Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A14 F48 I1 R1 75 141.5 4784044 99.1% 4740987 139.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,392,304 C→A intergenic (+155/‑56) orn → / → glyV oligoribonuclease/tRNA‑Gly

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,392,3040CA100.0% 244.3 / NA 68intergenic (+155/‑56)orn/glyVoligoribonuclease/tRNA‑Gly
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (33/35);  total (33/35)

AAGCGCCGGAATCCACTTGCGGCGGCGTGATTTTGACGCTAAATTGAACGTCTTGCTGATAATTTCAGCACTTGAGATAAAAACGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCC  >  NC_000913/4392168‑4392434
                                                                                                                                        |                                                                                                                                  
aaGCGCCGGAATCCACTTGCGGCGGCGTGATTTTGACGCTAAATTGAACGTCTTGCTGATAATTTCAGCACTTGAGATAAAAACGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGcc                                                                                                                                 <  2:224935/140‑1 (MQ=255)
   cgcCGGAATCCACTTGCGGCGGCGTGATTTTGACGCTAAATTGAACGTCTTGCTGATAATTTCAGCACTTGAGATAAAAACGCAAAAAAAACTTTTTTTGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTcc                                                                                                                              >  2:673867/1‑140 (MQ=255)
   cgcCGGAATCCACTTGCGGCGGCGTGATTTTGACGCTAAATTGAACGTCTTGCTGATAATTTCAGCACTTGAGATAAAAACGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTcc                                                                                                                              >  2:503363/1‑140 (MQ=255)
   cgcCGGAATCCACTTGCGGCGGCGTGATTTTGACGCTAAATTGAACGTCTTGCTGATAATTTCAGCACTTGAGATAAAAACGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTcc                                                                                                                              <  2:898887/140‑1 (MQ=255)
   cgcCGGAATCCACTTGCGGCGGCGTGATTTTGACGCTAAATTGAACGTCTTGCTGATAATTTCAGCACTTGAGATAAAAACGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTcc                                                                                                                              >  2:1610920/1‑140 (MQ=255)
   cgcCGGAATCCACTTGCGGCGGCGTGATTTTGACGCTAAATTGAACGTCTTGCTGATAATTTCAGCACTTGAGATAAAAACGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTcc                                                                                                                              >  1:273940/1‑140 (MQ=255)
    gcCGGAATCCACTTGCGGCGGCGTGATTTTGACGCTAAATTGAACGTCTTGCTGATAATTTCAGCACTTGAGATAAAAACGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTccc                                                                                                                             >  2:492402/1‑140 (MQ=255)
     ccGGAATCCACTTGCGGCGGCGTGATTTTGACGCTAAATTGAACGTCTTGCTGATAATTTCAGCACTTGAGATAAAAACGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCg                                                                                                                            >  1:1824000/1‑140 (MQ=255)
      cGGAATCCACTTGCGGCGGCGTGATTTTGACGCTAAATTGAACGTCTTGCTGATAATTTCAGCACTTGAGATAAAAACGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGt                                                                                                                           <  2:339090/140‑1 (MQ=255)
      cGGAATCCACTTGCGGCGGCGTGATTTTGACGCTAAATTGAACGTCTTGCTGATAATTTCAGCACTTGAGATAAAAACGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGt                                                                                                                           >  1:1946245/1‑140 (MQ=255)
          aTCCACTTGCGGCGGCGTGATTTTGACGCTAAATTGAACGTCTTGCTGATAATTTCAGCACTTGAGATAAAAACGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAacg                                                                                                                       <  2:5884/140‑1 (MQ=255)
          aTCCACTTGCGGCGGCGTGATTTTGACGCTAAATTGAACGTCTTGCTGATAATTTCAGCACTTGAGATAAAAACGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAacg                                                                                                                       <  2:632597/140‑1 (MQ=255)
               cTTGCGGCGGCGTGATTTTGACGCTAAATTGAACGTCTTGCTGATAATTTCAGCACTTGAGATAAAAACGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCa                                                                                                                  >  1:1808800/1‑140 (MQ=255)
                     gcggcgTGATTTTGACGCTAAATTGAACGTCTTGCTGATAATTTCAGCACTTGAGATAAAAACGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATg                                                                                                            >  2:1072012/1‑140 (MQ=255)
                     gcggcgTGATTTTGACGCTAAATTGAACGTCTTGCTGATAATTTCAGCACTTGAGATAAAAACGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATg                                                                                                            >  1:2244795/1‑140 (MQ=255)
                       ggcgTGATTTTGACGCTAAATTGAACGTCTTGCTGATAATTTCAGCACTTGAGATAAAAACGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATGCg                                                                                                          <  2:756110/140‑1 (MQ=255)
                                    cGCTAAATTGAACGTCTTGCTGATAATTTCAGCACTTGAGATAAAAACGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAg                                                                                             <  1:1659518/140‑1 (MQ=255)
                                    cGCTAAATTGAACGTCTTGCTGATAATTTCAGCACTTGAGATAAAAACGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAg                                                                                             <  1:1610920/140‑1 (MQ=255)
                                      cTAAATTGAACGTCTTGCTGATAATTTCAGCACTTGAGATAAAAACGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCa                                                                                           <  1:587338/140‑1 (MQ=255)
                                      cTAAATTGAACGTCTTGCTGATAATTTCAGCACTTGAGATAAAAACGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCa                                                                                           <  2:1946245/140‑1 (MQ=255)
                                      cTAAATTGAACGTCTCGCTGATAATTTCAGCACTTGAGATAAAAACGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCa                                                                                           <  2:123132/140‑1 (MQ=255)
                                      atAAATTGAACGTCTTGATGATAATTTCAGCACTTGAGATAAAAACGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGGCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCa                                                                                           <  2:1338731/139‑1 (MQ=255)
                                       tAAATTGAACGTCTTGCTGATAATTTCAGCACTTGAGATAAAAACGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCaa                                                                                          >  2:1590478/1‑140 (MQ=255)
                                       tAAATTGAACGTCTTGCTGATAATTTCAGCACTTGAGATAAAAACGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCaa                                                                                          >  1:1540699/1‑140 (MQ=255)
                                         aaTTGAACGTCTTGCTGATAATTTCAGCACTTGAGATAAAAACGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCaaaa                                                                                        <  1:1961385/140‑1 (MQ=255)
                                         aaTTGAACGTCTTGCTGATAATTTCAGCACTTGAGATAAAAACGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCaaaa                                                                                        <  2:273940/140‑1 (MQ=255)
                                              aaCGTCTTGCTGATAATTTCAGCACTTGAGATAAAAACGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAag                                                                                   <  1:492402/140‑1 (MQ=255)
                                                cGTCTTGCTGATAATTTCAGCACTTGAGATAAAAACGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAagta                                                                                 <  1:266219/140‑1 (MQ=255)
                                                 gTCTTGCTGATAATTTCAGCACTTGAGATAAAAACGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAagtag                                                                                <  2:1202728/140‑1 (MQ=255)
                                                 gTCTTGCTGATAATTTCAGCACTTGAGATAAAAACGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAagtag                                                                                <  2:1393539/140‑1 (MQ=255)
                                                 gTCTTGCTGATAATTTCAGCACTTGAGATAAAAACGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAagtag                                                                                <  1:1205706/140‑1 (MQ=255)
                                                   cTTGCTGATAATTTCAGCACTTGAGATAAAAACGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAgtagta                                                                              >  2:507363/1‑140 (MQ=255)
                                                   cTTGCTGATAATTTCAGCACTTGAGATAAAAACGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAgtagta                                                                              >  2:1433211/1‑140 (MQ=255)
                                                   cTTGCTGATAATTTCAGCACTTGAGATAAAAACGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAgtagta                                                                              >  2:860657/1‑140 (MQ=255)
                                                   cTTGCTGATAATTTCAGCACTTGAGATAAAAACGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAgtagta                                                                              >  2:1163153/1‑140 (MQ=255)
                                                   cTTGCTGATAATTTCAGCACTCGAGATAAAAACGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAgtagta                                                                              >  2:2314816/1‑140 (MQ=255)
                                                    ttGCTGATAATTTCAGCACTTGAGATAAAAACGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTAc                                                                             >  1:724324/1‑140 (MQ=255)
                                                     tGCTGATAATTTCAGCACTTGAGATAAAAACGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTAcg                                                                            >  1:904747/1‑140 (MQ=255)
                                                     tGCTGATAATTTCAGCACTTGAGATAAAAACGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTAcg                                                                            >  1:320835/1‑140 (MQ=255)
                                                               ttCAGCACTTGAGATAAAAACGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGc                                                                  <  1:778904/140‑1 (MQ=255)
                                                               ttCAGCACTTGAGATAAAAACGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGc                                                                  <  2:1824000/140‑1 (MQ=255)
                                                               ttCAGCACTTGAGATAAAAACGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGc                                                                  <  2:2176980/140‑1 (MQ=255)
                                                                tCAGCACTTGAGATAAAAACGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCt                                                                 <  1:1713191/140‑1 (MQ=255)
                                                                 cAGCACTTGAGATAAAAACGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTc                                                                <  1:1433211/140‑1 (MQ=255)
                                                                 cAGCACTTGAGATAAAAACGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTc                                                                >  2:2196890/1‑140 (MQ=255)
                                                                   gCACTTGAGATAAAAACGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAg                                                              <  1:1590478/140‑1 (MQ=255)
                                                                    cACTTGAGATAAAAACGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGt                                                             <  1:401393/140‑1 (MQ=255)
                                                                       ttGAGATAAAAACGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATATCTCAGTTgg                                                          <  2:1540699/140‑1 (MQ=255)
                                                                         gagaTAAAAACGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTa                                                        >  2:1195183/1‑140 (MQ=255)
                                                                            aTAAAAACGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTagag                                                     >  2:2220917/1‑140 (MQ=255)
                                                                              aaaaaCGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCa                                                   <  2:904747/140‑1 (MQ=255)
                                                                              aaaaaCGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCa                                                   >  2:1929906/1‑140 (MQ=255)
                                                                              aaaaaCGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCa                                                   <  1:1541156/140‑1 (MQ=255)
                                                                              aaaaaCGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCa                                                   <  2:2145937/140‑1 (MQ=255)
                                                                                      aaaaaaaaCTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTg                                           >  2:1226706/1‑140 (MQ=255)
                                                                                        aaaaaaCTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGcc                                         <  1:2220917/140‑1 (MQ=255)
                                                                                        aaaaaaCTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGcc                                         >  1:26319/1‑140 (MQ=255)
                                                                                                tttttGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCgg                                 >  1:95765/1‑140 (MQ=255)
                                                                                                  tttGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCgggg                               >  1:1811873/1‑140 (MQ=255)
                                                                                                   ttGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGt                              >  1:573787/1‑140 (MQ=255)
                                                                                                         ggTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAg                        >  2:1152181/1‑140 (MQ=255)
                                                                                                          gTTGCAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGt                       >  2:1666992/1‑140 (MQ=255)
                                                                                                              cAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGt                       <  1:749603/136‑1 (MQ=255)
                                                                                                              cAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGt                       >  2:749603/1‑136 (MQ=255)
                                                                                                              cAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGa                   <  2:573787/140‑1 (MQ=255)
                                                                                                              cAGAGGGAAAGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTAGCGAGTTCGa                   <  1:860657/140‑1 (MQ=255)
                                                                                                                     aaaGATTTCTCGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGt            >  1:580588/1‑140 (MQ=255)
                                                                                                                              tcGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTc   >  1:1294297/1‑140 (MQ=255)
                                                                                                                               cGTATAATGAGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCAAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTcc  <  1:868746/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                  
AAGCGCCGGAATCCACTTGCGGCGGCGTGATTTTGACGCTAAATTGAACGTCTTGCTGATAATTTCAGCACTTGAGATAAAAACGCAAAAAAAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCC  >  NC_000913/4392168‑4392434

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A