 (MQ=255)
                                                                                                                                   gCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCTAAGACATAAACAACTGGCTACCATACTAAGATTCCAGTCTTTGTGAATATCGCTTTCAATAATTTGAt  >  2:695088/1‑140 (MQ=255)
                                                                                                                                   gCGGCATGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCTAAGACATAAACAACTGGCTACCATACTAAGATTCCAGTCTTTGTGAATATCGCTTTCAATAATTTGAt  >  2:240148/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                     
TGCAGCGGCGTCATACCGTAGAAGTCTTTAAAGACAGAAATAAAGTACGACGTACTGTTGTAGCCGCAGGACTGTGATACCTGAGAGATATTTTTACCGTCCATCATTAATTCATTTACGGCATAACGCATGCGGCAGGTGGTGATTATTTGGCTATAACTGGTGTTTTCGCTTTTCAACTTTTTCTTTAACAGACTTGGGCTAAGACATAAACAACTGGCTACCATACTAAGATTCCAGTCTTTGTGAATATCGCTTTCAATAATTTGAT  >  NC_000913/4337205‑4337475

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A