Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A14 F48 I1 R1 75 141.5 4784044 99.1% 4740987 139.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,207,015 C→A L185I (CTC→ATC)  ttdA → L(+)‑tartrate dehydratase subunit alpha

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,207,0150CA100.0% 312.0 / NA 89L185I (CTC→ATC) ttdAL(+)‑tartrate dehydratase subunit alpha
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (43/46);  total (43/46)

CCCCGACAATGACGATGCGGAAATCGAAGTTTACATGGCAGGCGGCGGCTGCACGCTACCTGGCCGCTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCCTCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAACCGCCGCCGTACTCTCGCGTAAAGCCATTTTGCGCCCGATTGGCAGCCGCCATCCCAATCCAAAAGCGGCAGAACT  >  NC_000913/3206879‑3207151
                                                                                                                                        |                                                                                                                                        
ccccGACAATGACGATGCGGAAATCGAAGTTTACATGGCAGGCGGCGGCTGCACGCTACCTGGCCGCTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCg                                                                                                                                       <  2:2042369/140‑1 (MQ=255)
  ccGACAATGACGATGCGGAAATCGAAGTTTACATGGCAGGCGGCGGCTGCACGCTACCTGGCCGCTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGcc                                                                                                                                     >  1:1514170/1‑140 (MQ=255)
          gACGATGCGGAAATCGAAGTTTACATGGCAGGCGGCGGCTGCACGCTACCTGGCCGCTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGc                                                                                                                             <  1:517895/140‑1 (MQ=255)
          gACGATGCGGAAATCGAAGTTTACATGGCAGGCGGCGGCTGCACGCTACCTGGCCGCTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGc                                                                                                                             <  1:1239778/140‑1 (MQ=255)
          gACGATGCGGAAATCGAAGTTTACATGGCAGGCGGCGGCTGCACGCTACCTGGCCGCTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGc                                                                                                                             <  2:239715/140‑1 (MQ=255)
             gATGCGGAAATCGAAGTTTACATGGCAGGCGGCGGCTTCACGCTACCTGGCCGCTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTg                                                                                                                          <  1:627661/140‑1 (MQ=255)
             gATGCGGAAATCGAAGTTTACATGGCAGGCGGCGGCTGCACGCTACCTGGCCGCTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTg                                                                                                                          <  2:57459/140‑1 (MQ=255)
              aTGCGGAAATCGAAGTTTACATGGCAGGCGGCGGCTGCACGCTACCTGGCCGCTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGt                                                                                                                         >  1:2019603/1‑140 (MQ=255)
              aTGCGGAAATCGAAGTTTACATGGCAGGCGGCGGCTGCACGCTACCTGGCCGCTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGt                                                                                                                         >  1:2267388/1‑140 (MQ=255)
               tGCGGAAATCGAAGTTTACATGGCAGGCGGCGGCTGCACGCTACCTGGCCGCTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTc                                                                                                                        >  1:2382634/1‑140 (MQ=255)
                gCGGAAATCGAAGTTTACATGGCAGGCGGCGGCTGCACGCTACCTGGCCGCTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTcc                                                                                                                       >  1:1399265/1‑140 (MQ=255)
                 cGGAAATCGAAGTTTACATGGCAGGCGGCGGCTGCACGCTACCTGGCCGCTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCa                                                                                                                      >  1:1238305/1‑140 (MQ=255)
                 cGGAAATCGAAGTTTACATGGCAGGCGGCGGCTGCACGCTACCTGGCCGCTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCa                                                                                                                      >  1:1939484/1‑140 (MQ=255)
                 cGGAAATCGAAGTTTACATGGCAGGCGGCGGCTGCACGCTACCTGGCCGCTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCa                                                                                                                      <  1:1518918/140‑1 (MQ=255)
                  ggAAATCGAAGTTTACATGGCAGGCGGCGGCTGTACGCTACCTGGCCGCTCGAGAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCACCAACATCGCCGTAAACGCCCGTCCAc                                                                                                                     <  2:1598043/140‑1 (MQ=255)
                  ggAAATCGAAGTTTACATGGCAGGCGGCGGCTGCACGCTACCTGGCCGCTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCAc                                                                                                                     <  1:158461/140‑1 (MQ=255)
                  ggAAATCGAAGTTTACATGGCAGGCGGCGGCTGCACGCTACCTGGCCGCTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCAc                                                                                                                     <  1:477269/140‑1 (MQ=255)
                  ggAAATCGAAGTTTACATGGCAGGCGGCGGCTGCACGCTACCTGGCCGCTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCAc                                                                                                                     <  1:518652/140‑1 (MQ=255)
                  ggAAATCGAAGTTTACATGGCAGGCGGCGGCTGCACGCTACCTGGCCGCTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCAc                                                                                                                     <  1:650355/140‑1 (MQ=255)
                  ggAAATCGAAGTTTACATGGCAGGCGGCGGCTGCACGCTACCTGGCCGCTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCAc                                                                                                                     <  1:333263/140‑1 (MQ=255)
                  ggAAATCGAAGTTTACATGGCAGGCGGCGGCTGCACGCTACCTGGCCGCTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCAc                                                                                                                     <  2:302664/140‑1 (MQ=255)
                  ggAAATCGAAGTTTACATGGCAGGCGGCGGCTGCACGCTACCTGGCCGCTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCAc                                                                                                                     <  1:1568659/140‑1 (MQ=255)
                  ggAAATCGAAGTTTACATGGCAGGCGGCGGCTGCACGCTACCTGGCCGCTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCAc                                                                                                                     <  1:1528357/140‑1 (MQ=255)
                          aaGTTTACATGGCAGGCGGCGGCTGCACGCTACCTGGCCGCTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACtg                                                                                                             <  1:405110/140‑1 (MQ=255)
                           aGTTTACATGGCAGGCGGCGGCTGCACGCTACCTGGCCGCTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACtgg                                                                                                            <  2:1431642/140‑1 (MQ=255)
                           aGTTTACATGGCAGGCGGCGGCTGCACGCTACCTGGCCGCTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACtgg                                                                                                            <  1:2012159/140‑1 (MQ=255)
                            gTTTACATGGCAGGCGGCGGCTGCACGCTACCTGGCCGCTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACtggt                                                                                                           <  2:1306948/140‑1 (MQ=255)
                                     gCAGGCGGCGGCTGCACGCTACCTGGCCGCTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGgtgggcgtggg                                                                                                  <  2:686514/140‑1 (MQ=255)
                                       aGGCGGCGGCTGCACGCTACCTGGCCGCTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCa                                                                                                >  1:2066443/1‑140 (MQ=255)
                                       aGGCGGCGGCTGCACGCTACCTGGCCGCTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCa                                                                                                >  1:409676/1‑140 (MQ=255)
                                       aGGCGGCGGCTGCACGCTACCTGGCCGCTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCa                                                                                                >  2:142301/1‑140 (MQ=255)
                                         gcggcggcTGCACGCTACCTGGCCGCTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATc                                                                                              >  2:699170/1‑140 (MQ=255)
                                         gcggcggcTGCACGCTACCTGGCCGCTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGCGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCAGTACTGGTGGGCGTGGGCAtt                                                                                              >  2:1428269/1‑139 (MQ=255)
                                           ggcggcTGCACGCTACCTGGCCGCTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTCCTGGTGGGCGTGGGCATCGc                                                                                            <  2:2145825/140‑1 (MQ=255)
                                           ggcggcTGCACGCTACCTGGCCGCTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGc                                                                                            >  2:2346883/1‑140 (MQ=255)
                                            gcggcTGCACGCTACCTGGCCGCTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGcc                                                                                           >  2:437380/1‑140 (MQ=255)
                                             cggcTGCACGCTACCTGGCCGCTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCa                                                                                          >  2:2147087/1‑140 (MQ=255)
                                               gcTGCACGCTACCTGGCCGCTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCAcc                                                                                        <  1:513245/140‑1 (MQ=255)
                                                     cGCTACCTGGCCGCTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTg                                                                                  <  1:1215063/140‑1 (MQ=255)
                                                           cTGGCCGCTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAAcc                                                                            >  2:26673/1‑140 (MQ=255)
                                                            tGGCCGCTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAAccg                                                                           <  2:18160/140‑1 (MQ=255)
                                                             ggCCGCTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAAccgc                                                                          <  1:2346883/140‑1 (MQ=255)
                                                               ccGCTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAAccgccg                                                                        <  1:2035397/140‑1 (MQ=255)
                                                               ccGCTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAAccgccg                                                                        <  1:1934792/140‑1 (MQ=255)
                                                                cGCTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCCCCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAAccgccgc                                                                       <  1:586597/140‑1 (MQ=255)
                                                                cGCTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAAccgccgc                                                                       >  2:9334/1‑140 (MQ=255)
                                                                  cTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAAccgccgccg                                                                     >  2:2070533/1‑140 (MQ=255)
                                                                  cTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAAccgccgccg                                                                     >  2:1981879/1‑140 (MQ=255)
                                                                  cTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAAccgccgccg                                                                     >  2:700535/1‑140 (MQ=255)
                                                                  cTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAAccgccgccg                                                                     >  1:476555/1‑140 (MQ=255)
                                                                  cTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAAccgccgccg                                                                     >  2:2202156/1‑140 (MQ=255)
                                                                  cTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACC‑GTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAACCGCCGCCGt                                                                    >  2:337175/1‑140 (MQ=255)
                                                                  cTCGAAAGAGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAAccgccgccg                                                                     >  2:458995/1‑140 (MQ=255)
                                                                    cGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAACCGCCGCCGTa                                                                   >  2:1099943/1‑140 (MQ=255)
                                                                    cGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAACCGCCGCCGTa                                                                   >  2:2169326/1‑140 (MQ=255)
                                                                        aGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAACCGCCGCCGTActct                                                               <  1:437380/140‑1 (MQ=255)
                                                                            ttAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAACCGCCGCCGTACTCTcgcg                                                           <  1:1099943/140‑1 (MQ=255)
                                                                              aaTGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAACCGCCGCCGTACTCTCGCGTa                                                         <  1:1704827/140‑1 (MQ=255)
                                                                                    gTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAACCGCCGCCGTACTCTCGCGTAAAGCCa                                                   >  2:122508/1‑140 (MQ=255)
                                                                                    gTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAACCGCCGCCGTACTCTCGCGTAAAGCCa                                                   >  1:1861894/1‑140 (MQ=255)
                                                                                     tCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAACCGCCGCCGTACTCTCGCGTAAAGCCAt                                                  >  1:734809/1‑140 (MQ=255)
                                                                                           ggCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAACCGCCGCCGTACTCTCGCGTAAAGCCATTTTgcg                                            >  1:1316126/1‑140 (MQ=255)
                                                                                                cGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAACCGCCGCCGTACTCTCGCGTAAAGCCATTTTGCGCCCgt                                       >  2:78676/1‑139 (MQ=255)
                                                                                                cGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAACCGCCGCCGTACTCTCGCGTAAAGCCATTTTGCGCCCGa                                       >  1:2236867/1‑140 (MQ=255)
                                                                                                agAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAACCGCCGCCGTACTCTCGCGTAAAGCCATTTTGCGCCCGa                                       <  2:95610/139‑1 (MQ=255)
                                                                                                    ggCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACC‑GTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAACCGCCGCCGTACTCTCGCGTAAAGCCATTTTGCGCCCGATTGGc                                  <  1:337175/140‑1 (MQ=255)
                                                                                                      ggtggtgAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAACCGCCGCCGTACTCTCGCGTAAAGCCATTTTGCGCCCGATTGGCa                                 <  2:605598/139‑1 (MQ=255)
                                                                                                      cGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAACCGCCGCCGTACTCTCGCGTAAAGCCATTTTGCGCCCGATTGGCa                                 >  1:1905715/1‑140 (MQ=255)
                                                                                                      cGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAACCGCCGCCGTACTCTCGCGTAAAGCCATTTTGCGCCCGATTGGCa                                 >  2:1933851/1‑140 (MQ=255)
                                                                                                      cGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAACCGCCGCCGTACTCTCGCGTAAAGCCATTTTGCGCCCGATTGGCa                                 <  2:2151768/140‑1 (MQ=255)
                                                                                                      cGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAACCGCCGCCGTACTCTCGCGTAAAGCCATTTTGCGCCCGATTGGCa                                 >  1:70687/1‑140 (MQ=255)
                                                                                                      cGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAACCGCCGCCGTACTCTCGCGTAAAGCCATTTTGCGCCCGATTGGCa                                 <  2:575966/140‑1 (MQ=255)
                                                                                                      cGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAACCGCCGCCGTACTCTCGCGTAAAGCCATTTTGCGCCCGATTGGCa                                 >  2:843736/1‑140 (MQ=255)
                                                                                                      cGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAACCGCCGCCGTACTCTCGCGTAAAGCCATTTTGCGCCCGATTGGCa                                 <  2:2382634/140‑1 (MQ=255)
                                                                                                      cGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAACCGCCGCCGTACTCTCGCGTAAAGCCATTTTGCGCCCGATTGGCa                                 >  1:2100591/1‑140 (MQ=255)
                                                                                                      cGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAACCGCCGCCGTACTCTCGCGTAAAGCCATTTTGCGCCCGATTGGCa                                 <  1:2237893/140‑1 (MQ=255)
                                                                                                      cGTGGTGAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAACCGCCGCCGTACTCTCGCGTAAAGCCATTTTGCGCCCGATTGGCa                                 >  2:1409383/1‑140 (MQ=255)
                                                                                                       gtggtgAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAACCGCCGCCGTACTCTCGCGTAAAGCCATTTTGCGCCCGATTGGCAg                                >  2:1926233/1‑140 (MQ=255)
                                                                                                          gtgAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAACCGCCGCCGTACTCTCGCGTAAAGCCATTTTGCGCCCGATTGGCAgccg                             >  2:1785904/1‑140 (MQ=255)
                                                                                                           tgAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCCCCTCGGTGGAAACCGCCGCCGTACTCTCGCGTAAAGCCATTTTGCGCCCGATTGGCAgccgc                            <  2:1959884/140‑1 (MQ=255)
                                                                                                           ggAAATTCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAACCGCCGCCGTACTCTCGCGTAAAGCCATTTTGCGCCCGATTGGCAgccgc                            <  1:700535/139‑1 (MQ=255)
                                                                                                                ttCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAACCGCCGCCGTACTCTCGCGTAAAGCCATTTTGCGCCCGATTGGCAGCCGCCATcc                       <  2:1866675/140‑1 (MQ=255)
                                                                                                                ttCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAACCGCCGCCGTACTCTCGCGTAAAGCCATTTTGCGCCCGATTGGCAGCCGCCATcc                       <  2:1203331/140‑1 (MQ=255)
                                                                                                                 tCGTCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAACCGCCGCCGTACTCTCGCGTAAAGCCATTTTGCGCCCGATTGGCAGCCGCCATccc                      <  1:699170/140‑1 (MQ=255)
                                                                                                                    tCTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAACCGCCGCCGTACTCTCGCGTAAAGCCATTTTGCGCCCGATTGGCAGCCGCCATCCCAAt                   >  2:409934/1‑140 (MQ=255)
                                                                                                                     cTTCGAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAACCGCCGCCGTACTCTCGCGTAAAGCCATTTTGCGCCCGATTGGCAGCCGCCATCCCAATc                  >  1:298563/1‑140 (MQ=255)
                                                                                                                         gAAAATATCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAACCGCCGCCGTACTCTCGCGTAAAGCCATTTTGCGCCCGATTGGCAGCCGCCATCCCAATCCaaa              <  1:843736/140‑1 (MQ=255)
                                                                                                                              tatCTCCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAACCGCCGCCGTACTCTCGCGTAAAGCCATTTTGCGCCCGATTGGCAGCCGCCATCCCAATCCAAAAGCgg         <  1:1933851/140‑1 (MQ=255)
                                                                                                                                 ctcCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAACCGCCGCCGTACTCTCGCGTAAAGCCATTTTGCGCCCGATTGGCAGCCGCCATCCCAATCCAAAAGCGGCAg      <  1:292327/140‑1 (MQ=255)
                                                                                                                                 ctcCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAACCGCCGCCGTACTCTCGCGTAAAGCCATTTTGCGCCCGATTGGCAGCCGCCATCCCAATCCAAAAGCGGCAg      >  2:2352941/1‑140 (MQ=255)
                                                                                                                                 ctcCACCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAACCGCCGCCGTACTCTCGCGTAAAGCCATTTTGCGCCCGATTGGCAGCCGCCATCCCAATCCAAAAGCGGCAg      <  2:1238305/140‑1 (MQ=255)
                                                                                                                                   ccaccaTCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAACCGCCGCCGTACTCTCGCGTAAAGCCATTTTGCGCCCGATTGGCAGCCGCCATCCCAATCCAAAAGCGGCAGaa    <  1:9334/140‑1 (MQ=255)
                                                                                                                                     aCCATCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAACCGCCGCCGTACTCTCGCGTAAAGCCATTTTGCGCCCGATTGGCAGCCGCCATCCCAATCCAAAAGCGGCAGAACt  >  1:1851901/1‑140 (MQ=255)
                                                                                                                                        |                                                                                                                                        
CCCCGACAATGACGATGCGGAAATCGAAGTTTACATGGCAGGCGGCGGCTGCACGCTACCTGGCCGCTCGAAAGTGTTAATGCCGTCAGAAGGCTACGAAGGCGTGGTGAAATTCGTCTTCGAAAATATCTCCACCCTCGCCGTAAACGCCTGTCCACCGGTACTGGTGGGCGTGGGCATCGCCACCTCGGTGGAAACCGCCGCCGTACTCTCGCGTAAAGCCATTTTGCGCCCGATTGGCAGCCGCCATCCCAATCCAAAAGCGGCAGAACT  >  NC_000913/3206879‑3207151

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A