Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A14 F48 I1 R1	75	141.5	4784044	99.1%	4740987	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,144,577	G→T	G188G (GGC→GGA)	hybA ←	hydrogenase 2 iron‑sulfur protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,144,577	0	G	T	100.0%	458.2 / NA	126	G188G (GGC→GGA)	hybA	hydrogenase 2 iron‑sulfur protein
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (59/67); total (59/67)

Only 100 of 130 total aligned reads displayed.

TCAGCGTCTGACGCGGATAGTGGTATTCGCTGCCAGGCTTCAGCGCCAGACGTTTTTTCGCCTCCGCCATCAGCTCTTCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCGCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACGGGTTGTTGTAGTCGTACTTCGGCACGTTGTACGGACAGGCGACCATGCAGTAACGGCAGCCGGTGCACACAT  >  NC_000913/3144441‑3144713

tCAGCGTCTGACGCGGATAGTGGTATTCGCTGCCAGGCTTCAGCGCCAGACGTTTTTTCGCCTCCGCCATCAGCTCTTCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGAcctcct                                                                                                                                       <  1:2235613/140‑1 (MQ=255)

   gCGTCTGACGCGGATAGTGGTATTCGCTGCCAGGCTTCAGCGCCAGACGTTTTTTCGCCTCCGCCATCAGCTCTTCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTa                                                                                                                                    <  1:1626188/140‑1 (MQ=255)

    cGTCTGACGCGGATAGTGGTATTCGCTGCCAGGCTTCAGCGCCAGACGTTTTTTCGCCTCCGCCATCAGCTCTTCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTAt                                                                                                                                   >  2:1588694/1‑140 (MQ=255)

    cGTCTGACGCGGATAGTGGTATTCGCTGCCAGGCTTCAGCGCCAGACGTTTTTTCGCCTCCGCCATCAGCTCTTCACGCGTACCGAAAATCACCACGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTAt                                                                                                                                   >  2:837385/1‑140 (MQ=255)

        tGACGCGGATAGTGGTATTCGCTGCCAGGCTTCAGCGCCAGACGTTTTTTCGCCTCCGCCATCAGCTCTTCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCgag                                                                                                                               <  1:349218/140‑1 (MQ=255)

         gACGCGGATAGTGGTATTCGCTGCCAGGCTTCAGCGCCAGACGTTTTTTCTCCTCCGCCATCAGCTCTTCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGGCCTCCTTTATCgaga                                                                                                                              <  2:1759731/140‑1 (MQ=255)

         gACGCGGATAGTGGTATTCGCTGCCAGGCTTCAGCGCCAGACGTTTTTTCGCCTCCGCCATCAGCTCTTCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCgaga                                                                                                                              <  2:912471/140‑1 (MQ=255)

         gACGCGGATAGTGGTATTCGCTGCCAGGCTTCAGCGCCAGACGTTTTTTCGCCTCCGCCATCAGCTCTTCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCgaga                                                                                                                              <  2:1279049/140‑1 (MQ=255)

         gACGCGGATAGTGGTATTCGCTGCCAGGCTTCAGCGCCAGACGTTTTTTCGCCTCCGCCATCAGCTCTTCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCgaga                                                                                                                              <  1:1451231/140‑1 (MQ=255)

         gACGCGGATAGTGGTATTCGCTGCCAGGCTTCAGCGCCAGACGTTTTTTCGCCTCCGCCATCAGCTCTTCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCgaga                                                                                                                              <  2:901029/140‑1 (MQ=255)

         gACGCGGATAGTGGTATTCGCTGCCAGGCTTCAGCGCCAGACGTTTTTTCGCCTCCGCCATCAGCTCTTCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCgaga                                                                                                                              <  1:1291301/140‑1 (MQ=255)

             cgGATAGTGGTATTCGCTGCCAGGCTTCAGCGCCAGACGTTTTTTCGCCTCCGCCATCAGCTCTTCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGtt                                                                                                                          <  1:238977/140‑1 (MQ=255)

                 tAGTGGTATTCGTTGCCAGGCTTCAGCGCCAGTCTTTTTTTCGCCTCCGCCATCAGCTCATCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCcac                                                                                                                      <  2:185178/140‑1 (MQ=255)

                 aaGTGGTATTCGCTGCCAGGCTTCAGCGCCAGACGTTTTTTCGCCTCCGCCATCAGCTCTTCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCcac                                                                                                                      <  2:1273890/139‑1 (MQ=255)

                  aGTGGTATTCGCTGCCAGGCTTCAGCGCCAGACGTTTTTTCGCCTCCGCCATCAGCTCTTCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCcaca                                                                                                                     <  1:2186809/140‑1 (MQ=255)

                    tGGTATTCGCTGCCAGGCTTCAGCGCCAGACGTTTTTTCGCCTCCGCCATCAGCTCTTCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACAcc                                                                                                                   >  1:1309902/1‑140 (MQ=255)

                      gTATTCGCTGCCAGGCTTCAGCGCCAGACGTTTTTTCGCCTCCGCCATCAGCTCTTCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCtt                                                                                                                 <  2:1727083/140‑1 (MQ=255)

                      gTATTCGCTGCCAGGCTTCAGCGCCAGACGTTTTTTCGCCTCCGCCATCAGCTCTTCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCtt                                                                                                                 <  1:2374225/140‑1 (MQ=255)

                      gTATTCGCTGCCAGGCTTCAGCGCCAGACGTTTTTTCGCCTCCGCCATCAGCTCTTCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCtt                                                                                                                 <  1:861202/140‑1 (MQ=255)

                         ttCGCTGCCAGGCTTCAGCGCCAGACGTTTTTTCGCCTCCGCCATCAGCTCTTCACGCGAACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCt                                                                                                              >  2:827149/1‑140 (MQ=255)

                          tCGCTGCCAGGCTTCAGCGCCAGACGTTTTTTCGCCTCCGCCATCAGCTCTTCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTg                                                                                                             >  2:1791871/1‑140 (MQ=255)

                              tGCCAGGCTTCAGCGCCAGACGTTTTTTCGCCTCCGCCATCAGCTCTTCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGttt                                                                                                         >  2:118584/1‑139 (MQ=255)

                              tGCCAGGCTTCAGCGCCAGACGTTTTTTCGCCTCCGCCATCAGCTCTTCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTg                                                                                                         >  2:386652/1‑140 (MQ=255)

                                ccAGGCTTCAGCGCCAGACGTTTTTTCGCCTCCGCCATCAGCTCTTCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGca                                                                                                       >  1:621718/1‑140 (MQ=255)

                                ccAGGCTTCAGCGCCAGACGTTTTTTCGCCTCCGCCATCAGCTCTTCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGca                                                                                                       >  2:531395/1‑140 (MQ=255)

                                ccAGGCTTCAGCGCCAGACGTTTTTTCGCCTCCGCCATCAGCTCTTCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGca                                                                                                       <  1:1868452/140‑1 (MQ=255)

                                  aGGCTTCAGCGCCAGACGTTTTTTCGCCTCCGCCATCAGCTCTTCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGcaca                                                                                                     <  1:944458/140‑1 (MQ=255)

                                     cTTCAGCGCCAGACGTTTTTTCGCCTCCGCCATCCGCTCTTCACGCGTAACAAAAATCATCGCCCCCGCCGCGCACACTTTTACGCATCCAGGTCGACCTCCTTCCTCGAGGAGTTCCCAACCTTTCCGGTTGCACAGCt                                                                                                  <  2:2247690/140‑1 (MQ=255)

                                     cTTCAGCGCCAGACGTTTTTTCGCCTCCGCCATCAGCTCTTCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCt                                                                                                  <  1:1868341/140‑1 (MQ=255)

                                     cTTCAGCGCCAGACGTTTTTTCGCCTCCGCCATCAGCTCTTCACGCGTACCGAAAATCACCGCGCCCGACGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCt                                                                                                  >  2:1775838/1‑140 (MQ=255)

                                       tCAGCGCCAGACGTTTTTTCGCCTCCGCCATCAGCTCTTCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCg                                                                                                <  1:785103/140‑1 (MQ=255)

                                       tCAGCGCCAGACGTTTTTTCGCCTCCGCCATCAGCTCTTCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCg                                                                                                <  1:1203859/140‑1 (MQ=255)

                                        cAGCGCCAGACGTTTTTTCGCCTCCGCCATCAGCTCTTCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGc                                                                                               >  2:1624955/1‑140 (MQ=255)

                                          gcgcCAGACGTTTTTTTGCCTCCGCCATCAGCTCTTCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCAc                                                                                             >  1:2305241/1‑140 (MQ=255)

                                             ccAGACGTTTTTTCGCCTCCGCCATCAGCTCTTCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTa                                                                                          <  2:1480346/140‑1 (MQ=255)

                                             ccAGACGTTTTTTCGCCTCCGCCATCAGCTCTTCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTa                                                                                          <  2:1106520/140‑1 (MQ=255)

                                              cAGACGTTTTTTCGCCTCCGCCATCAGCTCTTCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTAt                                                                                         >  1:2207872/1‑140 (MQ=255)

                                               aGACGTTTTTTCGCCTCCGCCATCAGCTCTTCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATg                                                                                        >  2:1795129/1‑140 (MQ=255)

                                               aGACGTTTTTTAGCCTCCGCCATCAGCTCTTCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATg                                                                                        >  1:1209857/1‑140 (MQ=255)

                                                gACGTTTTTTCGCCTCCGCCATCAGCTCTTCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATgt                                                                                       >  1:478305/1‑139 (MQ=255)

                                                gACGTTTTTTCGCCTCCGCCATCAGCTCTTCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGc                                                                                       >  1:2341879/1‑140 (MQ=255)

                                                gACGTTTTTTCGCCTCCGCCATCAGCTCTTCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGc                                                                                       >  2:720528/1‑140 (MQ=255)

                                                gACGTTTTTTCGCCTCCGCCATCAGCTCTTCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCCCg                                                                                                <  2:751962/131‑1 (MQ=255)

                                                 aCGTTTTTTCGCCTCCGCCATCAGCTCTTCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCa                                                                                      <  2:148334/140‑1 (MQ=255)

                                                  cGTTTTTTCGCCTCCGCCATCAGCTCTTCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAg                                                                                     <  1:386652/140‑1 (MQ=255)

                                                    ttttttCGCCTCCGCCATCAGCTCTTCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAgcg                                                                                   <  1:1483222/140‑1 (MQ=255)

                                                          cGCCTCCGCCATCAGCTCTTCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCaa                                                                             >  1:526153/1‑140 (MQ=255)

                                                           gCCTCCGCCATCAGCTCTTCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACGCCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCaaa                                                                            <  1:665008/140‑1 (MQ=255)

                                                           gCCTCCGCCATCAGCTCTTCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCaaa                                                                            <  1:1874976/140‑1 (MQ=255)

                                                              tCCGCCATCAGCTCTTCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACgg                                                                         <  1:1163819/140‑1 (MQ=255)

                                                               ccGCCATCAGCTCTTCACGCGTATCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACggg                                                                        <  2:347970/140‑1 (MQ=255)

                                                                   cATCAGCTCTTCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACGGgttgt                                                                    <  1:632361/140‑1 (MQ=255)

                                                                    aTCAGCTCTTCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACGGgttgtt                                                                   <  1:59975/140‑1 (MQ=255)

                                                                    aTCAGCTCTTCACGCGTACCGAAAATCACCGCGCCCGACGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACGGgttgtt                                                                   <  1:1775838/140‑1 (MQ=255)

                                                                          tctTCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACGGGTTGTTGTAGTc                                                             >  2:497098/1‑140 (MQ=255)

                                                                            ttCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACGGGTTGTTGTAGTCGt                                                           >  1:1141385/1‑140 (MQ=255)

                                                                                 gcgTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACGGGTTGTTGTAGTCGTACTTc                                                      >  2:56250/1‑140 (MQ=255)

                                                                                  agTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGCGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACGGGTTGTTGTAGTCGTACTTCg                                                     <  2:1515264/139‑1 (MQ=255)

                                                                                   gTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACGGGTTGTTGTAGTCGTACTTCgg                                                    >  1:1309939/1‑140 (MQ=255)

                                                                                    tACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACGGGTTGTTGTAGTCGTACTTCGGc                                                   <  1:1269738/140‑1 (MQ=255)

                                                                                    tACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACGGGTTGTTGTAGTCGTACTTCGGc                                                   <  1:1784761/140‑1 (MQ=255)

                                                                                      ccGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACGGGTTGTTGTAGTCGTACTTCGGCAc                                                 >  1:1599821/1‑140 (MQ=255)

                                                                                      ccGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACGGGTTGTTGTAGTCGTACTTCGGCAc                                                 >  1:19177/1‑140 (MQ=255)

                                                                                           aaTCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACGGGTTGTTGTAGTCGTACTTCGGCACGTTGt                                            <  1:1030033/140‑1 (MQ=255)

                                                                                               aCCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACGGGTTGTTGTAGTCGTACTTCGGCACGTTGTACgg                                        >  1:1452279/1‑140 (MQ=255)

                                                                                               aCCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACGGGTTGTTGTAGTCGTACTTCGGCACGTTGTACgg                                        >  2:1811438/1‑140 (MQ=255)

                                                                                                ccGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACGGGTTGTTGTAGTCGTACTTCGGCACGTTGTACGGa                                       >  2:144456/1‑140 (MQ=255)

                                                                                                ccGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACGGGTTGTTGTAGTCGTACTTCGGCACGTTGTACGGa                                       <  1:1791871/140‑1 (MQ=255)

                                                                                                ccGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACGGGTTGTTGTAGTCGTACTTCGGCACGTTGTACGGa                                       <  2:1689121/140‑1 (MQ=255)

                                                                                                 cgcgCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACGGGTTGTTGTAGTCGTACTTCGGCACGTTGTACGGAc                                      >  2:1370375/1‑140 (MQ=255)

                                                                                                 cgcgCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACGGGTTGTTGTAGTCGTACTTCGGCACGTTGTACGGAc                                      >  2:2315737/1‑140 (MQ=255)

                                                                                                    gcccgccGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACGGGTTGTTGTAGTCGTACTTCGGCACGTTGTACGGACAgg                                   <  1:720528/140‑1 (MQ=255)

                                                                                                    gcccgccGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTACACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACGGGTTGTTGTAGTCGTACTTCGGCACGTTGTACGGACAgg                                   >  1:849239/1‑140 (MQ=255)

                                                                                                     cccgccGGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACGGGTTGTTGTAGTCGTACTTCGGCACGTTGTACGGACAGGc                                  >  2:1187212/1‑140 (MQ=255)

                                                                                                       cgccgGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTCTCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACGGGTTGTTGTAGTCGTACTTCGGCACGTTGTACGGACAGGCGa                                <  1:1995529/140‑1 (MQ=255)

                                                                                                       cgccgGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACGGGTTGTTGTAGTCGTACTTCGGCACGTTGTACGGACAGGCGa                                <  1:88602/140‑1 (MQ=255)

                                                                                                       cgccgGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACGGGTTGTTGTAGTCGTACTTCGGCACGTTGTACGGACAGGCGa                                >  2:1995529/1‑140 (MQ=255)

                                                                                                        gccgGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACGGGTTGTTGTAGTCGTACTTCGGCACGTTGTACGGACAGGCGAc                               <  2:2305241/140‑1 (MQ=255)

                                                                                                          cgGGCACACTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACGGGTTGTTGTAGTCGTACTTCGGCACGTTGTACGGACAGGCGACCa                             <  1:1010628/140‑1 (MQ=255)

                                                                                                                 acTTCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACGGGTTGTTGTAGTCGTACTTCGGCACGTTGTACGGACAGGCGACCATGCAGTa                      <  2:678515/140‑1 (MQ=255)

                                                                                                                    tCTACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACGGGTTGTTGTAGTCGTACTTCGGCACGTTGTACGGACAGGCGACCATGCAGTAACg                   >  2:2080011/1‑140 (MQ=255)

                                                                                                                      tACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACGGGTTGTTGTAGTCGTACTTCGGCACGTTGTACGGACAGGCGACCATGCAGTAACGGc                 <  2:1103305/140‑1 (MQ=255)

                                                                                                                      tACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACGGGTTGTTGTAGTCGTACTTCGGCACGTTGTACGGACAGGCGACCATGCAGTAACGGc                 >  1:1400997/1‑140 (MQ=255)

                                                                                                                      tACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACGGGTTGTTGTAGTCGTACTTCGGCACGTTGTACGGACAGGCGACCATGCAGTAACGGc                 <  1:197272/140‑1 (MQ=255)

                                                                                                                      tACGCAGCCAGGTAGACCTCCTTTATCGAGACGTTACACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACGGGTTGTTGTAGTCGTACTTCGGCACGTTGTACGGACAGGCGACCATGCAGTAACGGc                 <  2:849239/140‑1 (MQ=255)

                                                                                                                        cGCAGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACGGGTTGTTGTAGTCGTACTTCGGCACGTTGTACGGACAGGCGACCATGCAGTAACGGCAg               <  2:2341879/140‑1 (MQ=255)

                                                                                                                           aGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACGGGTTGTTGTAGTCGTACTTCGGCACGTTGTACGGACAGGCGACCATGCAGTAACGGCAGCCg            <  1:827149/140‑1 (MQ=255)

                                                                                                                           aGCCAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACGGGTTGTTGTAGTCGTACTTCGGCACGTTGTACGGACAGGCGACCATGCAGTAACGGCAGCCg            >  1:1547966/1‑140 (MQ=255)

                                                                                                                             ccAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACGGGTTGTTGTAGTCGTACTTCGGCACGTTGTACGGACAGGCGACCATGCAGTAACGGCAGCCGGt          >  1:167752/1‑140 (MQ=255)

                                                                                                                             ccAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACGGGTTGTTGTAGTCGTACTTCGGCACGTTGTACGGACAGGCGACCATGCAGTAACGGCAGCCGGt          >  2:1290892/1‑140 (MQ=255)

                                                                                                                             ccAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACGGGTTGTTGTAGTCGTACTTCGGCACGTTGTACGGACAGGCGACCATGCAGTAACGGCAGCCGGt          >  1:1612397/1‑140 (MQ=255)

                                                                                                                             ccAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACGGGTTGTTGTAGTCGTACTTCGGCACGTTGTACGGACAGGCGACCATGCAGTAACGGCAGCCGGt          >  1:1657026/1‑140 (MQ=255)

                                                                                                                             ccAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACGGGTTGTTGTAGTCGTACTTCGGCACGTTGTACGGACAGGCGACCATGCAGTAACGGCAGCCGGt          >  2:585266/1‑140 (MQ=255)

                                                                                                                             ccAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACGGGTTGTTGTAGTCGTACTTCGGCACGTTGTACGGACAGGCGACCATGCAGTAACGGCAGCCGGt          <  1:1795129/140‑1 (MQ=255)

                                                                                                                             ccAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACGGGTTGTTGTAGTCGTACTTCGGCACGTTGTACGGACAGGCGACCATGCAGTAACGGCAGCCGGt          >  2:40949/1‑140 (MQ=255)

                                                                                                                             ccAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACGGGTTGTTGTAGTCGTACTTCGGCACGTTGTACGGACAGGCGACCATGCAGTAACGGCAGCCGGt          >  2:1158428/1‑140 (MQ=255)

                                                                                                                              cAGGTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACGGGTTGTTGTAGTCGTACTTCGGCACGTTGTACGGACAGGCGACCATGCAGTAACGGCAGCCGGTg         <  1:819887/140‑1 (MQ=255)

                                                                                                                                ggTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACGGGTTGTTGTAGTCGTACTTCGGCACGTTGTACGGACAGGCGACCATGCAGTAACGGCAGCCGGTGca       <  2:1209857/140‑1 (MQ=255)

                                                                                                                                ggTAGACCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACGGGTTGTTGTAGTCGTACTTCGGCACGTTGTACGGACAGGCGACCATGCAGTAACGGCAGCCGGTGca       >  1:332683/1‑140 (MQ=255)

                                                                                                                                     aCCTCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACGGGTTGTTGTAGTCGTACTTCGGCACGTTGTACGGACAGGCGACCATGCAGTAACGGCAGCCGGTGCACACAt  >  2:646334/1‑140 (MQ=255)

TCAGCGTCTGACGCGGATAGTGGTATTCGCTGCCAGGCTTCAGCGCCAGACGTTTTTTCGCCTCCGCCATCAGCTCTTCACGCGTACCGAAAATCACCGCGCCCGCCGGGCACACTTCTACGCAGCCAGGTAGACCGCCTTTATCGAGACGTTCCACACCTTTCTGGTTGCACAGCTCGCACTTATGCAGCGCACCAAACGGGTTGTTGTAGTCGTACTTCGGCACGTTGTACGGACAGGCGACCATGCAGTAACGGCAGCCGGTGCACACAT  >  NC_000913/3144441‑3144713

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A