Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A6 F48 I1 R1	61	74.3	2613450	99.1%	2589928	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,347,593	C→G	P384P (CCG→CCC)	dcuB ←	anaerobic C4‑dicarboxylate transporter DcuB

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,347,593	0	C	G	100.0%	310.6 / NA	78	P384P (CCG→CCC)	dcuB	anaerobic C4‑dicarboxylate transporter DcuB
Reads supporting (aligned to +/- strand): ref base C (0/0); new base G (39/39); total (39/39)

CACCAATCAACCCCGGCAGAATAAAGCTGTGGTTGATGACGAAGCGACCGATGTGGGTGGTGCCGGAACGGTCAAACTGAATCGCTGCCAGATCGCTCGGATAAGTCGGCAGGATGTAA‑TAACCGTAGCAAGCCGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCGCCGCCAGCGCCGCAGCCTGAGAGTTTACAAACTTGGAAACCAGCAGCAGAACAATGGCATAGGCCCACGGATA  >  NC_000913/4347460‑4347727

cacCAATCAACCCCGGCAGAATAAAGCTGTGGTTGATGACGAAGCGACCGATGTGGGTGGTGCCGGAACGGTCAAACTGAATCGCTGCCAGATCGCTCGGATAAGTCGGCAGGATGTAA‑TAACCGTAGCAAGCGGGTGCt                                                                                                                                  >  2:1131873/1‑140 (MQ=255)

 acCAATCAACCCCGGCAGAATAAAGCTGTGGTTGATGACGAAGCGACCGATGTGGGTGGTGCCGGAACGGTCAAACTGAATCGCTGCCAGATCGCTCGGATAAGTCGGGAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTg                                                                                                                                 <  1:1291988/140‑1 (MQ=255)

 acCAATCAACCCCGGCAGAATAAAGCTGTGGTTGATGACGAAGCGACCGATGTGGGTGGTGCCGGAACGGTCAAACTGAATCGCTGCCAGATCGCTCGGATAAGTCGGCAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTg                                                                                                                                 >  2:690663/1‑140 (MQ=255)

  ccAATCAACCCCGGCAGAATAAAGCTGTGGTTGATGACGAAGCGACCGATGTGGGTGGTGCCGGAACGGTCAAACTGAATCGCTGCCAGATCGCTCGGATAAGTCGGCAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGa                                                                                                                                >  2:1217393/1‑140 (MQ=255)

     aTCAACCCCGGCAGAATAAAGCTGTGGTAGATGACGAAGCGACCGATGTGGGTGGTGCCGGAACGGTCAAACTGAATCGCTGCCAGATCGCTCGGATAAGTCGGCAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGc                                                                                                                             >  1:928688/1‑140 (MQ=255)

      tCAACCCCGGCAGAATAAAGCTGTGGTTGATGACGAAGCGACCGATGTGGGTGGTGCCGGAACGGTCAAACTGAATCGCTGCCAGATCGCTCGGATAAGTCGGCAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGcc                                                                                                                            <  1:864080/140‑1 (MQ=255)

       cAACCCCGGCAGAATAAAGCTGTGGTTGATGACGAAGCGACCGATGTGGGTGGTGCCGGAACGGTCAAACTGAATCGCTGCCAGATCGCTCGGATAAGTCGGCAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCa                                                                                                                           <  1:1011273/140‑1 (MQ=255)

       cAACCCCGGCAGAATAAAGCTGTGGTTGATGACGAAGCGACCGATGTGGGTGGTGCCGGAACGGTCAAACTGAATCGCTGCCAGATCGCTCGGATAAGTCGGCAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCa                                                                                                                           <  1:351097/140‑1 (MQ=255)

       cAACCCCGGCAGAATAAAGCTGTGGTTGATGACGAAGCGACCGATGTGGGTGGTGCCGGAACGGTCAAACTGAATCGCTGCCAGATCGCTCGGATAAGTCGGCAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCa                                                                                                                           <  2:641893/140‑1 (MQ=255)

       cAACCCCGGCAGAATAAAGCTGTGGTTGATGACGAAGCGACCGATGTGGGTGGTGCCGGAACGGTCAAACTGAATCGCTGCCAGATCGCTCGGATAAGTCGGCAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCa                                                                                                                           <  1:1131873/140‑1 (MQ=255)

       cAACCCCGGCAGAATAAAGCTGTGGTTGATGACGAAGCGACCGATGTGGGTGGTGCCGGAACGGTCAAACTGAATCGCTGCCAGATCGCTCGGATAAGTCGGCAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCa                                                                                                                           <  2:310758/140‑1 (MQ=255)

        aaCCCCGGCAGAATAAAGCTGTGGTTGATGACGAAGCGACCGATGTGGGTGGTGCCGGAACGGTCAAACTGAATCGCTGCCAGATCGCTCGGATAAGTCGGCAGGATGTAATTAACCGTAGCAAGCGGGTGCTGAAGCCa                                                                                                                           <  2:408683/140‑1 (MQ=255)

         aCCCCGGCAGAATAAAGCTGTGGTTGATGACGAAGCGACCGATGTGGGTGGTGCCGGAACGGTCAAACTGAATCGCTGCCAGATCGCTCGGATAAGTCGGCAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCACg                                                                                                                         >  1:1091988/1‑140 (MQ=255)

            ccGGCAGAATAAAGCTGTGGTTGATGACGAAGCGACCGATGTGGGTGGTGCCGGAACGGTCAAACTGAATCGCTGCCAGATCGCTCGGATAAGTCGGCAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCACGATg                                                                                                                      <  1:385193/140‑1 (MQ=255)

             cGGCAGAATAAAGCTGTGGTTGATGACGAAGCGACCGATGTGGGTGGTGCCGGAACGGTCAAACTGAATCGCTGCCAGATCGCTCGGATAAGTCGGCAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCACGATGt                                                                                                                     >  2:562757/1‑140 (MQ=255)

              ggCAGAATAAAGCTGTGGTTGATGACGAAGCGACCGATGTGGGTGGTGCCGGAACGGTCAAACTGAATCGCTGCCAGATCGCTCGGATAAGTCGGCAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCACGATGTa                                                                                                                    >  1:676242/1‑140 (MQ=255)

                      aaaGCTGTGGTTGATGACGAAGCGACCGATGTGGGTGGTGCCGGAACGGTCAAACTGAATCGCTGCCAGATCGCTCGGATAAGTCGGCAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGAt                                                                                                            <  2:531106/140‑1 (MQ=255)

                         gCTGTGGTTGATGACGAAGCGACCGATGTGGGTGGTGCCGGAACGGTCAAACTGAATCGCTGCCAGATCGCTCGGATAAGTCGGCAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCaa                                                                                                         <  2:613481/140‑1 (MQ=255)

                         gCTGTGGTTGATGACGAAGCGACCGATGTGGGTGGTGCCGGAACGGTCAAACTGAATCGCTGCCAGATCGCTCGGATAAGTCGGCAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCaa                                                                                                         <  2:734413/140‑1 (MQ=255)

                         acTGTGGTTGATGACGAAGCGACCGATGTGGGTGGTGCCGGAACGGTCAAACTGAATCGCTGCCAGATCGCTCGGATAAGTCGGCAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCaa                                                                                                         <  2:120769/139‑1 (MQ=255)

                             tgGTTGATGACGAAGCGACCGATGTGGGTGGTGCCGGAACGGTCAAACTGAATCGCTGCCAGATCGCTCGGATAAGTCGGCAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGcc                                                                                                     >  2:465679/1‑140 (MQ=255)

                                       cGAAGCGACCGATGTGGGTGGTGCCGGAACGGTCAAACTGAATCGCTGCCAGATCGCTCGGATAAGTCGGCAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAgc                                                                                           <  1:1217393/140‑1 (MQ=255)

                                           gCGACCGATGTGGGTGGTGCCGGAACGGTCAAACTGAATCGCTGCCAGATCGCTCGGATAAGTCGGCAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGa                                                                                       <  1:562757/140‑1 (MQ=255)

                                            cGACCGATGTGGGTGGTGCCGGAACGGTCAAACTGAATCGCTGCCAGATCGCTCGGATAAGTCGGCAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGAc                                                                                      >  2:1215332/1‑140 (MQ=255)

                                            cGACCGATGTGGGTGGTGCCGGAACGGTCAAACTGAATCGCTGCCAGATCGCTCGGATAAGTCGGCAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGAc                                                                                      >  1:1022780/1‑140 (MQ=255)

                                                 gATGTGGGTGGTGCCGGAACGGTCAAACTGAATCGCTGCCAGATCGCTCGGATAAATCGGCAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGaa                                                                                 <  2:968077/140‑1 (MQ=255)

                                                           gtgCCGGAACGGTCAAACTGAATCGCTGCCAGATCGCTCGGATAAGTCGGCAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATcgccgc                                                                       >  1:270151/1‑140 (MQ=255)

                                                            tgCCGGAACGGTCAAACTGAATCGCTGCCAGATCGCTCGGATAAGTCGGCAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCgccgcc                                                                      >  1:543371/1‑140 (MQ=255)

                                                             gCCGGAACGGTCAAACTGAATCGCTGCCAGATCGCTCGGATAAGTCGGCAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCGCCGCCa                                                                     >  1:540566/1‑140 (MQ=255)

                                                                      gTCAAACTGAATCGCTGCCAGATCGCTCGGATAAGTCGGCAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCGCCGCCAGCGCCGCAg                                                            >  2:93341/1‑140 (MQ=255)

                                                                      gTCAAACTGAATCGCTGCCAGATCGCTCGGATAAGTCGGCAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCGCCGCCAGCGCCGCAg                                                            >  1:131457/1‑140 (MQ=255)

                                                                      gTCAAACTGAATCGCTGCCAGATCGCTCGGATAAGTCGGCAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCGCCGCCAGCGCCGCAg                                                            >  2:46044/1‑140 (MQ=255)

                                                                      gTCAAACTGAATCGCTGCCAGATCGCTCGGATAAGTCGGCAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCGCCGCCAGCGCCGCAg                                                            >  2:1044754/1‑140 (MQ=255)

                                                                            cTGAATCGCTGCCAGATCGCTCGGATAAGTCGGCAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCGCCGCCAGCGCCGCAGCCTgag                                                      <  1:46044/140‑1 (MQ=255)

                                                                            atGAAGCGCTGCCAGATCGCTCGGATAAGTCGGAAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCGCCGCCAGCGCCGCAGCCTgag                                                      <  2:1143272/139‑1 (MQ=255)

                                                                                 tCGCTGCCAGATCGCTCGGATAAGTCGGCAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCGCCGCCAGCGCCGCAGCCTGAGAGttt                                                 >  1:942121/1‑140 (MQ=255)

                                                                                     tGCCAGATCGCTCGGATAAGTCGGCAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGTCCGGAACAATCGCCGCCAGCGCCGCAGCCTGAGAGTTTACaa                                             <  2:1000785/140‑1 (MQ=255)

                                                                                     tGCCAGATCGCTCGGATAAGTCGGCAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCGCCGCCAGCGCCGCAGCCTGAGAGTTTACaa                                             <  2:131457/140‑1 (MQ=255)

                                                                                     tGCCAGATCGCTCGGATAAGTCGGCAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCGCCGCCAGCGCCGCAGCCTGAGAGTTTACaa                                             <  2:1091988/140‑1 (MQ=255)

                                                                                     tGCCAGATCGCTCGGATAAGTCGGCAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCGCCGCCAGCGCCGCAGCCTGAGAGTTTACaa                                             <  1:783376/140‑1 (MQ=255)

                                                                                               cTCGGATAAGTCGGCAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCGCCGCCAGCGCCGCAGCCTGAGAGTTTACAAACTTGGAAAc                                   >  1:94743/1‑140 (MQ=255)

                                                                                               cTCGGATAAGTCGGCAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCGCCGCCAGCGCCGCAGCCTGAGAGTTTACAAACTTGGAAAc                                   >  1:536501/1‑140 (MQ=255)

                                                                                               cTCGGATAAGTCGGCAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCGCCGCCAGCGCCGCAGCCTGAGAGTTTACAAACTTGGAAAc                                   >  1:961583/1‑140 (MQ=255)

                                                                                               cTCGGATAAGTCGGCAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCGCCGCCAGCGCCGCAGCCTGAGAGTTTACAAACTTGGAAAc                                   >  2:936872/1‑140 (MQ=255)

                                                                                               cTCGGATAAGTCGGCAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCGCCGCCAGCGCCGCAGCCTGAGAGTTTACAAACTTGGAAAc                                   >  1:1224295/1‑140 (MQ=255)

                                                                                                tCGGATAAGTCGGCAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCGCCGCCAGCGCCGCAGCCTGAGAGTTTACAAACTTGGAAAcc                                  <  2:543371/140‑1 (MQ=255)

                                                                                                 cGGATAAGTCGGCAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCGCCGCCAGCGCCGCAGCCTGAGAGTTTACAAACTTGGAAACca                                 >  1:1056191/1‑140 (MQ=255)

                                                                                                     aaaGTCGGCAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCGCCGCCAGCGCCGCAGCCTGAGAGTTTACAAACTTGGAAACcagcag                             <  2:536501/139‑1 (MQ=255)

                                                                                                     aaaGTCGGCAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCGCCGCCAGCGCCGCAGCCTGAGAGTTTACAAACTTGGAAACcagcag                             <  2:156057/139‑1 (MQ=255)

                                                                                                        gTCGGCAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCGCCGCCAGCGCCGCAGCCTGAGAGTTTACAAACTTGGAAACcagcagcag                          <  1:1066575/140‑1 (MQ=255)

                                                                                                        gTCGGCAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCGCCGCCAGCGCCGCAGCCTGAGAGTTTACAAACTTGGAAACcagcagcag                          <  1:156615/140‑1 (MQ=255)

                                                                                                        gTCGGCAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCGCCGCCAGCGCCGCAGCCTGAGAGTTTACAAACTTGGAAACcagcagcag                          <  1:722285/140‑1 (MQ=255)

                                                                                                        gTCGGCAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCGCCGCCAGCGCCGCAGCCTGAGAGTTTACAAACTTGGAAACcagcagcag                          <  2:1030195/140‑1 (MQ=255)

                                                                                                         tCGGCAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCGCCGCCAGCGCCGCAGCCTGAGAGTTTACAAACTTGGAAACCAGCAGCAGa                         >  2:1183528/1‑140 (MQ=255)

                                                                                                            gCAGGATGTAA‑TTACCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCGCCGCCAGCGCCGCAGCCTGAGAGTTTACAAACTTGGAAACCAGCAGCAGAACa                      >  2:503882/1‑140 (MQ=255)

                                                                                                             cAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCGCCGCCAGCGCCGCAGCCTGAGAGTTTACAAACTTGGAAACCAGCAGCAGAACaa                     <  1:231279/140‑1 (MQ=255)

                                                                                                             cAGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCGCCGCCAGCGCCGCAGCCTGAGAGTTTACAAACTTGGAAACCAGCAGCAGAACaa                     <  2:928688/140‑1 (MQ=255)

                                                                                                              aGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCGCCGCCAGCGCCGCAGCCTGAGAGTTTACAAACTTGGAAACCAGCAGCAGAACAAt                    >  2:160476/1‑140 (MQ=255)

                                                                                                              aGGATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCGCCGCCAGCGCCGCAGCCTGAGAGTTTACAAACTTGGAAACCAGCAGCAGAACAAt                    >  2:1195356/1‑140 (MQ=255)

                                                                                                                gATGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCGCCGCCAGCGCCGCAGCCTGAGAGTTTACAAACTTGGAAACCAGCAGCAGAACAATgg                  <  1:1215332/140‑1 (MQ=255)

                                                                                                                  tGTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCGCCGCCAGCGCCGCAGCCTGAGAGTTTACAAACTTGGAAACCAGCAGCAGAACAATGGCa                <  1:690663/140‑1 (MQ=255)

                                                                                                                   gTAA‑TAACCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCGCCGCCAGCGCCGCAGCCTGAGAGTTTACAAACTTGGAAACCAGCAGCAGAACAATGGCAt               <  2:846338/140‑1 (MQ=255)

                                                                                                                     aa‑taaCCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCGCCGCCAGCGCCGCAGCCTGAGAGTTTACAAACTTGGAAACCAGCAGCAGAACAATGGCATAg             >  1:1296813/1‑140 (MQ=255)

                                                                                                                      a‑taaCCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCGCCGCCAGCGCCGCAGCCTGAGAGTTTACAAACTTGGAAACCAGCAGCAGAACAATGGCATAgg            <  1:1000415/140‑1 (MQ=255)

                                                                                                                      a‑taaCCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCGCCGCCAGCGCCGCAGCCTGAGAGTTTACAAACTTGGAAACCAGCAGCAGAACAATGGCATAgg            <  1:465679/140‑1 (MQ=255)

                                                                                                                         aaCCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCGCCGCCAGCGCCGCAGCCTGAGAGTTTACAAACTTGGAAACCAGCAGCAGAACAATGGCATAGGcc          <  2:270151/140‑1 (MQ=255)

                                                                                                                         aaCCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCGCCGCCAGCGCCGCAGCCTGAGAGTTTACAAACTTGGAAACCAGCAGCAGAACAATGGCATAGGcc          <  2:836027/140‑1 (MQ=255)

                                                                                                                         aaCCGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCGCCGCCAGCGCCGCAGCCTGAGAGTTTACAAACTTGGAAACCAGCAGCAGAACAATGGCATAGGcc          <  2:94743/140‑1 (MQ=255)

                                                                                                                           ccGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCGCCGCCAGCGCCGCAGCCTGAGAGTTTACAAACTTGGAAACCAGCAGCAGAACAATGGCATAGGCCCa        >  2:1210303/1‑140 (MQ=255)

                                                                                                                           ccGTAGCAAGCGGGTGCTGAAGCCACGATGCATGCCGCATCAACGCCGAACGCCAGCGCGACTGGAACAATCGCCGCCAGCGCCAAAGCCTGAGAGTTTACAAACTTTGCAAACAGCAGCAGCGCAATGGCATAGGGCCa        >  2:693025/1‑140 (MQ=255)

                                                                                                                            cGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCGCCGCCAGCGCCGCAGCCTGAGAGTTTACAAACTTGGAAACCAGCAGCAGAACAATGGCATAGGCCCAc       >  2:252561/1‑140 (MQ=255)

                                                                                                                            cGTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCGCCGCCAGCGCCGCAGCCTGAGAGTTTACAAACTTGGAAACCAGCAGCAGAACAATGGCATAGGCCCAc       >  1:302664/1‑140 (MQ=255)

                                                                                                                             gTAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCGCCGCCAGCGCCGCAGCCTGAGAGTTTACAAACTTGGAAACCAGCAGCAGAACAATGGCATAGGCCCACg      >  1:563437/1‑140 (MQ=255)

                                                                                                                              tAGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCGCCGCCAGCGCCGCAGCCTGAGAGTTTACAAACTTGGAAACCAGCAGCAGAACAATGGCATAGGCCCACgt     >  2:334115/1‑139 (MQ=255)

                                                                                                                               aGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCGCCGCCAGCGCCGCAGCCTGAGAGTTTACAAACTTGGAAACCAGCAGCAGAACAATGGCATAGGCCCACGGa    >  1:685195/1‑140 (MQ=255)

                                                                                                                               aGCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCGCCGCCAGCGCCGCAGCCTGAGAGTTTACAAACTTGGAAACCAGCAGCAGAACAATGGCATAGGCCCACGGa    >  1:474574/1‑140 (MQ=255)

                                                                                                                                gCAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCGCCGCCAGCGCCGCAGCCTGAGAGTTTACAAACTTGGAAACCAGCAGCAGAACAATGGCATAGGCCCACGGAt   >  1:487251/1‑140 (MQ=255)

                                                                                                                                 cAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCGCCGCCAGCGCCGCAGCCTGAGAGTTTACAAACTTGGAAACCAGCAGCAGAACAATGGCAt               >  1:1078686/1‑127 (MQ=255)

                                                                                                                                 cAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCGCCGCCAGCGCCGCAGCCTGAGAGTTTACAAACTTGGAAACCAGCAGCAGAACAATGGCATAGGCCCACGGATa  >  1:596560/1‑140 (MQ=255)

                                                                                                                                 cAAGCGGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCAACCGGAACAATCGCCGCCAGCGCCGCAGCCTGAGAGTTTACAAACTTGGAAACCAGCAGCAGAACAATGGCAt               <  2:1078686/127‑1 (MQ=255)

CACCAATCAACCCCGGCAGAATAAAGCTGTGGTTGATGACGAAGCGACCGATGTGGGTGGTGCCGGAACGGTCAAACTGAATCGCTGCCAGATCGCTCGGATAAGTCGGCAGGATGTAA‑TAACCGTAGCAAGCCGGTGCTGAAGCCACGATGTATGCCGGATCAACGCCGATCGCCAGCGCGACCGGAACAATCGCCGCCAGCGCCGCAGCCTGAGAGTTTACAAACTTGGAAACCAGCAGCAGAACAATGGCATAGGCCCACGGATA  >  NC_000913/4347460‑4347727

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A