Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F48 I1 R1 508 125.6 4303852 99.2% 4269421 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,337,675 C→A T85T (ACG→ACT)  adiY ← DNA‑binding transcriptional activator AdiY

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,337,6750CA100.0% 666.9 / NA 193T85T (ACG→ACT) adiYDNA‑binding transcriptional activator AdiY
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (75/118);  total (75/118)

Only 100 of 198 total aligned reads displayed.

AGAAAACGGGATAGCACCGTGAATAATAATGCGCGTGTTCGTTCCTTTTCTGACTCAGTTTCTGCGGGCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGCGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTTGATGATGTCGTGACTAATATGAGCAACCAAAGTGTTGTTAAGAGAGGAGACGTCGATAATATTATTTTCA  >  NC_000913/4337541‑4337810
                                                                                                                                      |                                                                                                                                       
ttttctcGGGATAGCACCGTGAATAATAATGCGCGTGTTCGTTCCTTTTCTGACTCAGTTTCTGCGGGCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAgc                                                                                                                                    >  2:1151835/7‑140 (MQ=255)
 gaAAACGGGATAGCACCGTGAATAATAATGCGCGTGTTCGTTCCTTTTCTGACTCAGTTTCTGCGGGCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAgcg                                                                                                                                   <  2:1384442/140‑1 (MQ=255)
    aaCGGGATAGCACCGTGAATAATAATGCGCGTGTTCGTTCCTTTTCTGACTCAGTTTCTGCGGGCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGTGAGTAGCGCTa                                                                                                                                <  1:1644037/140‑1 (MQ=255)
    aaCGGGATAGCACCGTGAATAATAATGCGCGTGTTCGTTCCTTTTCTGACTCAGTTTCTGCGGGCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTa                                                                                                                                <  1:2046034/140‑1 (MQ=255)
    aaCGGGATAGCACCGTGAATAATAATGCGCGTGTTCGTTCCTTTTCTGACTCAGTTTCTGCGGGCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTa                                                                                                                                <  2:1174403/140‑1 (MQ=255)
     aCGGGATAGCACCGTGAATAATAATGCGCGTGTTCGTTCCTTTTCTGACTCAGTTTCTGCGGGCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTAc                                                                                                                               <  1:1835987/140‑1 (MQ=255)
       gggATAGCACCGTGAATAATAATGCGCGTGTTCGTTCCTTTTCTGACTCAGTTTCTGCGGGCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAgcgc                                                                                                                                  >  2:1661937/1‑135 (MQ=255)
       gggATAGCACCGTGAATAATAATGCGCGTGTTCGTTCCTTTTCTGACTCAGTTTCTGCGGGCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAgcgc                                                                                                                                  >  2:1536989/1‑135 (MQ=255)
       gggATAGCACCGTGAATAATAATGCGCGTGTTCGTTCCTTTTCTGACTCAGTTTCTGCGGGCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAgcgc                                                                                                                                  <  1:1536989/135‑1 (MQ=255)
       gggATAGCACCGTGAATAATAATGCGCGTGTTCGTTCCTTTTCTGACTCAGTTTCTGCGGGCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGt                                                                                                                             >  2:1298298/1‑140 (MQ=255)
       gggATAGCACCGTGAATAATAATGCGCGTGTTCGTTCCTTTTCTGACTCAGTTTCTGCGGGCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGGATGGGAGAAGCGCTACGt                                                                                                                             >  1:423538/1‑140 (MQ=255)
         gATAGCACCGTGAATAATAATGCGCGTGTTCGTTCCTTTTCTGACTCAGTTTCTGCGGGCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTg                                                                                                                           <  2:1289933/140‑1 (MQ=255)
         gATAGCACCGTGAATAATAATGCGCGTGTTCGTTCCTTTTCTGACTCAGTTTCTGCGGGCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTg                                                                                                                           <  1:1555091/140‑1 (MQ=255)
         gATAGCACCGTGAATAATAATGCGCGTGTTCGTTCCTTTTCTGACTCAGTTTCTGCGGGCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTg                                                                                                                           <  2:2086908/140‑1 (MQ=255)
           tAGCACCGTGAATAATAATGCGCGTGTTCGTTCCTTTTCTGACTCAGTTTCTGCGGGCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGcc                                                                                                                         <  1:1883357/140‑1 (MQ=255)
             acACCGTGAATAATAATGCGCGTGTTCGTTCCTTTTCTGACTCAGTTTCTGCGGGCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCAt                                                                                                                       <  2:79349/139‑1 (MQ=255)
                   tGAATAATAATGCGCGTGTTCGTTCCTTTTCTGACTCAGTTTCTGCGGGCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGt                                                                                                                 >  1:185196/1‑140 (MQ=255)
                   tGAATAATAATGCGCGTGTTCGTTCCTTTTCTGACTCAGTTTCTGCGGGCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGt                                                                                                                 >  1:679442/1‑140 (MQ=255)
                   tGAATAATAATGCGCGTGTTCGTTCCTTTTCTGACTCAGTTTCTGCGGGCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGt                                                                                                                 >  2:321054/1‑140 (MQ=255)
                      ataataatGCGCGTGTTCGTTCCTTTTCTGACTCAGTTTCTGCGGGCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTAtt                                                                                                              <  2:12600/140‑1 (MQ=255)
                            atGCGCGTGTTCGTTCCTTTTCTGACTCAGTTTCTGCGGGCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCgag                                                                                                        >  1:795698/1‑140 (MQ=255)
                             tGCGCGTGTTCGTTCCTTTTCTGACTCAGTTTCTGCGGGCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATAc                                                                                                                     >  2:1371085/1‑126 (MQ=255)
                             tGCGCGTGTTCGTTCCTTTTCTGACTCAGTTTCTGCGGGCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCgaga                                                                                                       >  2:691357/1‑140 (MQ=255)
                             tGCGCGTGTTCGTTCCTTTTCTGACTCAGTTTCTGCGGGCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCgaga                                                                                                       <  2:385454/140‑1 (MQ=255)
                             tGCGCGTGTTCGTTCCTTTTCTGACTCAGTTTCTGCGGGCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCgaga                                                                                                       >  1:460888/1‑140 (MQ=255)
                             tGCGCGTGTTCGTTCCTTTTCTGACTCAGTTTCTGCGGGCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCgaga                                                                                                       <  1:1028566/140‑1 (MQ=255)
                             tGCGCGTGTTCGTTCCTTTTCTGACTCAGTTTCTGCGGGCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCgaga                                                                                                       <  2:1748470/140‑1 (MQ=255)
                               cgcgTGTTCGTTCCTTTTCTGACTCAGTTTCTGCGGGCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCgagaga                                                                                                     >  1:1124239/1‑140 (MQ=255)
                               cgcgTGTTCGTTCCTTTTCTGACTCAGTTTCTGCGGGCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCgagaga                                                                                                     >  1:837832/1‑140 (MQ=255)
                               cgcgTGTTCGTTCCTTTTCTGACTCAGTTTCTGCGGGCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCgagaga                                                                                                     >  1:132298/1‑140 (MQ=255)
                               cgcgTGTTCGTTCCTTTTCTGACTCAGTTTCTGCGGGCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCgagaga                                                                                                     >  1:1168203/1‑140 (MQ=255)
                               cgcgTGTTCGTTCCTTTTCTGACTCAGTTTCTGCGGGCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTACGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCgagaga                                                                                                     >  2:1115984/1‑140 (MQ=255)
                                gcgTGTTCGTTCCTTTTCTGACTCAGTTTCTGCGGGCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGAt                                                                                                    >  2:508309/1‑140 (MQ=255)
                                  gtgtTCGTTCCTTTTCTGACTCAGTTTCTGCGGGCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATAGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCt                                                                                                  >  2:1615388/1‑140 (MQ=255)
                                              tttCTGACTCAGTTTCTGCGGGCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAAc                                                                                      <  2:1998816/140‑1 (MQ=255)
                                              tttCTGACTCAGTTTCTGCGGACATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAAc                                                                                      <  2:798181/140‑1 (MQ=255)
                                                tCTGACTCAGTTTCTGCGGGCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCg                                                                                    <  1:217298/140‑1 (MQ=255)
                                                    aCTCAGTTTCTGCGGGCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCgg                                                                                   <  1:1938604/137‑1 (MQ=255)
                                                    aCTCAGTTTCTGCGGGCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCgg                                                                                   >  2:1938604/1‑137 (MQ=255)
                                                    aCTCAGTTTCTGCGGGCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAgg                                                                                <  1:1265100/140‑1 (MQ=255)
                                                    aCTCAGTTTCTGCGGGCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAgg                                                                                <  1:1716118/140‑1 (MQ=255)
                                                     cTCAGTTTCTGCGGGCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGt                                                                               <  1:691357/140‑1 (MQ=255)
                                                     cTCAGTTTCTGCGGGCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGt                                                                               <  1:2138591/140‑1 (MQ=255)
                                                      tCAGTTTCTGCGGGCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTa                                                                              <  1:745195/140‑1 (MQ=255)
                                                        aGTTTCTGCGGGCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAAt                                                                            >  2:1125722/1‑140 (MQ=255)
                                                        aGTTTCTGCGGGCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAAt                                                                            <  2:882334/140‑1 (MQ=255)
                                                        aGTTTCTGCGGGCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAAt                                                                            <  2:423538/140‑1 (MQ=255)
                                                              tGCGGGCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTtgt                                                                      >  2:733407/1‑139 (MQ=255)
                                                                ggggCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTtgatg                                                                    <  2:361099/139‑1 (MQ=255)
                                                                cGGGCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTtgatg                                                                    <  1:889235/140‑1 (MQ=255)
                                                                cGGGCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTtgatg                                                                    <  2:959621/140‑1 (MQ=255)
                                                                  ggCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTTgatgat                                                                  <  1:969352/140‑1 (MQ=255)
                                                                    catcatGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGt                                                                               <  1:146098/125‑1 (MQ=255)
                                                                    catcatGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGt                                                                               >  2:146098/1‑125 (MQ=255)
                                                                    catcatGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTTGATGATGt                                                                <  2:132298/140‑1 (MQ=255)
                                                                    catcatGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTTGATGATGt                                                                <  1:1736617/140‑1 (MQ=255)
                                                                    catcatGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTTGATGATGt                                                                <  1:1445001/140‑1 (MQ=255)
                                                                      tcatGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTTGATGATGTCg                                                              <  2:185196/140‑1 (MQ=255)
                                                                         tGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTTGATGATGTCGTGa                                                           <  2:233340/140‑1 (MQ=255)
                                                                               gtTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTTGATGATGTCGTGACTAatt                                                     >  2:874021/1‑139 (MQ=255)
                                                                                ttGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTTGATGATGTCGTGACTAatat                                                    >  2:2067015/1‑140 (MQ=255)
                                                                                ttGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTTGATGATGTCGTGACTAatat                                                    >  2:663466/1‑140 (MQ=255)
                                                                                 tGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTTGATGATGTCGTGACTAATATg                                                   <  1:508309/140‑1 (MQ=255)
                                                                                   cgcgGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTTGATGATGTCGTGACTAATATGAg                                                 <  2:1137052/140‑1 (MQ=255)
                                                                                   cgcgGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTTGATGATGTCGTGACTAATATGAg                                                 <  1:1615388/140‑1 (MQ=255)
                                                                                   cgcgGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTTGATGATGTCGTGACTAATATGAg                                                 >  2:1761268/1‑140 (MQ=255)
                                                                                   cgcgGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTTGATGATGTCGTGACTAATATGAg                                                 <  1:1604897/140‑1 (MQ=255)
                                                                                   cgcgGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTTGATGATGTCGTGACTAATATGAg                                                 <  2:837832/140‑1 (MQ=255)
                                                                                   cgcgGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTTGATGATGTCGTGACTAATATGAg                                                 >  1:1373795/1‑140 (MQ=255)
                                                                                      ggCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTTGATGATGTCGTGACTAATATGAGCaa                                              <  1:1301473/140‑1 (MQ=255)
                                                                                        cAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTTGATGATGTCGTGACTAATATGAGCAAcc                                            >  1:1525074/1‑140 (MQ=255)
                                                                                        cAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTTGATGATGTCGTGACTAATATGAGCAAcc                                            >  1:114560/1‑140 (MQ=255)
                                                                                        cAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTTGATGATGTCGTGACTAATATGAGCAAcc                                            >  1:11823/1‑140 (MQ=255)
                                                                                         aaCGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTTGATGATGTCGTGACTAATATGAGCAACCa                                           <  2:1450520/140‑1 (MQ=255)
                                                                                         aaCGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTTGATGATGTCGTGACTAATATGAGCAACCa                                           <  1:378321/140‑1 (MQ=255)
                                                                                         aaCGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTTGATGATGTCGTGACTAATATGAGCAACCa                                           <  2:460888/140‑1 (MQ=255)
                                                                                           cgcgAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTTGATGATGTCGTGACTAATATGAGCAACCaaa                                         <  2:179550/140‑1 (MQ=255)
                                                                                           cgcgAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTTGATGATGTCGTGACTAATATGAGCAACCaaa                                         <  2:1344131/140‑1 (MQ=255)
                                                                                           cgcgAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTTGATGATGTCGTGACTAATATGAGCAACCaaa                                         <  1:1298298/140‑1 (MQ=255)
                                                                                           agcgAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTTGATGATGTCGTGACTAATATGAGCAACCaaa                                         <  2:998072/139‑1 (MQ=255)
                                                                                             cgAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTTGATGATGTCGTGACTAATATGAGCAACCAAAgt                                       <  2:671782/140‑1 (MQ=255)
                                                                                              gAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTTGATGATGTCGTGACTAATATGAGCAACCAAAgtg                                      <  1:1761268/140‑1 (MQ=255)
                                                                                              gAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTTGATGATGTCGTGACTAATATGAGCAACCAAAgtg                                      <  2:1193372/140‑1 (MQ=255)
                                                                                                  gACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTTGATGATGTCGTGACTAATATGAGCAACCAAAGtgttgt                                  <  1:1448844/140‑1 (MQ=255)
                                                                                                     gTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTTGATGATGTCGTGACTAATATGAGCAACCAAAGTGTTGTTaa                               <  2:1270879/140‑1 (MQ=255)
                                                                                                      tCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTTGATGATGTCGTGACTAATATGAGCAACCAAAGTGTTGTTAag                              <  1:558247/140‑1 (MQ=255)
                                                                                                      tCTGGCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTTGATGATGTCGTGACTAATATGAGCAACCAAAGTGTTGTTAag                              >  1:306993/1‑140 (MQ=255)
                                                                                                          gCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTTGATGATGTCGTGACTAATATGAGCAACCAAAGTGTTGTTAagagag                          >  1:877573/1‑140 (MQ=255)
                                                                                                          gCGTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTTGATGATGTCGTGACTAATATGAGCAACCAAAGTGTTGTTAagagag                          <  1:1819161/140‑1 (MQ=255)
                                                                                                            gTCAGGCATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTTGATGATGTCGTGACTAATATGAGCAACCAAAGTGTTGTTAAGAgagga                        <  1:1044661/140‑1 (MQ=255)
                                                                                                             tCAGGCTTGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGCATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTTGATGATGTCGTGACTAATATGAGCAACCAAAGTGTTGTTAAGAgaggag                       >  1:1470688/1‑140 (MQ=255)
                                                                                                                  cATGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTTGATGATGTCGTGACTAATATGAGCAACCAAAGTGTTGTTAAGAGAGGAGACGTc                  <  1:2000887/140‑1 (MQ=255)
                                                                                                                    tGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTTGATGATGTCGTGACTAATATGAGCAACCAAAGTGTTGTTAAGAGAGGAGACGTCGa                <  2:306993/140‑1 (MQ=255)
                                                                                                                    tGGCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTTGATGATGTCGTGACTAATATGAGCAACCAAAGTGTTGTTAAGAGAGGAGACGTCGa                <  1:1686551/140‑1 (MQ=255)
                                                                                                                     ggCAGGGTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTTGATGATGTCGTGACTAATATGAGCAACCAAAGTGTTGTTAAGAGAGGAGACGTCGat               >  1:135792/1‑140 (MQ=255)
                                                                                                                           gTGAGTATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTTGATGATGTCGTGACTAATATGAGCAACCAAAGTGTTGTTAAGAGAGGAGACGTCGATAAtatt         >  1:1703721/1‑140 (MQ=255)
                                                                                                                                tATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTTGATGATGTCGTGACTAATATGAGCAACCAAAGTGTTGTTAAGAGAGGAGACGTCGATAATATTAtttt    <  2:1612287/140‑1 (MQ=255)
                                                                                                                                tATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTTGATGATGTCGTGACTAATATGAGCAACCAAAGTGTTGTTAAGAGAGGAGACGTCGATAATATTAtttt    <  2:1706857/140‑1 (MQ=255)
                                                                                                                                tATGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATCCAGAAACCGGAGGAAATCTTTGATGATGACGCGACTAATATGAGCAACCAAAGTGTTGTTAAGAGAGGAGACGCGGATAATATTAtttt    >  1:1132622/1‑140 (MQ=255)
                                                                                                                                  tGGGAGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTTGATGATGTCGTGACTAATATGAGCAACCAAAGTGTTGTTAAGAGAGGAGACGTCGATAATATTATTTTca  <  1:321054/140‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                       
AGAAAACGGGATAGCACCGTGAATAATAATGCGCGTGTTCGTTCCTTTTCTGACTCAGTTTCTGCGGGCATCATGCTGTGTTGCGCGGCAACGCGAAAGACGTCTGGCGTCAGGCATGGCAGGGTGAGTATGGGCGTAGCGCTACGTTGCCATACTGGTATTTGCGAGAGATCTTTATTCAGAAACCGGAGGTAATCTTTGATGATGTCGTGACTAATATGAGCAACCAAAGTGTTGTTAAGAGAGGAGACGTCGATAATATTATTTTCA  >  NC_000913/4337541‑4337810

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A