Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A19 F48 I1 R1 83 81.6 2760494 99.1% 2735649 139.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,211,299 G→A G65S (GGC→AGC)  dnaG → DNA primase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,211,2990GA98.6% 250.8 / ‑4.5 73G65S (GGC→AGC) dnaGDNA primase
Reads supporting (aligned to +/- strand):  ref base G (0/1);  new base A (40/32);  total (40/33)
Fisher's exact test for biased strand distribution p-value = 4.52e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01

GTCGATCTGATCGATGCCCGTGTGAAGCTGAAAAAGCAGGGCAAGAATTTCCACGCGTGTTGTCCATTCCACAACGAGAAAACCCCGTCCTTCACCGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTGGCGCGCACGGCAACGCGATCGACTTCCTGATGAACTACGACAAGCTCGAGTTCGTCGAAACGGTCGAAGAGCTGGCAGCAATGCACAATCTTGAAGTGCCATTTGAAGCAGGCAGCGGCCCCAGCCAGATCGAGCG  >  NC_000913/3211164‑3211435
                                                                                                                                       |                                                                                                                                        
gtcgATCTGATCGATGCCCGTGTGAAGCTGAAAAAGCAGGGCAAGAATTTCCACGCGTGTTGTCCATTCCACAACGAGAAAACCCCGTCCTTCACCGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAgcgc                                                                                                                                      >  1:1164501/1‑140 (MQ=255)
 tcgATCTGATCGATGCCCGTGTGAAGCTGAAAAAGCAGGGCAAGAATTTCCACGCGTGTTGTCCATTCCACAACGAGAAAACCCCGTCCTTCACCGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAgcgcg                                                                                                                                     >  2:1137652/1‑140 (MQ=255)
     tCTGATCGATGCCCGTGTGAAGCTGAAAAAGCAGGGCAAGAATTTCCACGCGTGTTGTCCATTCCACAACGAGAAAACCCCGTCCTTCACCGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACg                                                                                                                                 >  1:452508/1‑140 (MQ=255)
        gATCGATGCCCGTGTGAAGCTGAAAAAGCAGGGCAAGAATTTCCACGCGTGTTGTCCATTCCACAACGAGAAAACCCCGTCCTTCACCGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCa                                                                                                                              <  1:576126/140‑1 (MQ=255)
         aTCGATGCCCGTGTGAAGCTGAAAAAGCAGGGCAAGAATTTCCACGCGTGTTGTCCATTCCACAACGAGAAAACCCCGTCCTTCACCGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCaa                                                                                                                             >  1:429318/1‑140 (MQ=255)
            gATGCCCGTGTGAAGCTGAAAAAGCAGGGCAAGAATTTCCACGCGTGTTGTCCATTCCACAACGAGAAAACCCCGTCCTTCACCGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAAcgc                                                                                                                          <  2:815527/140‑1 (MQ=255)
              tGCCCGTGTGAAGCTGAAAAAGCAGGGCAAGAATTTCCACGCGTGTTGTCCATTCCACAACGAGAAAACCCCGTCCTTCACCGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGa                                                                                                                        >  1:1125422/1‑140 (MQ=255)
              tGCCCGTGTGAAGCTGAAAAAGCAGGGCAAGAATTTCCACGCGTGTTGTCCATTCCACAACGAGAAAACCCCGTCCTTCACCGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGa                                                                                                                        >  1:622724/1‑140 (MQ=255)
                  cGTGTGAAGCTGAAAAAGCAGGGCAAGAATTTCCACGCGTGTTGTCCATTCCACAACGAGAAAACCCCGTCCTTCACCGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGa                                                                                                                    <  2:17943/140‑1 (MQ=255)
                   gtgtGAAGCTGAAAAAGCAGGGCAAGAATTTCCACGCGTGTTGTCCATTCCACAACGAGAAAACCCCGTCCTTCACCGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGAc                                                                                                                   >  1:478867/1‑140 (MQ=255)
                   gtgtGAAGCTGAAAAAGCAGGGCAAGAATTTCCACGCGTGTTGTCCATTCCACAACGAGAAAACCCCGTCCTTCACCGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGAc                                                                                                                   >  2:293388/1‑140 (MQ=255)
                    tgtgATGCTGAAAAAGCAGGGCAAGAATTTCCACGCGTGTTGTCCATTCCACAACGAGAAAACCCCGTCCTTCACCGTTAACGGTGAGAAACAGTTTTACCAATGCTTTGGATGTAGCGCGCACGGCAAAGCGATCGACt                                                                                                                  >  2:467700/1‑140 (MQ=255)
                    tgtgAAGCTGAAAAAGCAGGGCAAGAATTTCCACGCGTGTTGTCCATTCCACAACGAGAAAACCCCGTCCTTCACCGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGACt                                                                                                                  <  2:508992/140‑1 (MQ=255)
                    tgtgAAGCTGAAAAAGCAGGGCAAGAATTTCCACGCGTGTTGTCCATTCCACAACGAGAAAACCCCGTCCTTCACCGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGACt                                                                                                                  <  1:293388/140‑1 (MQ=255)
                    tgtgAAGCTGAAAAAGCAGGGCAAGAATTTCCACGCGTGTTGTCCATTCCACAACGAGAAAACCCCGTCCTTCACCGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGACt                                                                                                                  >  1:1023723/1‑140 (MQ=255)
                    tgtgAAGCTGAAAAAGCAGGGCAAGAATTTCCACGCGTGTTGTCCATTCCACAACGAGAAAACCCCGTCCTTCACCGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGACt                                                                                                                  >  2:447759/1‑140 (MQ=255)
                    tgtgAAGCTGAAAAAGCAGGGCAAGAATTTCCACGCGTGTTGTCCATTCCACAACGAGAAAACCCCGTCCTTCACCGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGACt                                                                                                                  <  1:1137652/140‑1 (MQ=255)
                    tgtgAAGCTGAAAAAGCAGGGCAAGAATTTCCACGCGTGTTGTCCATTCCACAACGAGAAAACCCCGTCCTTCACCGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATAGACt                                                                                                                  <  2:366318/140‑1 (MQ=255)
                          gCTGAAAAAGCAGGGCAAGAATTTCCACGCGTGTTGTCCATTCCACAACGAGAAAACCCCGTCCTTCACCGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGACTTCCtga                                                                                                            <  1:484562/140‑1 (MQ=255)
                           cTGAAAAAGCAGGGCAAGAATTTCCACGCGTGTTGTCCATTCCACAACGAGAAAACCCCGTCCTTCACCGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGACTTCCtgat                                                                                                           >  2:626912/1‑140 (MQ=255)
                           cTGAAAAAGCAGGGCAAGAATTTCCACGCGTGTTGTCCATTCCACAACGAGAAAACCCCGTCCTTCACCGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGACTTCCtgat                                                                                                           >  1:308250/1‑140 (MQ=255)
                              aaaaaGCAGGGCAAGAATTTCCACGCGTGTTGTCCATTCCACAACGAGAAAACCCCGTCCTTCACCGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGACTTCCTGATGaa                                                                                                        >  2:990731/1‑140 (MQ=255)
                                   gCAGGGCAAGAATTTCCACGCGTGTTGTCCATTCCACAACGAGAAAACCCCGTCCTTCACCGTTAACGGTGAGAAACAGTTTTGCCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGACTTCCTGATGAACTACg                                                                                                   <  2:189067/140‑1 (MQ=255)
                                     aGGGCAAGAATTTCCACGCGTGTTGTCCATTCCACAACGAGAAAACCCCGTCCTTCACCGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGACTTCCTGATGAACTACGAc                                                                                                 <  2:1164501/140‑1 (MQ=255)
                                     aGGGCAAGAATTTCCACGCGTGTTGTCCATTCCACAACGAGAAAACCCCGTCCTTCACCGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGACTTCCTGATGAACTACGAc                                                                                                 >  1:248810/1‑140 (MQ=255)
                                     aGGGCAAGAATTTCCACGCGTGTTGTCCATTCCACAACGAGAAAACCCCGTCCTTCACCGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGACTTCCTGATGAACTACGAc                                                                                                 >  1:116643/1‑140 (MQ=255)
                                       ggCAAGGATTTCCACGCGTGTTGTCCATTCCACAACGAGAAAACCCCGTCCTTCACCGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGACTTCCTGATGAACTACGACaa                                                                                               >  2:1330369/1‑140 (MQ=255)
                                        gCAAGAATTTCCACGCGTGTTGTCCATTCCACAACGAGAAAACCCCGTCCTTCACCGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGACTTCCTGATGAACTACGACAAg                                                                                              >  2:458263/1‑140 (MQ=255)
                                              aTTTCCACGCGTGTTGTCCATTCCACAACGAGAAAACCCCGTCCTTCACCGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGACTTCCTGATGAACTACGACAAGCTCGAg                                                                                        <  2:100149/140‑1 (MQ=255)
                                                 tCCACGCGTGTTGTCCATTCCACAACGAGAAAACCCCGTCCTTCACCGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGACTTCCTGATGAACTACGACAAGCTCGAGTtc                                                                                     >  1:544160/1‑140 (MQ=255)
                                                 tCCACGCGTGTTGTCCATTCCACAACGAGAAAACCCCGTCCTTCACCGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGACTTCCTGATGAACTACGACAAGCTCGAGTtc                                                                                     >  2:219215/1‑140 (MQ=255)
                                                      gcgTGTTGTCCATACCACAACGAGAAAACCCCGTCCTTCACCGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGACTTCCTGATGAACTACGACAAGCTCGAGTTCGTCGa                                                                                <  1:361905/140‑1 (MQ=255)
                                                       cgTGTTGTCCATTCCACAACGAGAAAACCCCGTCCTTCACCGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGGTGTAGCGCGCACGGCAACGCGATCGACTTCCTGATGAACTACGACAAGCTCGAGTTCGTCGaa                                                                               >  2:699619/1‑140 (MQ=255)
                                                        gtgtTGTCCATTCCACAACGAGAAAACCCCGTCCTTCACCGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGACTTCCTGATGAACTACGACAAGCTCGAGTTCGTCGaaa                                                                              <  2:618384/140‑1 (MQ=255)
                                                                cATTCCACAACGAGAAAACCCCGTCCTTCACCGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGACTTCCTGATGAACTACGACAAGCTCGAGTTCGTCGAAACGGTCGaa                                                                      >  2:450887/1‑140 (MQ=255)
                                                                 aTTCCACAACGAGAAAACCCCGTCCTTCACCGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAACTCGATCGACTTCCTGATGAACTACGACAAGCTCGAGTTCGTCGAAACGGTCGAag                                                                     >  2:523096/1‑140 (MQ=255)
                                                                   tCCACAACGAGAAAACCCCGTCCTTCACCGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGACTTCCTGATGAACTACGACAAGCTCGAGTTCGTCGAAACGGTCGAagag                                                                   >  2:1090514/1‑140 (MQ=255)
                                                                        aaCGAGAAAACCCCGTCCTTCACCGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGACTTCCTGATGAACTACGACAAGCTCAAGTTCGTCGAAACGGTCGAAGAGCTGgc                                                              >  2:1292145/1‑140 (MQ=255)
                                                                          cGAGAAAACCCCGTCCTTCACCGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGACTTCCTGATGAACTACGACAAGCTCGAGTTCGTCGAAACGGTCGAAGAGCTGgcag                                                            <  1:350707/140‑1 (MQ=255)
                                                                           gagaAAACCCCGTCCTTCACCGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTGGCGCGCACGGCAACGCGATCGACTTCCTGATGAACTACGACAAGCTCGAGTTCGTCGAAACGGTCGAAGAGCTGgcagc                                                           <  1:1183185/140‑1 (MQ=255)
                                                                            agaAAACCCCGTCCTTCACCGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGACTTCCTGATGAACTACGACAAGCTCGAGTTCGTCGAAACGGTCGAAGAGCTGgcagca                                                          <  2:534759/140‑1 (MQ=255)
                                                                            agaAAACCCCGTCCTTCACCGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGACTTCCTGATGAACTACGACAAGCTCGAGTTCGTCGAAACGGTCGAAGAGCTGgcagca                                                          <  1:413048/140‑1 (MQ=255)
                                                                             gaAAACCCCGTCCTTCACCGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGACTTCCTGATGAACTACGACAAGCTCGAGTTCGTCGAAACGGTCGAAGAGCTGGCAGCaa                                                         >  1:990185/1‑140 (MQ=255)
                                                                                 aCCCCGTCCTTCACCGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCAGGGCAACGCGATCGACTTCCTGATGAACTACGACAAGCTCGAGTTCGTCGAAACGGTCGAAGAGCTGGCAGCAATGca                                                     <  2:622724/140‑1 (MQ=255)
                                                                                 aCCCCGTCCTTCACCGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGACTTCCTGATGAACTACGACAAGCTCGAGTTCGTCGAAACGGTCGAAGAGCTGGCAGCAATGca                                                     <  1:1330369/140‑1 (MQ=255)
                                                                                 aCCCCGTCCTTCACCGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGACTTCCTGATGAACTACGACAAGCTCGAGTTCGTCGAAACGGTCGAAGAGCTGGCAGCAATGca                                                     <  2:308250/140‑1 (MQ=255)
                                                                                     cGTCCTTCACCGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGACTTCCTGATGAACTACGACAAGCTCGAGTTCGTCGAAACGGTCGAAGAGCTGGCAGCAATGCACAAt                                                 >  1:908226/1‑140 (MQ=255)
                                                                                        ccTTCACCGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGACTTCCTGATGAACTACGACAAGCTCGAGTTCGTCGAAACGGTCGAAGAGCTGGCAGCAATGCACAATCtt                                              >  2:292324/1‑140 (MQ=255)
                                                                                           tCACCGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGACTTCCTGATGAACTACGACAAGCTCGAGTTCGTCGAAACGGTCGAAGAGCTGGCAGCAATGCACAATCTTGaa                                           <  1:447759/140‑1 (MQ=255)
                                                                                           tCACCGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGACTTCCTGATGAACTACGACAAGCTCGAGTTCGTCGAAACGGTCGAAGAGCTGGCAGCAATGCACAATCTTGaa                                           <  1:228336/140‑1 (MQ=255)
                                                                                            cACCGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGACTTCCTGATGAACTACGACAAGCTCGAGTTCGTCGAAACGGTCGAAGAGCTGGCAGCAATGCACAATCTTGAAg                                          >  2:1291838/1‑140 (MQ=255)
                                                                                            cACCGTTAACGGAGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGAGCGACTTCCTGATGAACTACGACAAGCTCGAGTTCGTCGAAACGGTCGAAGAGCTGGCAGCAATGCACAATCTTGAAg                                          >  2:656103/1‑140 (MQ=255)
                                                                                              ccGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGACTTCCTGATGAACTACGACAAGCTCGAGTTCGTCGAAACGGTCGAAGAGCTGGCAGCAATGCACAATCTTGAAGTg                                        <  1:219215/140‑1 (MQ=255)
                                                                                              ccGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGACTTCCTGATGAACTACGACAAGCTCGAGTTCGTCGAAACGGTCGAAGAGCTGGCAGCAATGCACAATCTTGAAGTg                                        <  1:1301957/140‑1 (MQ=255)
                                                                                                 ttAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGTCTTCCTGATGAACTGCGACAAGCTCGAGTTCGTCGAAACGGTCGAAGAGCTGGCAGCAATGCACAATCTTGAAGTGCCa                                     <  1:467700/140‑1 (MQ=255)
                                                                                                 ttAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGACTTCCTGATGAACTACGACAAGCTCGAGTTCGTCGAAACGGTCGAAGAGCTGGCAGCAATGCACAATCTTGAAGTGCCa                                     >  2:76919/1‑140 (MQ=255)
                                                                                                  tAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGACTTCCTGATGAACTACGACAAGCTCGAGTTCGTCGAAACGGTCGAAGAGCTGGCAGCAATGCACAATCTTGAAGTGCCAt                                    >  1:934321/1‑140 (MQ=255)
                                                                                                  tAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGACTTCCTGATGAACTACGACAAGCTCGAGTTCGTCGAAACGGTCGAAGAGCTGGCAGCAATGCACAATCTTGAAGTGCCAt                                    <  1:458263/140‑1 (MQ=255)
                                                                                                   aaCGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGACTTCCTGATGAACTACGACAAGCTCGAGTTCGTCGAAACGGTCGAAGAGCTGGCAGCAATGCACAATCTTGAAGTGCCAtt                                   >  1:1304131/1‑140 (MQ=255)
                                                                                                    aCGGTGAGAAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGACTTCCTGATGAACTACGACAAGCTCGAGTTCGTCGAAACGGTCGAAGAGCTGGCAGCAATGCACAATCTTGAAGTGCCAttt                                  >  1:1092085/1‑140 (MQ=255)
                                                                                                         gagaAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGACTTCCTGATGAACTACGACAAGCTCGAGTTCGTCGAAACGGTCGAAGAGCTGGCAGCAATGCACAATCTTGAAGTGCCATTTGAAgc                             >  2:149888/1‑140 (MQ=255)
                                                                                                         gagaAACAGTTATACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGACTTCCTGATGAACTACGACAAGCTCGAGTTCGTCGAAACGGTCGAAGAGCTGGCAGCAATGCACAATCTTGAAGTGCCATTTGAAgc                             >  2:1085219/1‑140 (MQ=255)
                                                                                                          agaAACAGTTTTACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGACTTCCTGATGAACTACGACAAGCTCGAGTTCGTCGAAACGGTCGAAGAGCTGGCAGCAATGCACAATCTTGAAGTGCCATTTGAAgca                            >  1:571441/1‑140 (MQ=255)
                                                                                                               cAGTTATACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGACTTCCTGATGAACTACGACAAGCTCGAGTTCGTCGAAACGGTCGAAGAGCTGGCAGCAATGCACAATCTTGAAGTGCCATTTGAAgcaggcag                       <  2:847127/140‑1 (MQ=255)
                                                                                                                   tttACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGACTTCCTGATGAACTACGACAAGCTCGAGTTCGTCGAAACGGTCGAAGAGCTGGCAGCAATGCACAATCTTGAAGTGCCATTTGAAGCAGGCAGCGGc                   <  2:335607/140‑1 (MQ=255)
                                                                                                                   tttACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGACTTCCTGATGAACTACGACAAGCTCGAGTTCGTCGAAACGGTCGAAGAGCTGGCAGCAATGCACAATCTTGAAGTGCCATTTGAAGCAGGCAGCGGc                   <  2:116643/140‑1 (MQ=255)
                                                                                                                   tttACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGACTTCCTGATGAACTACGACAAGCTCGAGTTCGTCGAAACGGTCGAAGAGCTGGCAGCAATGCACAATCTTGAAGTGCCATTTGAAGCAGGCAGCGGc                   <  1:1090514/140‑1 (MQ=255)
                                                                                                                    ttACCACTGCTTTGGATGTAGCGCGCACGGCAACGCGATCGACTTCCTGATGAACTACGACAAGCTCGAGTTCGTCGAAACGGTCGAAGAGCTGGCAGCAATGCACAATCTTGAAGTGCCATTTGAAGCAGGCAGCGGcc                  <  2:908226/140‑1 (MQ=255)
                                                                                                                            gCTTTGGATGTAGCGCGCACGGCAACGCGATCGACTTCCTGATGAACTACGACAAGCTCGAGTTCGTCGAAACGGTCGAAGAGCTGGCAGCAATGCACAATCTTGAAGTGCCATTTGAAGCAGGCAGCGGCCccagccag          >  2:505585/1‑140 (MQ=255)
                                                                                                                            gCTTTGGATGTAGCGCGCACGGCAACGCGATCGACTTCCTGATGAACTACGACAAGCTCGAGTTCGTCGAAACGGTCGAAGAGCTGGCAGCAATGCACAATCTTGAAGTGCCATTTGAAGCAGGCAGCGGCCccagccag          >  2:969684/1‑140 (MQ=255)
                                                                                                                            gCTTTGGATGTAGCGCGCACGGCAACGCGATCGACTTCCTGATGAACTACGACAAGCTCGAGTTCGTCGAAACGGTCGAAGAGCTGGCAGCAATGCACAATCTTGAAGTGCCATTTGAAGCAGGCAGCGGCCccagccag          >  1:1074322/1‑140 (MQ=255)
                                                                                                                               ttGGATGTAGCGCGCACGGCAACGCGATCGACTTCCTGATGAACTACGACAAGCTCGAGTTCGTCGAAACGGTCGAAGAGCTGGCAGCAATGCACAATCTTGAAGTGCCATTTGAAGCAGGCAGCGGCCCCAGCCAGATc       >  2:889186/1‑140 (MQ=255)
                                                                                                                                tGGATGTAGCGCGCACGGCAACGCGATCGACTTCCTGATGAACTACGACAAGCTCGAGTTCGTCGAAACGGTCGAAGAGCTGGCAGCAATGCACAATCTTGAAGTGCCATTTGAAGCAGGCAGCGGCCCCAGCCAGATCg      <  1:1277623/140‑1 (MQ=255)
                                                                                                                                  gATGTAGCGCGCACGGCAACGCGATCGACTTCCTGATGAACTACGACAAGCTCGAGTTCGTCGAAACGGTCGAAGAGCTGGCAGCAATGCACAATCTTGAAGTGCCATTTGAAGCAGGCAGCGGCCCCAGCCAGATCGAg    <  2:990185/140‑1 (MQ=255)
                                                                                                                                    tgtaGCGCGCACGGCAACGCGATCGACTTCCTGATGAACTACGACAAGCTCGAGTTCGTCGAAACGGTCGAAGAGCTGGCAGCAATGCACAATCTTGAAGTGCCATTTGAAGCAGGCAGCGGCCCCAGCCAGATCGAgcg  <  1:699619/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                        
GTCGATCTGATCGATGCCCGTGTGAAGCTGAAAAAGCAGGGCAAGAATTTCCACGCGTGTTGTCCATTCCACAACGAGAAAACCCCGTCCTTCACCGTTAACGGTGAGAAACAGTTTTACCACTGCTTTGGATGTGGCGCGCACGGCAACGCGATCGACTTCCTGATGAACTACGACAAGCTCGAGTTCGTCGAAACGGTCGAAGAGCTGGCAGCAATGCACAATCTTGAAGTGCCATTTGAAGCAGGCAGCGGCCCCAGCCAGATCGAGCG  >  NC_000913/3211164‑3211435

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A