Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A14 F48 I1 R1 75 141.5 4784044 99.1% 4740987 139.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,938,138 C→A A282D (GCT→GAT)  rbsK → ribokinase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,938,1380CA99.2% 475.0 / ‑5.3 133A282D (GCT→GAT) rbsKribokinase
Reads supporting (aligned to +/- strand):  ref base C (1/0);  new base A (59/73);  total (60/73)
Fisher's exact test for biased strand distribution p-value = 4.51e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 134 total aligned reads displayed.

TCAGCGCGTTCCTGGATTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACC  >  NC_000913/3938004‑3938271
                                                                                                                                      |                                                                                                                                     
tCAGCGCGTTCCTGGATTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGa                                                                                                                                  <  1:1563980/140‑1 (MQ=255)
tCAGCGCGTTCCTGGATTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGa                                                                                                                                  <  1:1392652/140‑1 (MQ=255)
   gcgcGTTCCTGGATTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTg                                                                                                                               <  2:535452/140‑1 (MQ=255)
   gcgcGTTCCTGGATTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATACTGCCGATGCGATTg                                                                                                                               >  2:1572668/1‑140 (MQ=255)
    cgcgTTCCTGGATTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGc                                                                                                                              >  1:1532877/1‑140 (MQ=255)
      cgTTCCTGGATTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCg                                                                                                                            >  1:2079840/1‑140 (MQ=255)
      cgTTCCTGGATTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCg                                                                                                                            >  1:757900/1‑140 (MQ=255)
      cgTTCCTGGATTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCg                                                                                                                            <  1:48405/140‑1 (MQ=255)
        ttCCTGGATTCCGGGTGTAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTa                                                                                                                          <  2:1686560/140‑1 (MQ=255)
        ttCCTGGATTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTa                                                                                                                          <  1:1911387/140‑1 (MQ=255)
        atCCTGGATTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTa                                                                                                                          <  2:813422/139‑1 (MQ=255)
         tCCTGGATTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTaa                                                                                                                         >  1:708581/1‑140 (MQ=255)
                   cGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAgg                                                                                                               >  1:310113/1‑140 (MQ=255)
                   cGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAgg                                                                                                               >  1:274615/1‑140 (MQ=255)
                   cGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAgg                                                                                                               >  2:556867/1‑140 (MQ=255)
                     ggTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGgcg                                                                                                             <  1:2259840/140‑1 (MQ=255)
                       tGCAGGCTGTCGATTCCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGGATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGca                                                                                                           <  1:259051/140‑1 (MQ=255)
                       tGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGca                                                                                                           <  1:2110148/140‑1 (MQ=255)
                         cAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGcaca                                                                                                         <  1:56392/140‑1 (MQ=255)
                         cAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGcaca                                                                                                         <  2:1539552/140‑1 (MQ=255)
                         cAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGcaca                                                                                                         >  1:69347/1‑140 (MQ=255)
                         cAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGcaca                                                                                                         <  1:203397/140‑1 (MQ=255)
                         cAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATACTGCCGATGCGATTGCCGTAACACGTAAAGGCGcaca                                                                                                         <  1:1572668/140‑1 (MQ=255)
                         cAGGCTGTCGATACCATTGCTGCAGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGcaca                                                                                                         <  1:2323460/140‑1 (MQ=255)
                              tGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCtt                                                                                                    <  2:708581/140‑1 (MQ=255)
                              aggcGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCtt                                                                                                    <  2:193728/137‑1 (MQ=255)
                               gTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTc                                                                                                   >  1:343664/1‑140 (MQ=255)
                                   aTACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTa                                                                                               <  1:124299/140‑1 (MQ=255)
                                     aCCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTAcc                                                                                             <  2:100918/140‑1 (MQ=255)
                                     aCCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTAcc                                                                                             <  1:1945502/140‑1 (MQ=255)
                                     aCCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTAcc                                                                                             <  1:2270183/140‑1 (MQ=255)
                                     aCCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTAcc                                                                                             <  1:483738/140‑1 (MQ=255)
                                       cATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGt                                                                                           >  2:858913/1‑140 (MQ=255)
                                          tgctgcCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGc                                                                                        >  1:2055202/1‑140 (MQ=255)
                                          tgctgcCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGc                                                                                        >  2:276221/1‑140 (MQ=255)
                                          tgctgcCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGc                                                                                        <  2:536029/140‑1 (MQ=255)
                                          tgctgcCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGc                                                                                        >  2:571277/1‑140 (MQ=255)
                                          tgctgcCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCAATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGc                                                                                        <  2:1935497/140‑1 (MQ=255)
                                            ctgcCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGt                                                                                      >  2:336083/1‑140 (MQ=255)
                                              gcCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGa                                                                                    <  1:1056490/140‑1 (MQ=255)
                                              gcCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGa                                                                                    >  2:558463/1‑140 (MQ=255)
                                               ccGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGaa                                                                                   >  1:187767/1‑140 (MQ=255)
                                                 ggAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAaga                                                                                 >  2:771357/1‑140 (MQ=255)
                                                         cTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACg                                                                         <  2:274615/140‑1 (MQ=255)
                                                         cTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACg                                                                         <  2:40624/140‑1 (MQ=255)
                                                         cTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACg                                                                         <  1:506018/140‑1 (MQ=255)
                                                            tAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCAt                                                                      >  1:1302108/1‑140 (MQ=255)
                                                             aaCGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCAtt                                                                     >  2:2240261/1‑140 (MQ=255)
                                                               cGGTGCGTTAATCACGGCATTGCTGGAAGAAACACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACGCGTTACGGCGCGCAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCAtttt                                                                   <  1:574549/140‑1 (MQ=255)
                                                                 gTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTa                                                                 >  2:1707660/1‑140 (MQ=255)
                                                                 gTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTa                                                                 >  2:744138/1‑140 (MQ=255)
                                                                  tGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAg                                                                >  2:624173/1‑140 (MQ=255)
                                                                  tGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAg                                                                >  2:1040226/1‑140 (MQ=255)
                                                                   gCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGa                                                               >  2:1861467/1‑140 (MQ=255)
                                                                   gCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGa                                                               >  1:915959/1‑140 (MQ=255)
                                                                   gCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGa                                                               >  1:1339165/1‑140 (MQ=255)
                                                                   gCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGa                                                               <  1:928922/140‑1 (MQ=255)
                                                                   gCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGa                                                               >  1:165359/1‑140 (MQ=255)
                                                                   gCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGa                                                               >  1:286358/1‑140 (MQ=255)
                                                                   gCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGCGAAGAGATCGACGCATTTTTAGa                                                               >  2:2020109/1‑140 (MQ=255)
                                                                   gCGTTAATCACGGCATTGCTGGAAGAAAAACCA‑TGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGAc                                                              >  2:564311/1‑140 (MQ=255)
                                                                    cGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCTAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGAc                                                              >  1:1967529/1‑140 (MQ=255)
                                                                    cGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGAc                                                              >  1:801552/1‑140 (MQ=255)
                                                                        aaTCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGc                                                          <  2:618600/140‑1 (MQ=255)
                                                                        aaTCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGc                                                          <  1:2157374/140‑1 (MQ=255)
                                                                        aaTCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGc                                                          <  1:297919/140‑1 (MQ=255)
                                                                         aTCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCa                                                         <  2:1499239/140‑1 (MQ=255)
                                                                         aTCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCa                                                         >  2:1820956/1‑140 (MQ=255)
                                                                              ggCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGt                                                    <  1:2375300/140‑1 (MQ=255)
                                                                              ggCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGt                                                    >  2:2202649/1‑140 (MQ=255)
                                                                              ggCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGt                                                    >  2:1043886/1‑140 (MQ=255)
                                                                              ggCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGt                                                    >  2:1924109/1‑140 (MQ=255)
                                                                                cATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGa                                                  >  1:125762/1‑140 (MQ=255)
                                                                                 aTTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGAc                                                 >  2:434834/1‑140 (MQ=255)
                                                                                  ttGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACg                                                <  2:286358/140‑1 (MQ=255)
                                                                                  atGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACg                                                <  2:801552/139‑1 (MQ=255)
                                                                                   tGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGc                                               >  2:2097668/1‑140 (MQ=255)
                                                                                    gCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCt                                              <  2:1985965/140‑1 (MQ=255)
                                                                                     cTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCtt                                             <  2:464022/140‑1 (MQ=255)
                                                                                       ggAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTgg                                           <  1:717818/140‑1 (MQ=255)
                                                                                        gaagaaAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGc                                          <  1:1250770/140‑1 (MQ=255)
                                                                                        gaagaaAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGc                                          <  1:1707660/140‑1 (MQ=255)
                                                                                        gaagaaAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGc                                          <  2:634364/140‑1 (MQ=255)
                                                                                         aagaaAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCt                                         <  2:343664/140‑1 (MQ=255)
                                                                                          agaaAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTa                                        <  2:737896/140‑1 (MQ=255)
                                                                                                  cATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGaaa                                >  2:1647825/1‑140 (MQ=255)
                                                                                                    ttGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGa                              >  1:654468/1‑140 (MQ=255)
                                                                                                      gCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTAc                                       >  2:1993885/1‑129 (MQ=255)
                                                                                                      gCCAGAGGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATg                            >  2:1159098/1‑140 (MQ=255)
                                                                                                      gCCAGAGGCGACTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTAc                                       <  1:1993885/129‑1 (MQ=255)
                                                                                                           agGCGATTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGcc                       >  2:337004/1‑140 (MQ=255)
                                                                                                                aTTCGTTTTGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCt                  >  2:1877207/1‑140 (MQ=255)
                                                                                                                     ttttGCCCATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTggcgg             <  1:434834/140‑1 (MQ=255)
                                                                                                                          cccATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGtt        <  1:1040226/140‑1 (MQ=255)
                                                                                                                          cccATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGtt        <  1:1067309/140‑1 (MQ=255)
                                                                                                                            cATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTc      <  1:1772160/140‑1 (MQ=255)
                                                                                                                            cATGCTGCCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTc      <  1:1924109/140‑1 (MQ=255)
                                                                                                                              tgctgcCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTa    >  1:2104642/1‑140 (MQ=255)
                                                                                                                              tgctgcCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTa    >  1:338328/1‑140 (MQ=255)
                                                                                                                                ctgcCGATGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTAcc  >  2:865046/1‑140 (MQ=255)
                                                                                                                                      |                                                                                                                                     
TCAGCGCGTTCCTGGATTCCGGGTGCAGGCTGTCGATACCATTGCTGCCGGAGATACCTTTAACGGTGCGTTAATCACGGCATTGCTGGAAGAAAAACCATTGCCAGAGGCGATTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACC  >  NC_000913/3938004‑3938271

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A