Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A14 F48 I1 R1 75 141.5 4784044 99.1% 4740987 139.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,394,310 G→T A650E (GCG→GAG)  yhdP ← AsmA2 domain‑containing protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,394,3100GT100.0% 419.3 / NA 116A650E (GCG→GAG) yhdPAsmA2 domain‑containing protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (70/46);  total (70/46)

Only 100 of 117 total aligned reads displayed.

TCGAGTGGTTTGATAAACAGACTGTTATTACGCAGCGTCACTTCACCTTTCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCGCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATCACTGCGGTAAGATTACTCGCGCGCAC  >  NC_000913/3394175‑3394446
                                                                                                                                       |                                                                                                                                        
  gAGTGGTTTGATAAACAGACTGTTATTACGCAGCGTCACTTCACCTTTCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCa                                                                                                                                    <  2:1714664/140‑1 (MQ=255)
       gTTTGATAAACAGACTGTTATTACGCAGCGTCACTTCACCTTTCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCAcc                                                                                                                                      <  2:2228721/133‑1 (MQ=255)
       gTTTGATAAACAGACTGTTATTACGCAGCGTCACTTCACCTTTCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCAcc                                                                                                                                      >  1:2228721/1‑133 (MQ=255)
       gTTTGATAAACAGACTGTTATTACGCAGCGTCACTTCACCTTTCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGaa                                                                                                                               >  1:1615278/1‑140 (MQ=255)
       gTTTGATAAACAGACTGTTATTACGCAGCGTCACTTCACCTTTCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGaa                                                                                                                               <  1:1511876/140‑1 (MQ=255)
                 cAGACTGTTATTACGCAGCGTCACTTCACCTTTCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCg                                                                                                                     >  2:516564/1‑140 (MQ=255)
                      tGTTATTACGCAGCGTCACTTCACCTTTCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGtc                                                                                                                >  1:1132958/1‑140 (MQ=255)
                           ttaCGCAGCGTCACTTCACCTTTCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCtcatc                                                                                                           >  1:2234205/1‑140 (MQ=255)
                              cGCAGCGTCACTTCACCTTTCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCaaa                                                                                                        >  1:1701929/1‑140 (MQ=255)
                                cAGCGTCACTTCACCTTTCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGt                                                                                                      >  2:1011288/1‑140 (MQ=255)
                                cAGCGTCACTTCACCTTTCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGt                                                                                                      >  2:1759925/1‑140 (MQ=255)
                                cAGCGTCACTTCACCTTTCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGt                                                                                                      >  2:441594/1‑140 (MQ=255)
                                cAGCGTCACTTCACCTTTCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGt                                                                                                      >  1:1551315/1‑140 (MQ=255)
                                cAGCGTCACTTCACCTTTCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGt                                                                                                      >  1:1312860/1‑140 (MQ=255)
                                cAGCGTCACTTCACCTTTCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGt                                                                                                      >  2:1221970/1‑140 (MQ=255)
                                 aGCGTCACTTCACCTTTCGCAGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTa                                                                                                     <  2:1615278/140‑1 (MQ=255)
                                  gCGTCACTTCACCTTTCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGgtgt                                                                                                                 <  2:1757641/127‑1 (MQ=255)
                                  gCGTCACTTCACCTTTCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTaa                                                                                                    >  1:2331082/1‑140 (MQ=255)
                                  gCGTCACTTCACCTTTCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTaa                                                                                                    >  1:497003/1‑140 (MQ=255)
                                  gCGTCACTTCACCTTTCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTaa                                                                                                    >  2:887725/1‑140 (MQ=255)
                                  gCGTCACTTCACCTTTCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTaa                                                                                                    >  1:2054505/1‑140 (MQ=255)
                                  gCGTCACTTCACCTTTCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTaa                                                                                                    >  1:1961034/1‑140 (MQ=255)
                                  gCGTCACTTCACCTTTCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTaa                                                                                                    >  2:317951/1‑140 (MQ=255)
                                  gCGTCACTTCACCTTTCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTaa                                                                                                    >  1:1098760/1‑140 (MQ=255)
                                  gCGTCACTTCACCTTTCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTaa                                                                                                    >  2:575362/1‑140 (MQ=255)
                                  gCGTCACTTCACCTTTCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCACATCAAAGTaa                                                                                                    >  1:1843735/1‑140 (MQ=255)
                                   cGTCACTTCACCTTTCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAg                                                                                                   >  1:212389/1‑140 (MQ=255)
                                   cGTCACTTCACCTTTCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAg                                                                                                   >  1:973588/1‑140 (MQ=255)
                                   cGTCACTTCACCTTTCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAg                                                                                                   >  2:1778249/1‑140 (MQ=255)
                                   cGTCACTTCACCTTTCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAg                                                                                                   >  2:230396/1‑140 (MQ=255)
                                   cGTCACTTCACCTTTCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAg                                                                                                   >  2:315848/1‑140 (MQ=255)
                                   cGTCACTTCACCTTTCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAg                                                                                                   >  1:546930/1‑140 (MQ=255)
                                     tCACTTCACCTTTCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAggg                                                                                                 >  1:1156283/1‑140 (MQ=255)
                                        attCACCTTTCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCa                                                                                              <  2:14155/139‑1 (MQ=255)
                                         ttCACCTTTCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCaa                                                                                             <  2:546930/140‑1 (MQ=255)
                                         ttCACCTTTCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCaa                                                                                             <  2:1294727/140‑1 (MQ=255)
                                             ccTTTCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGc                                                                                         >  1:182998/1‑140 (MQ=255)
                                              cTTTCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCt                                                                                        <  2:728296/140‑1 (MQ=255)
                                              cTTTCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCt                                                                                        <  2:1551315/140‑1 (MQ=255)
                                              cTTTCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCt                                                                                        <  2:1694411/140‑1 (MQ=255)
                                              cTTTCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCt                                                                                        <  1:654375/140‑1 (MQ=255)
                                              cTTTCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCt                                                                                        <  1:2267924/140‑1 (MQ=255)
                                               tttCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCtt                                                                                       >  1:935827/1‑140 (MQ=255)
                                                ttCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCttt                                                                                      >  1:2297082/1‑140 (MQ=255)
                                                  cgcgGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTAc                                                                                    >  1:124001/1‑140 (MQ=255)
                                                  cgcgGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTAc                                                                                    >  2:1005246/1‑140 (MQ=255)
                                                     ggTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCg                                                                                 <  1:516564/140‑1 (MQ=255)
                                                     ggTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCg                                                                                 <  1:2371850/140‑1 (MQ=255)
                                                     ggTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCg                                                                                 <  1:1778249/140‑1 (MQ=255)
                                                       ttACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGa                                                                               <  2:973588/140‑1 (MQ=255)
                                                       ttACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGa                                                                               <  1:414424/140‑1 (MQ=255)
                                                       ttACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGa                                                                               <  1:627253/140‑1 (MQ=255)
                                                       ttACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTT‑CCCGGAc                                                                              >  1:12532/1‑140 (MQ=255)
                                                        tACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGAc                                                                              >  2:2149218/1‑140 (MQ=255)
                                                             gTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTa                                                                         <  2:2297082/140‑1 (MQ=255)
                                                                 gCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGt                                                                     >  1:1393761/1‑140 (MQ=255)
                                                                 gCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGt                                                                     <  1:1011288/140‑1 (MQ=255)
                                                                 gCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGt                                                                     <  1:230396/140‑1 (MQ=255)
                                                                 gCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGt                                                                     >  2:2162278/1‑140 (MQ=255)
                                                                       cAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGt                                                               <  1:1221970/140‑1 (MQ=255)
                                                                           gggATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAAt                                                           <  2:1156283/140‑1 (MQ=255)
                                                                             gATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCTTCAATca                                                         <  1:2162278/140‑1 (MQ=255)
                                                                               tatCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATcagc                                                       <  2:1488757/140‑1 (MQ=255)
                                                                                        gTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCt                                              >  1:712595/1‑140 (MQ=255)
                                                                                         tAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCtt                                             >  1:2136790/1‑140 (MQ=255)
                                                                                         tAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCtt                                             >  1:290769/1‑140 (MQ=255)
                                                                                           aGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCtttt                                           >  2:1602852/1‑140 (MQ=255)
                                                                                           aGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCtttt                                           >  2:1691310/1‑140 (MQ=255)
                                                                                           aGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCtttt                                           >  1:761604/1‑140 (MQ=255)
                                                                                           aGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCtttt                                           >  1:1171914/1‑140 (MQ=255)
                                                                                           aGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCtttt                                           >  1:2190727/1‑140 (MQ=255)
                                                                                           aGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCtttt                                           >  1:778043/1‑140 (MQ=255)
                                                                                           aGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCtttt                                           >  1:1735550/1‑140 (MQ=255)
                                                                                            acGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTg                                          <  2:838239/139‑1 (MQ=255)
                                                                                             cGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGa                                         <  2:935827/140‑1 (MQ=255)
                                                                                             cGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGa                                         <  2:1098760/140‑1 (MQ=255)
                                                                                              gAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGag                                        <  1:80608/140‑1 (MQ=255)
                                                                                              gAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGag                                        <  1:1759925/140‑1 (MQ=255)
                                                                                               aGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGagt                                       <  1:1602852/140‑1 (MQ=255)
                                                                                               aGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGagt                                       >  2:1693971/1‑140 (MQ=255)
                                                                                                 cATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGagtat                                     >  2:10875/1‑139 (MQ=255)
                                                                                                 cATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGagtag                                     <  2:137034/140‑1 (MQ=255)
                                                                                                   ttCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTc                                   <  2:1171914/140‑1 (MQ=255)
                                                                                                    tCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCa                                  <  2:1312860/140‑1 (MQ=255)
                                                                                                        aTCGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGa                              <  2:2190727/140‑1 (MQ=255)
                                                                                                          cGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATc                            >  2:419893/1‑140 (MQ=255)
                                                                                                          cGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATc                            >  1:1726586/1‑140 (MQ=255)
                                                                                                          cGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATc                            >  2:1008302/1‑140 (MQ=255)
                                                                                                          cGCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATc                            >  2:141065/1‑140 (MQ=255)
                                                                                                           gCCGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATCa                           <  2:1771537/140‑1 (MQ=255)
                                                                                                            ccGTCGAGCTGGAGTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATCAc                          >  2:293287/1‑140 (MQ=255)
                                                                                                                         gTTCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATCACTGCGGTAAGATTa             <  1:315848/140‑1 (MQ=255)
                                                                                                                          ttCTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATCACTGCGGTAAGATTAc            >  2:1218134/1‑140 (MQ=255)
                                                                                                                            cTTGCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATCACTGCGGTAAGATTACTc          >  2:1727970/1‑140 (MQ=255)
                                                                                                                               gCAGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGGCCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATCACTGCGGTAAGATAACTcgcg       >  1:2188629/1‑140 (MQ=255)
                                                                                                                                 aGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATCACTGCGGTAAGATTACTcgcgcg     >  2:192591/1‑140 (MQ=255)
                                                                                                                                 aGGGTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATCACTGCGGTAAGATTACTcgcgcg     >  2:1873116/1‑140 (MQ=255)
                                                                                                                                   ggTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATCACTGCGGTAAGATTACTCgcgcgcc   >  2:873896/1‑139 (MQ=255)
                                                                                                                                   ggTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATCACTGCGGTAAGATTACTCGCGCGCa   >  2:2293201/1‑140 (MQ=255)
                                                                                                                                    gTCTCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATCACTGCGGTAAGATTACTCGCGCGCAc  >  1:106847/1‑140 (MQ=255)
                                                                                                                                       |                                                                                                                                        
TCGAGTGGTTTGATAAACAGACTGTTATTACGCAGCGTCACTTCACCTTTCGCGGTTACCAGTTCGCCGTTCAGCGGGATATCAAGATGTAAGCGAGCATTCACATCGCCGTCGAGCTGGAGTTCTTGCAGGGTCGCACCCAGAGAATCTTTCAGCGGTGTCTCATCAAAGTAAGGGCCAACGGCTTTACCCGGACCTTTAATGTCAGCGTCAATCAGCAGTTTTTCTTTTGAGTAGTCAGGGATCACTGCGGTAAGATTACTCGCGCGCAC  >  NC_000913/3394175‑3394446

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A