Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A14 F48 I1 R1	75	141.5	4784044	99.1%	4740987	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,960,200	G→T	F743L (TTC→TTA)	recC ←	exodeoxyribonuclease V subunit RecC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,960,200	0	G	T	99.0%	352.5 / ‑2.8	100	F743L (TTC→TTA)	recC	exodeoxyribonuclease V subunit RecC
Reads supporting (aligned to +/- strand): ref base G (0/1); new base T (50/49); total (50/50)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.07e-01

GGCATCCGGGTATGGAGGCAAGTAAGATGCGCTTTTACCCTTGCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGGAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGG  >  NC_000913/2960066‑2960335

ggCATCCGGGTATGGAGGCAAGTAAGATGCGCTTTTACCCTTGCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACg                                                                                                                                    <  1:632306/140‑1 (MQ=255)

 gCATCCGGGTATGGAGGCAAGTAAGATGCGCTTTTACCCTTGCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCAACGGGAAACGc                                                                                                                                   <  1:2012581/140‑1 (MQ=255)

  cATCCGGGTATGGAGGCAAGTAAGATGCGCTTTTACCCTTGCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCt                                                                                                                                  <  2:1434144/140‑1 (MQ=255)

  cATCCGGGTATGGAGGCAAGTAAGATGCGCTTTTACCCTTGCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCt                                                                                                                                  <  2:2147729/140‑1 (MQ=255)

  cATCCGGGTATGGAGGCAAGTAAGATGCGCTTTTACCCTTGCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCt                                                                                                                                  <  2:1314330/140‑1 (MQ=255)

  cATCCGGGTATGGAGGCAAGTAAGATGCGCTTTTACCCTTGCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCt                                                                                                                                  <  1:700429/140‑1 (MQ=255)

  cATCCGGGTATGGAGGCAAGTAAGATGCGCTTTTACCCTTGCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCt                                                                                                                                  <  1:1524613/140‑1 (MQ=255)

  cATCCGGGTATGGAGGCAAGTAAGATGCGCTTTTACCCTTGCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCt                                                                                                                                  <  1:1530951/140‑1 (MQ=255)

  cATCCGGGTATGGAGGCAAGTAAGATGCGCTTTTACCCTTGCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCt                                                                                                                                  <  2:1040918/140‑1 (MQ=255)

  cATCCGGGTATGGAGGCAAGTAAGATGCGCTTTTACCCTTGCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCt                                                                                                                                  <  1:80342/140‑1 (MQ=255)

  cATCCGGGTATGGAGGCAAGTAAGATGCGCTTTTACCCTTGCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCt                                                                                                                                  <  1:1621710/140‑1 (MQ=255)

    tCCGGGTATGGAGGCAAGTAAGATGCGCTTTTACCCTTGCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCa                                                                                                                                <  1:447344/140‑1 (MQ=255)

    tCCGGGTATGGAGGCAAGTAAGATGCGCTTTTACCCTTGCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCa                                                                                                                                <  1:607218/140‑1 (MQ=255)

       gggTATGGAGGCAAGTAAGATGCGCTTTTACCCTTGCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTg                                                                                                                             <  1:35869/140‑1 (MQ=255)

       gggTATGGAGGCAAGTAAGATGCGCTTTTACCCTTGCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTg                                                                                                                             <  2:2133112/140‑1 (MQ=255)

       gggTATGGAGGCAAGTAAGATGCGCTTTTACCCTTGCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTg                                                                                                                             <  2:2107805/140‑1 (MQ=255)

              gAGGCAAGTAAGATGCGCTTTTACCCTTGCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCC‑GTAGATAATGACTTTGACCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTg                                                                                                                     <  1:2006657/140‑1 (MQ=255)

                 gCAAGTAAGATGCGCTTTTACCCTTGCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGaa                                                                                                                   >  2:2316610/1‑140 (MQ=255)

                     gTAAGATGCGCTTTTACCCTTGCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGa                                                                                                               <  1:420634/140‑1 (MQ=255)

                        aGATGCGCTTTTACCCTTGCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTTCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACg                                                                                                            >  2:864171/1‑140 (MQ=255)

                        aGATGCGCTTTTACCCTTGCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACg                                                                                                            <  1:760190/140‑1 (MQ=255)

                          aTGCGCTTTTACCCTTGCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGAc                                                                                                          <  1:1870498/140‑1 (MQ=255)

                          aTGCGCTTTTACCCTTGCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGAc                                                                                                          <  1:1067422/140‑1 (MQ=255)

                           tGCGCTTTTACCCTTGCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGAcc                                                                                                         >  1:1582308/1‑140 (MQ=255)

                              gcTTTTACCCTTGCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGat                                                                                                      <  2:1476438/140‑1 (MQ=255)

                              gcTTTTACCCTTGCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGat                                                                                                      <  2:958357/140‑1 (MQ=255)

                              gcTTTTACCCTTGCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGat                                                                                                      >  1:1796112/1‑140 (MQ=255)

                              gcTTTTACCCTTGCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGat                                                                                                      <  1:1889843/140‑1 (MQ=255)

                              gcTTTTACCCTTGCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGat                                                                                                      <  2:792926/140‑1 (MQ=255)

                              gcTTTTACCCTTGCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGat                                                                                                      <  2:531458/140‑1 (MQ=255)

                               cTTTTACCCTTGCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGat                                                                                                      >  1:1192620/1‑139 (MQ=255)

                               cTTTTACCCTTGCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGat                                                                                                      <  2:1192620/139‑1 (MQ=255)

                                ttttACCCTTTCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGatat                                                                                                    >  2:392608/1‑140 (MQ=255)

                                ttttACCCTTGCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGatat                                                                                                    <  1:2316610/140‑1 (MQ=255)

                                ttttACCCTTGCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGatat                                                                                                    <  2:694401/140‑1 (MQ=255)

                                  ttACCCTTGCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAg                                                                                                  <  2:295960/140‑1 (MQ=255)

                                         tGCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGatat                                                                                           <  2:137634/140‑1 (MQ=255)

                                         tGCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGatat                                                                                           <  2:1710031/140‑1 (MQ=255)

                                          gCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGATGGGACGGACCGATTTAGCTgtttta                                                                                          >  2:247967/1‑135 (MQ=255)

                                          gCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGAtata                                                                                          >  2:902001/1‑140 (MQ=255)

                                          gCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGAtata                                                                                          >  1:438209/1‑140 (MQ=255)

                                          gCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGAtata                                                                                          >  1:2202905/1‑140 (MQ=255)

                                            cTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATaga                                                                                        >  1:41860/1‑140 (MQ=255)

                                                    tatcaCAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTtgc                                                                                <  1:81419/139‑1 (MQ=255)

                                                     atcaCAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTtgct                                                                               >  1:11900/1‑140 (MQ=255)

                                                          aGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGcgcg                                                                          >  1:601860/1‑140 (MQ=255)

                                                          aGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGcgcg                                                                          >  2:2151758/1‑140 (MQ=255)

                                                           gTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCgg                                                                         >  1:2145673/1‑140 (MQ=255)

                                                           gTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCgg                                                                         >  1:2132346/1‑140 (MQ=255)

                                                               aGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAAt                                                                     >  1:1562651/1‑140 (MQ=255)

                                                               aGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAAt                                                                     >  1:2277290/1‑140 (MQ=255)

                                                                 cgcTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTa                                                                   >  2:1563781/1‑140 (MQ=255)

                                                                 cgcTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTa                                                                   >  2:913967/1‑140 (MQ=255)

                                                                 cgcTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTa                                                                   >  2:1816976/1‑140 (MQ=255)

                                                                 cgcTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTa                                                                   >  1:2294985/1‑140 (MQ=255)

                                                                 cgcTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTa                                                                   >  1:938537/1‑140 (MQ=255)

                                                                    ttCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTaatg                                                                <  2:1582308/140‑3 (MQ=255)

                                                                    ttCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACg                                                                <  2:2221750/140‑1 (MQ=255)

                                                                    ttCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACg                                                                >  2:102621/1‑140 (MQ=255)

                                                                    ttCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACACTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACg                                                                >  2:1249074/1‑140 (MQ=255)

                                                                      cATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCt                                                              <  1:1924047/140‑1 (MQ=255)

                                                                        tCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTc                                                            <  2:839497/140‑1 (MQ=255)

                                                                             cGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGa                                                       <  2:2277290/140‑1 (MQ=255)

                                                                              ggTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGaa                                                      >  2:1298678/1‑140 (MQ=255)

                                                                                  gATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGa                                                  <  1:1197027/140‑1 (MQ=255)

                                                                                         aCTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGgt                                           >  1:887428/1‑140 (MQ=255)

                                                                                          cTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGgtc                                          >  2:1697415/1‑140 (MQ=255)

                                                                                            ttGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGgtcgt                                        >  1:1045967/1‑140 (MQ=255)

                                                                                            ttGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGgtcgt                                        >  1:1389040/1‑140 (MQ=255)

                                                                                             tGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGgtcgtc                                       >  2:1833175/1‑140 (MQ=255)

                                                                                             tGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGgtcgtc                                       >  2:1329150/1‑140 (MQ=255)

                                                                                             tGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGgtcgtc                                       >  2:1022146/1‑140 (MQ=255)

                                                                                              gCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCa                                      >  1:19245/1‑140 (MQ=255)

                                                                                              gCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCa                                      >  2:1228344/1‑140 (MQ=255)

                                                                                                  gATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATcgc                                  <  2:2294985/140‑1 (MQ=255)

                                                                                                   aTGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATcgcg                                 <  2:887428/140‑1 (MQ=255)

                                                                                                   aTGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATcgcg                                 <  1:1298678/140‑1 (MQ=255)

                                                                                                   aTGTAGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATcgcg                                 <  1:2151758/140‑1 (MQ=255)

                                                                                                       aGTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACgg                             <  1:2125787/140‑1 (MQ=255)

                                                                                                        gTCGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGc                            >  2:847569/1‑140 (MQ=255)

                                                                                                          cGATCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTa                          <  2:19245/140‑1 (MQ=255)

                                                                                                             tCAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACgg                       >  2:2264548/1‑140 (MQ=255)

                                                                                                              cAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGt                      >  2:944253/1‑140 (MQ=255)

                                                                                                              cAGTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGt                      >  1:1825078/1‑140 (MQ=255)

                                                                                                                gTTCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCg                    >  2:832761/1‑140 (MQ=255)

                                                                                                                 ttCCTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGc                   <  2:938537/140‑1 (MQ=255)

                                                                                                                   ccTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCa                 >  2:164476/1‑140 (MQ=255)

                                                                                                                   ccTGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCa                 >  2:1704083/1‑140 (MQ=255)

                                                                                                                     tGCACCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACg               >  2:843142/1‑140 (MQ=255)

                                                                                                                        aCCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCtt            <  2:41860/140‑1 (MQ=255)

                                                                                                                        aCCAGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCtt            <  2:1045967/140‑1 (MQ=255)

                                                                                                                           aGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCgg         >  2:136073/1‑140 (MQ=255)

                                                                                                                           aGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCgg         >  1:2014535/1‑140 (MQ=255)

                                                                                                                           aGTACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCgg         >  2:2234841/1‑140 (MQ=255)

                                                                                                                             tACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCtt            <  1:1000496/135‑1 (MQ=255)

                                                                                                                             tACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCtt            >  2:1000496/1‑135 (MQ=255)

                                                                                                                             tACCGACGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGtt       >  1:1421449/1‑140 (MQ=255)

                                                                                                                                  aCGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTgg  >  2:414366/1‑140 (MQ=255)

                                                                                                                                  aCGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTgg  >  1:2192787/1‑140 (MQ=255)

                                                                                                                                  aCGGTAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTgg  <  2:1796112/140‑1 (MQ=255)

GGCATCCGGGTATGGAGGCAAGTAAGATGCGCTTTTACCCTTGCCTCGCTTTCATCACAGTTGAGCGCTTCATCGCCCGGTAGATAATGACTTTGCCCGATGTAGTCGATCAGTTCCTGCACCAGTACCGACGGGAAACGCTCACTGTTATCCTGAATGGAACGACCGATATAGCTGATATAGAGTTTTTGCTGCGCGGAAATTAACGCTTCCAGGAACAGATAGCGGTCGTCATCGCGACGGCTACGGTCGCCACGCTTCGGTTTCTGG  >  NC_000913/2960066‑2960335

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A