Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A14 F48 I1 R1 75 141.5 4784044 99.1% 4740987 139.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,015,884 C→T G96S (GGC→AGC)  ysgA ← putative dienelactone hydrolase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,015,8840CT100.0% 538.8 / NA 149G96S (GGC→AGC) ysgAputative dienelactone hydrolase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (69/80);  total (69/80)

Only 100 of 153 total aligned reads displayed.

TAAACGATGAACATCGCCGCCGTTGCGGGAAGCCCAACTGGCGACATGATCGAGATCGGCCAGCACCTGCGAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCCTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGATATGTTCATGCACGCCAAAAATTTCCTGCACTACAATGACCACTGGCAGTGGGCCATCGCTTTGC  >  NC_000913/4015747‑4016020
                                                                                                                                         |                                                                                                                                        
tAAACGATGAACATCGCCGCCGTTGCGGGAAGCCCAACTGGCGACATGATCGAGATCGGCCAGCACCTGCGAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCttt                                                                                                                                        >  1:309232/1‑140 (MQ=255)
aaaaCGATGAACATCGCCGCCGTTGCGGGAAGCCCAACTGGCGACATGATCGAGATCGGCCAGCACCTGCGAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCttt                                                                                                                                        <  2:1793113/139‑1 (MQ=255)
  aaCGATGAACATCGCCGCCGTTGCGGGAAGCCCAACTGGCGACATGATCGAGATCGGCCAGCACCTGCGAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTcg                                                                                                                                      <  2:1720073/140‑1 (MQ=255)
   aCGATGAACATCGCCGCCGTTGCGGGAAGCCCAACTGGCGACATGATCGAGATCGGCCAGCACCTGCGAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTcgc                                                                                                                                     <  2:770309/140‑1 (MQ=255)
       tGAACATCGCCGCCGTTGCGGGAAGCCCAACTGGCGACATGATCGAGATCGGCCAGCACCTGCGAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGaa                                                                                                                                 >  1:1596699/1‑140 (MQ=255)
       tGAACATCGCCGCCGTTGCGGGAAGCCCAACTGGCGACATGATCGAGATCGGCCAGCACCTGCGAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGaa                                                                                                                                 >  1:1929959/1‑140 (MQ=255)
       tGAACATCGCCGCCGTTGCGGGAAGCCCAACTGGCGACATGATCGAGATCGGCCAGCACCTGCGAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGaa                                                                                                                                 >  2:285326/1‑140 (MQ=255)
       tGAACATCGCCGCCGTTGCGGGAAGCCCAACTGGCGACATGATCGAGATCGGCCAGCACCTGCGAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGaa                                                                                                                                 >  2:629595/1‑140 (MQ=255)
       tGAACATCGCCGCCGTTGCGGGAAGCCCAACTGGCGACATGATCGAGATCGGCCAGCACCTGCGAGTCAGGCACTTTGGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGaa                                                                                                                                 >  1:2231400/1‑140 (MQ=255)
        gAACATCGCCGCCGTTGCGGGAAGCCCAACTGGCGACATGATCGAGATCGGCCAGCACCTGCGAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAg                                                                                                                                <  2:2069670/140‑1 (MQ=255)
         aaCATCGCCGCCGTTGCGGGAAGCCCAACTGGCGACATGATCGAGATCGGCCAGCACCTGCGAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGt                                                                                                                               >  2:764040/1‑140 (MQ=255)
          aCATCGCCGCCGTTGCGGGAAGCCCAACTGGCGACATGATCGAGATCGGCCAGCACCTGCGAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTa                                                                                                                              <  1:1665336/140‑1 (MQ=255)
             tCGCCGCCGTTGCGGGAAGCCCAACTGGCGACATGATCGAGATCGGCCAGCACCTGCGAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAg                                                                                                                           >  1:2037499/1‑140 (MQ=255)
              cgccgcCGTTGCGGGAAGCCCAACTGGCGACATGATCGAGATCGGCCAGCACCTGCGAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGt                                                                                                                          <  2:61131/140‑1 (MQ=255)
              cgccgcCGTTGCGGGAAGCCCAACTGGCGACATGATCGAGATCGGCCAGCACCTGCGAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGt                                                                                                                          >  2:2380694/1‑140 (MQ=255)
                  gccgTTGCGGGAAGCCCAACTGGCGACATGATCGAGATCGGCCAGCACCTGCGAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAg                                                                                                                      <  2:309232/140‑1 (MQ=255)
                     gTTGCGGGAAGCCCAACTGGCGACATGATCGAGATCGGCCAGCACCTGCGAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTg                                                                                                                   >  2:2224859/1‑140 (MQ=255)
                       tGCGGGAAGCCCAACTGGCGACATGATCGAGATCGGCCAGCACCTGCGAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCg                                                                                                                 <  1:1499791/140‑1 (MQ=255)
                        gCGGGAAGCCCAACTGGCGACATGATCGAGATCGGCCAGCACCTGCGAGTCAGGCACTTTTGCTACCAGACTGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGa                                                                                                                <  2:18845/140‑1 (MQ=255)
                        gCGGGAAGCCCAACTGGCGACATGATCGAGATCGGCCAGCACCTGCGAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGa                                                                                                                <  2:1588336/140‑1 (MQ=255)
                        gCGGGAAGCCCAACTGGCGACATGATCGAGATCGGCCAGCACCTGCGAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGa                                                                                                                <  1:1750016/140‑1 (MQ=255)
                        gCGGGAAGCCCAACTGGCGACATGATCGAGATCGGCCAGCACCTGCGAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGa                                                                                                                <  1:1048267/140‑1 (MQ=255)
                         cGGGAAGCCCAACTGGCGACATGATCGAGATCGGCCAGCACCTGCGAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGAt                                                                                                               <  1:73514/140‑1 (MQ=255)
                              aGCCCAACTGGCGACATGATCGAGATCGGCCAGCACCTGCGAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCa                                                                                                          <  1:2106707/140‑1 (MQ=255)
                              aGCCCAACTGGCGACATGATCGAGATCGGCCAGCACCTGCGAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCa                                                                                                          >  2:1064512/1‑140 (MQ=255)
                                cccAACTGGCGACATGATCGAGATCGGCCAGCACCTGCGAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGa                                                                                                        <  1:292389/140‑1 (MQ=255)
                                cccAACTGGCGACATGATCGAGATCGGCCAGCACCTGCGAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGa                                                                                                        <  2:1111071/140‑1 (MQ=255)
                                   aaCTGGCGACATGATCGAGATCGGCCAGCACCTGCGAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATAc                                                                                                     <  2:1966348/140‑1 (MQ=255)
                                        gCGACATGATCGAGATCGGCCAGCACCTGCGAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTc                                                                                                <  1:2380694/140‑1 (MQ=255)
                                        gCGACATGATCGAGATCGGCCAGCACCTGCGAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTc                                                                                                <  2:904961/140‑1 (MQ=255)
                                          gACATGATCGAGATCGGCCAGCACCTGCGAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCa                                                                                              >  2:1483781/1‑140 (MQ=255)
                                             aTGATCGAGATCGGCCAGCACCTGCGAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAgcg                                                                                           >  2:228190/1‑140 (MQ=255)
                                                aTCGAGATCGGCCAGCACCTGCGAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCa                                                                                        >  2:1020136/1‑140 (MQ=255)
                                                  cGAGATCGGCCAGCACCTGCGAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGa                                                                                      >  2:2252480/1‑140 (MQ=255)
                                                  cGAGATCGGCCAGCACCTGCGAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGGGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCAATAGCCAGATACCCCTCCAGCGCCAgt                                                                                      >  2:128715/1‑139 (MQ=255)
                                                     gaTCGGCCAGCACCTGCGAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCAGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACgg                                                                                   >  2:489409/1‑140 (MQ=255)
                                                        cGGCCAGCACCTGCGAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGa                                                                                <  2:825315/140‑1 (MQ=255)
                                                          gCCAGCACCTGCGAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACa                                                                              >  1:1614340/1‑140 (MQ=255)
                                                           ccAGCACCTGCGAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACaa                                                                             >  1:2322045/1‑140 (MQ=255)
                                                           ccAGCACCTGCGAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACaa                                                                             >  1:29588/1‑140 (MQ=255)
                                                            cAGCACCTGCGAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACaaa                                                                            <  2:261648/140‑1 (MQ=255)
                                                               cACCTGCGAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGt                                                                         >  1:2013290/1‑140 (MQ=255)
                                                               cACCTGCGAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGt                                                                         >  2:1923002/1‑140 (MQ=255)
                                                               cACCTGCGAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGt                                                                         >  2:602594/1‑140 (MQ=255)
                                                                aCCTGCGAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTc                                                                        <  2:132538/140‑1 (MQ=255)
                                                                aCCTGCGAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTc                                                                        <  2:2015856/140‑1 (MQ=255)
                                                                 ccTGCGAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTcg                                                                       >  2:626925/1‑140 (MQ=255)
                                                                 ccTGCGAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTcg                                                                       <  2:2136724/140‑1 (MQ=255)
                                                                     cGAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGa                                                                   <  1:1020136/140‑1 (MQ=255)
                                                                     cGAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGa                                                                   <  1:1064512/140‑1 (MQ=255)
                                                                     cGAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGa                                                                   >  1:1030914/1‑140 (MQ=255)
                                                                     agAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGa                                                                   <  2:408037/139‑1 (MQ=255)
                                                                            ggCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGATATGTTc                                                            >  1:360785/1‑140 (MQ=255)
                                                                               aCTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGATATGTTCATg                                                         <  1:1334672/140‑1 (MQ=255)
                                                                                   ttGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGATATGTTCATGCACg                                                     >  2:2140586/1‑140 (MQ=255)
                                                                                      cTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGATATGTTCATGCACGCCa                                                  <  2:532140/140‑1 (MQ=255)
                                                                                        aCCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGATATGTTCATGCACGCCaaa                                                >  1:1761575/1‑140 (MQ=255)
                                                                                           aGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGATATGTTCATGc                                                        >  2:1994316/1‑129 (MQ=255)
                                                                                           aGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGATATGTTCATGc                                                        <  1:1994316/129‑1 (MQ=255)
                                                                                            gACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGATATGTTCATGCACGCCAAAAAtt                                            >  1:867866/1‑140 (MQ=255)
                                                                                             aCCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGATATGTTCATGCACGCCAAAAAttt                                           >  2:412804/1‑140 (MQ=255)
                                                                                              ccGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGATATGTTCATGCACGCCAAAAATTTc                                          <  2:1761575/140‑1 (MQ=255)
                                                                                              ccGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGATATGTTCATGCACGCCAAAAATTTc                                          <  2:2322045/140‑1 (MQ=255)
                                                                                              ccGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGATATGTTCATGCACGCCAAAAATTTc                                          <  1:730869/140‑1 (MQ=255)
                                                                                              ccGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGATATGTTCATGCACGCCAAAAATTTc                                          <  2:1204066/140‑1 (MQ=255)
                                                                                              ccGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAACTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGATATGTTCATGCACGCCAAAAATTTc                                          <  2:1805924/140‑1 (MQ=255)
                                                                                              acGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGATATGTTCATGCACGCCAAAAATTTc                                          <  2:360785/139‑1 (MQ=255)
                                                                                                gCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGATATGTTCATGCACGCCAAAAATTTCCt                                        <  2:1559459/140‑1 (MQ=255)
                                                                                                 cTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGATATGTTCATGCACGCCAAAAATTTCCTg                                       <  1:1923002/140‑1 (MQ=255)
                                                                                                 cTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGCCGACAAATGTCGCGGATATGTTCATGCACGCCAAAAATTTCCTg                                       >  1:1794622/1‑140 (MQ=255)
                                                                                                   aaGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGATATGTTCATGCACGCCAAAAATTTCCTGCa                                     <  2:1658577/140‑1 (MQ=255)
                                                                                                   aaGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGATATGTTCATGCACGCCAAAAATTTCCTGCa                                     <  1:2252480/140‑1 (MQ=255)
                                                                                                   aaGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGATATGTTCATGCACGCCAAAAATTTCCTGCa                                     <  2:2231400/140‑1 (MQ=255)
                                                                                                     gCAACGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGATATGTTCATGCACGCCAAAAATTTCCTGCACt                                   <  1:1978167/140‑1 (MQ=255)
                                                                                                        aCGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGATATGTTCATGCACGCCAAAAATTTCCTGCACTACa                                <  2:1596699/140‑1 (MQ=255)
                                                                                                         cGTGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGATATGTTCATGCACGCCAAAAATTTCCTGCa                                     <  2:154674/134‑1 (MQ=255)
                                                                                                           tGGGGATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGATATGTTCATGCACGCCAAAAATTTCCTGCACTACAATg                             >  1:1496064/1‑140 (MQ=255)
                                                                                                              ggATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGATATGTTCATGCACGCCAAAAATTTCCTGCACTACAATGAcc                          >  2:1356500/1‑140 (MQ=255)
                                                                                                              ggATATCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGATATGTTCATGCACGCCAAAAATTTCCTGCACTACAATGAcc                          >  2:1461085/1‑140 (MQ=255)
                                                                                                                atatCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGATATGTTCATGCACGCCAAAAATTTCCTGCACTACAATGACCAc                        <  2:1986462/140‑1 (MQ=255)
                                                                                                                atatCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGATATGTTCATGCACGCCAAAAATTTCCTGCACTACAATGACCAc                        >  2:1140907/1‑140 (MQ=255)
                                                                                                                 tatCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGATATGTTCATGCACGCCAAAAATTTCCTGCACTACAATGACCACt                       >  1:909997/1‑140 (MQ=255)
                                                                                                                 tatCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGATATGTTCATGCACGCCAAAAATTTCCTGCACTACAATGACCACt                       <  1:629595/140‑1 (MQ=255)
                                                                                                                 tatCGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGATATGTTCATGCACGCCAAAAATTTCCTGCACTACAATGACCACt                       <  1:626925/140‑1 (MQ=255)
                                                                                                                   tcagCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGATATGTTCATGCACGCCAAAAATTTCCTGCACTACAATGACCACTgg                     <  1:489409/137‑1 (MQ=255)
                                                                                                                    cGGCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGATATGTTCATGCACGCCAAAAATTTCCTGCACTACAATGACCACTGGc                    >  1:534240/1‑140 (MQ=255)
                                                                                                                     ggCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGATATGTTCATGCACGCCAAAAATTTCCTGCACTACAATGACCACTGGCa                   >  2:118118/1‑140 (MQ=255)
                                                                                                                      gCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGATATGTTCATGCACGCCAAAAATTTCCTGCACTACAATGACCACTGGCAg                  <  2:1036568/140‑1 (MQ=255)
                                                                                                                      gCAAAATCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGATATGTTCATGCACGCCAAAAATTTCCTGCACTACAATGACCACTGGCAg                  <  1:1172596/140‑1 (MQ=255)
                                                                                                                        aaaaTCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGATATGTTCATGCACGCCAAAAATTTCCTGCACTACAATGACCACTGGCAGTg                >  1:2202019/1‑140 (MQ=255)
                                                                                                                          aaTCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGATATGTTCATGCACGCCAAAAATTTCCTGCACTACAGTGACCACTGGCAGTggg              >  1:158243/1‑140 (MQ=255)
                                                                                                                           aTCATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGATATGTTCATGCACGCCAAAAATTTCCTGCACTACAATGACCACTGGCAGTGGGc             <  1:580182/140‑1 (MQ=255)
                                                                                                                             cATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGATATGTTCATGCACGCCAAAAATTTCCTGCACTACAATGACCACTGGCAGTGGGCCa           <  2:1496064/140‑1 (MQ=255)
                                                                                                                             cATTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGATATGTTCATGCACGCCAAAAATTTCCTGCACTACAATGACCACTGGCAGTGGGCCa           <  1:1193656/140‑1 (MQ=255)
                                                                                                                             aaTTCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGATATGTTCATGCACGCCAAAAATTTCCTGCACTACAATGACCACTGGCAGTGGGCCa           <  2:29588/139‑1 (MQ=255)
                                                                                                                                tCGGATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGATATGTTCATGCACGCCAAAAATTTCCTGCACTACAATGACCACTGGCAGTGGGCCATCg        <  2:1764242/140‑1 (MQ=255)
                                                                                                                                  ggATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGATATGTTCATGCACGCCAAAAATTTCCTGCACTACAATGACCACTGGCAGTGGGCCATCgct      <  1:1402217/140‑1 (MQ=255)
                                                                                                                                  ggATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGATATGTTCATGCACGCCAAAAATTTCCTGCACTACAATGACCACTGGCAGTGGGCCATCgct      <  2:829047/140‑1 (MQ=255)
                                                                                                                                   gATCGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGATATGTTCATGCACGCCAAAAATTTCCTGCACTACAATGACCACTGGCAGTGGGCCATCgctt     <  2:1402420/140‑1 (MQ=255)
                                                                                                                                      cGCTTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGATATGTTCATGCACGCCAAAAATTTCCTGCACTACAATGACCACTGGCAGTGGGCCATCgctttgc  <  1:987094/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                        
TAAACGATGAACATCGCCGCCGTTGCGGGAAGCCCAACTGGCGACATGATCGAGATCGGCCAGCACCTGCGAGTCAGGCACTTTTGCTACCAGACCGCTAAGCAACGTGGGGATATCGGCAAAATCATTCGGATCGCCTTCGCGGAAGTAAAGTTCAGGTGCGATAGCCAGATACCCCTCCAGCGCCAGACGGCGACAAATGTCGCGGATATGTTCATGCACGCCAAAAATTTCCTGCACTACAATGACCACTGGCAGTGGGCCATCGCTTTGC  >  NC_000913/4015747‑4016020

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A