Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A15 F48 I1 R1	115	87.5	3003888	99.1%	2976853	139.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,901,145	G→T	G185V (GGG→GTG)	yqcE →	putative transport protein YqcE

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,901,145	0	G	T	100.0%	339.7 / NA	96	G185V (GGG→GTG)	yqcE	putative transport protein YqcE
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (56/40); total (56/40)

TGGAAGGGCTGCGCGGCGTCGGTGTAATGTCGCTGGCGGTGTTTACCATGTGGGTCTTTTCTCGCTTTGCACCGGATGACAGCACCAGCCTGAAAACGGTCATTATCATCTATAGTGTGGTTTACATCTTGTTGGGGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCGTATCAGCACCACCTGGTATTGCAGCATGGTGATTTTT  >  NC_000913/2901010‑2901284

tggaAGGGCTGCGCGGCGTCGGTGTAATGTCGCTGGCGGTGTTTACCATGTGGGTCTTTTCTCGCTTTGCACCGGATGACAGCACCAGCCTGAAAACGGTCATTATCATCTATAGTGTGGTTTACATCTTGTTGGTGAtt                                                                                                                                          <  2:21295/140‑1 (MQ=255)

      ggCTGCGCGGCGTCGGTGTAATGTCGCTGGCGGTGTTTACCATGTGGGTCTTTTCTCGCTTTGCACCGGATGACAGCACCAGCCTGAAAACGGTCATTATCATCTATAGTGTGGTTTACATCTTGTTGGTGATTCTGTGc                                                                                                                                    >  1:874702/1‑140 (MQ=255)

       gCTGCGCGGCGTCGGTGTAATGTCGCTGGCGGTGTTTACCATGTGGGTCTTTTCTCGCTTTGCACCGGATGACAGCACCAGCCTGAAAACGGTCATTATCATCTATAGTGTGGTTTACATCTTGTTGGTGATTCTGTGCt                                                                                                                                   <  1:903336/140‑1 (MQ=255)

        cTGCGCGGCGTCGGTGTAATGTCGCTGGCGGTGTTTACCATGTGGGTCTTTTCTCGCTTTGCACCGGATGACAGCACCAGCCTGAAAACGGTCATTATCATCTATAGTGTGGTTTACATCTTGTTGGTGATTCTGTGCtt                                                                                                                                  >  2:595337/1‑139 (MQ=255)

        cTGCGCGGCGTCGGTGTAATGTCGCTGGCGGTGTTTACCATGTGGGTCTTTTCTCGCTTTGCACCGGATGACAGCACCAGCCTGAAAACGGTCATTATCATCTATAGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTg                                                                                                                                  >  2:925011/1‑140 (MQ=255)

           cgcgGCGTCGGTGTAATGTCGCTGGCGGTGTTTACCATGTGGGTCTTTTCTCGCTTTGCACCGGATGACAGCACCAGCCTGAAAACGGTCATTATCATCTATAGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGtt                                                                                                                               >  2:197986/1‑140 (MQ=255)

                  tCGGTGTAATGTCGCTGGCGGTGTTTACTATGTGGGTCTTTTCTCGCTTTGCACCGGATGACAGCACCAACCTTAACACCGTCCTTTTCATCTATAGTGTGGTCTACATCTTGTTGGTAATTTTGTGATGGTTTTTTGtc                                                                                                                        <  2:1410121/140‑2 (MQ=255)

                     gtgtAATGTCGCTGGCGGTGTTTACCATGTGGGTCTTTTCTCGCTTTGCACCGGATGACAGCACCAGCCTGAAAACGGTCATTATCATCTATAGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGc                                                                                                                     <  2:1134934/140‑1 (MQ=255)

                      tgtAATGTCGCTGGCGGTGTTTACCATGTGGGTCTTTTCTCGCTTTGCACCGGATGACAGCACCAGCCTGAAAACGGTCATTATCATCTATAGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCg                                                                                                                    <  1:645211/140‑1 (MQ=255)

                       gtAATGTCGCTGGCGGTGTTTACCATGTGGGTCTTTTCTCGCTTTGCACCGGATGACAGCACCAGCCTGAAAACGGTCATTATCATCTATAGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGa                                                                                                                   <  1:1364901/140‑1 (MQ=255)

                       gtAATGTCGCTGGCGGTGTTTACCATGTGGGTCTTTTCTCGCTTTGCACCGGATGACAGCACCAGCCTGAAAACGGTCATTATCATCTATAGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGa                                                                                                                   <  1:153537/140‑1 (MQ=255)

                       gtAATGTCGCTGGCGGTGTTTACCATGTGGGTCTTTTCTCGCTTTGCACCGGATGACAGCACCAGCCTGAAAACGGTCATTATCATCTATAGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGa                                                                                                                   <  2:62636/140‑1 (MQ=255)

                            gTCGCTGGCGGTGTTTACCATGTGGGTCTTTTCTCGCTTTGCACCGGATGACAGCACCAGCCTGAAAACGGTCATTATCATCTATAGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATaaca                                                                                                              <  2:656419/140‑1 (MQ=255)

                               gCTGGCGGTGTTTACCATGTGGGTCTTTTCTCGCTTTGCACCGGATGACAGCACCAGCCTGAAAACGGTCATTATCATCTATAGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATaacaaca                                                                                                           >  2:879070/1‑140 (MQ=255)

                                cTGGCGGTGTTTACCATGTGGGTCTTTTCTCGCTTTGCACCGGATGACAGCACCAGCCTGAAAACGGTCATTATCATCTATAGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATaacaacaa                                                                                                          >  1:429911/1‑140 (MQ=255)

                                cTGGCGGTGTTTACCATGTGGGGCTTTTCTCGCTTTGCACCGGATGACAGCACCAGCCTGAAAACGGTCATTATCATCTATAGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATaacaacaa                                                                                                          >  2:512749/1‑140 (MQ=255)

                                    cGGTGTTTACCATGTGGGTCTTTTCTCGCTTTGCACCGGATGACAGCACCAGCCTGAAAACGGTCATTATCATCTATAGTGTGGTTTACATCTCGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTg                                                                                                      >  2:359039/1‑140 (MQ=255)

                                      gtgtTTACCATGTGGGTCTTTTCTCGCTTTGCACCGGATGACAGCACCAGCCTGAAAACGGTCATTATCATCTATAGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTgcg                                                                                                    <  2:341546/140‑1 (MQ=255)

                                       tgtTTACCATGTGGGTCTTTTCTCGCTTTGCACCGGATGACAGCACCAGCCTGAAAACGGTCATTATCATCTATAGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTgcgc                                                                                                   <  1:882130/140‑1 (MQ=255)

                                       tgtTTACCATGTGGGTCTTTTCTCGCTTTGCACCGGATGACAGCACCAGCCTGAAAACGGTCATTATCATCTATAGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTgcgc                                                                                                   <  1:440051/140‑1 (MQ=255)

                                       tgtTTACCATGTGGGTCTTTTCTCGCTTTGCACCGGATGACAGCACCAGCCTGAAAACGGTCATTATCATCTATAGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTgcgc                                                                                                   <  1:552928/140‑1 (MQ=255)

                                       tgtTTACCATGTGGGTCTTTTCTCGCTTTGCACCGGATGACAGCACCAGCCTGAAAACGGTCATTATCATCTATAGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTgcgc                                                                                                   <  1:1499259/140‑1 (MQ=255)

                                       tgtTTACCATGTGGGTCTTTTCTCGCTTTGCACCGGATGACAGCACCAGCCTGAAAACGGTCATTATCATCTATAGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTgcgc                                                                                                   <  1:1200412/140‑1 (MQ=255)

                                        gtTTACCATGTGGGTCTTTTCTCGCTTTGCACCGGATGACAGCACCAGCCTGAAAACGGTCATTATCATCTATAGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCa                                                                                                  <  1:1013646/140‑1 (MQ=255)

                                                  tgGGTCTTTTCTCGCTTTGCACCGGATGACAGCACCAGCCTGAAAACGGTCATTATCATCTATAGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑aa                                                                                       <  2:1267776/140‑1 (MQ=255)

                                                  atggTCTTTTCTCGCTTTGCACCGGATGACAGCACCAGCCTGAAAACGGTCATTATCATCTATAGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑aa                                                                                       <  2:246684/138‑1 (MQ=255)

                                                   gggTCTTTTCTCGCTTTGCACCGGATGACAGCACCAGCCTGAAAACGGTCATTATCATCTATAGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AAc                                                                                      >  1:216898/1‑140 (MQ=255)

                                                   gggTCTTTTCTCGCTTTGCACCGGATGACAGCACCAGCCTGAAAACGGTCATTATCATCTATAGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AAc                                                                                      >  2:516012/1‑140 (MQ=255)

                                                   gggTCTTTTCTCGCTTTGCACCGGATGACAGCACCAGCCTGAAAACGGTCATTATCATCTATAGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AAc                                                                                      >  1:183881/1‑140 (MQ=255)

                                                   gggTCTTTTCTCGCTTTGCACCGGATGACAGCACCAGCCTGAAAACGGTCATTATCATCTATAGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AAc                                                                                      >  1:530752/1‑140 (MQ=255)

                                                   gagTCTTTTCTCGCTTTGCACCGGATGACAGCACCAGCCTGAAAACGGTCATTATCATCTATAGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AAc                                                                                      >  2:1374796/3‑140 (MQ=255)

                                                            ctcGCTTTGCACCGGATGACAGCACCAGCCTGAAAACGGTCATTATCATCTATAGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGaaaaa                                                                             >  2:542129/1‑140 (MQ=255)

                                                                cTTTGCACCGGATGACAGCACCAGCCTGAAAACGGTCATTATCATCTATAGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGt                                                                         <  2:10914/140‑1 (MQ=255)

                                                                      aCCGGATGACAGCACCAGCCTGAAAACGGTCATTATCATCTATAGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTcc                                                                   <  1:1311044/140‑1 (MQ=255)

                                                                             gACAGCACCAGCCTGAAAACGGTCATTATCATCTATAGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAg                                                            >  1:735540/1‑140 (MQ=255)

                                                                               cAGCACCAGCCTGAAAACGGTCATTATCATCTATAGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCg                                                          >  1:290438/1‑140 (MQ=255)

                                                                                  cACCAGCCTGAAAACGGTCATTATCATCTATAGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACa                                                       >  1:1166970/1‑140 (MQ=255)

                                                                                  cACCAGCCTGAAAACGGTCATTATCATCTATAGTGTGGTTTACATCTTGTTGGTGATTCTGGGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAgttact                                                       >  2:833014/1‑135 (MQ=255)

                                                                                    ccAGCCTGAAAACGGTCATTATCATCTATAGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATc                                                     >  1:818686/1‑140 (MQ=255)

                                                                                    ccAGCCTGAAAACGGTCATTATCATCTATAGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATc                                                     >  1:1039137/1‑140 (MQ=255)

                                                                                    ccAGCCTGAAAACGGTCATTATCATCTATAGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATc                                                     >  1:47682/1‑140 (MQ=255)

                                                                                     cAGCCTGAAAACGGTCATTATCATCTATAGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATcc                                                    <  1:925011/140‑1 (MQ=255)

                                                                                       gCCTGAAAACGGTCATTATCATCTATAGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTg                                                  >  2:1184268/1‑140 (MQ=255)

                                                                                       gCCTGAAAACGGTCATTATCATCTATAGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTg                                                  >  2:549839/1‑140 (MQ=255)

                                                                                          tGAAAACGGTCATTATCATCTATAGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGcc                                               >  1:1500222/1‑140 (MQ=255)

                                                                                            aaaaCGGTCATTATCATCTATAGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACGTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGt                                             >  2:1133321/1‑140 (MQ=255)

                                                                                                cGGTCATTATCATCTATAGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTAAGCGACATCCTGGCCGTTTTg                                         <  1:251160/140‑1 (MQ=255)

                                                                                                  gTCATTATCATCTATAGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCg                                       >  1:1039167/1‑140 (MQ=255)

                                                                                                  gTCATTATCATCTATAGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCg                                       >  2:836298/1‑140 (MQ=255)

                                                                                                  gTCATTATCATCTATAGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCg                                       >  2:306572/1‑140 (MQ=255)

                                                                                                    cATTATCATCTATAGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCGTa                                     <  1:1184268/140‑1 (MQ=255)

                                                                                                     aTTATCATCTATAGTGTGGTTTACATTTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAGCAACATGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCGTAt                                    <  1:1374796/140‑1 (MQ=255)

                                                                                                          catcTATAGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACATCAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCGTATCAGca                               <  1:197986/140‑1 (MQ=255)

                                                                                                          catcTATAGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCGTATCAGca                               <  1:628863/140‑1 (MQ=255)

                                                                                                          catcTATAGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCGTATCAGca                               <  2:216898/140‑1 (MQ=255)

                                                                                                          catcTATAGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCGTATCAGca                               <  1:542129/140‑1 (MQ=255)

                                                                                                               ataGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCGTATCAGCaccacc                          <  1:1232954/140‑1 (MQ=255)

                                                                                                               ataGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCGTATCAGCaccacc                          <  2:429911/140‑1 (MQ=255)

                                                                                                                taGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAATAAACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCGTATCAGCaccacc                          <  1:53617/140‑1 (MQ=255)

                                                                                                                taGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCGTATCAGCACCACCt                         >  2:341660/1‑140 (MQ=255)

                                                                                                                 aGTGTGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCGTATCAGCACCACCTg                        >  2:1037364/1‑140 (MQ=255)

                                                                                                                  gtgtGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCGTATCAGCACCACCTgg                       <  1:48559/140‑1 (MQ=255)

                                                                                                                  gtgtGGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCGTATCAGCACCACCTgg                       <  1:836298/140‑1 (MQ=255)

                                                                                                                   tgtgGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCGTATCAg                                 <  2:404440/129‑1 (MQ=255)

                                                                                                                   tgtgGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCGTATCAg                                 >  1:404440/1‑129 (MQ=255)

                                                                                                                   tgtgGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCGTATCAGCACCACCTGGt                      >  1:679371/1‑140 (MQ=255)

                                                                                                                   tgtgGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCGTATCAGCACCACCTGGt                      >  1:198769/1‑140 (MQ=255)

                                                                                                                   tgtgGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCGTATCAGCACCACCTGGt                      >  2:447641/1‑140 (MQ=255)

                                                                                                                   tgtgGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCGTATCAGCACCACCTGGt                      >  2:156482/1‑140 (MQ=255)

                                                                                                                   tgtgGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCGTATCAGCACCACCTGGt                      >  2:718064/1‑140 (MQ=255)

                                                                                                                   tgtgGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCGTATCAGCACCACCTGGt                      >  2:925845/1‑140 (MQ=255)

                                                                                                                   tgtgGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCGTATCAGCACCACCTGGt                      >  1:776113/1‑140 (MQ=255)

                                                                                                                   tgtgGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCGTATCAGCACCACCTGGt                      >  1:65094/1‑140 (MQ=255)

                                                                                                                    gtgGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCGTATCAGCACCACCTGGTa                     <  1:752503/140‑1 (MQ=255)

                                                                                                                     tgGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCGTATCAGCACCACCTGGTAt                    <  2:799140/140‑1 (MQ=255)

                                                                                                                     tgGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCGTATCAGCACCACCTGGTAt                    >  1:1173637/1‑140 (MQ=255)

                                                                                                                     tgGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCGTATCAGCACCACCTGGTAt                    >  1:1153359/1‑140 (MQ=255)

                                                                                                                     tgGTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCGTATCAGCACCACCTGGTAt                    >  2:491524/1‑140 (MQ=255)

                                                                                                                      ggTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCGTATCAGCACCACCTGGTAtt                   >  2:371760/1‑140 (MQ=255)

                                                                                                                       gTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCGTATCAGCACCACCTGGTATTg                  >  1:383515/1‑140 (MQ=255)

                                                                                                                       gTTTACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCGTATCAGCACCACCTGGTATTg                  <  1:549839/140‑1 (MQ=255)

                                                                                                                       gTTTACATCTCGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCGTATCAGCACCACCTGGTATTg                  <  1:359039/140‑1 (MQ=255)

                                                                                                                        tttACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAACCAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCGTATCAGCACCACCTGGTATTgc                 >  2:260188/1‑140 (MQ=255)

                                                                                                                        tttACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCGTATCAGCACCACCTGGTATTgc                 >  2:670334/1‑140 (MQ=255)

                                                                                                                        tttACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCGTATCAGCACCACCTGGTATTgc                 >  2:954178/1‑140 (MQ=255)

                                                                                                                        tttACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCGTATCAGCACCACCTGGTATTgc                 >  1:837950/1‑140 (MQ=255)

                                                                                                                        tttACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCGTATCAGCACCACCTGGTATTgc                 >  2:1098379/1‑140 (MQ=255)

                                                                                                                        tttACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCGTATCAGCACCACCTGGTATTgc                 >  2:662759/1‑140 (MQ=255)

                                                                                                                        tttACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCGTATCAGCACCACCTGGTATTgc                 >  2:1282569/1‑140 (MQ=255)

                                                                                                                        tttACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCGTATCAGCACCACCTGGTATTgc                 >  2:1469056/1‑140 (MQ=255)

                                                                                                                        tttACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCGTATCAGCACCACCTGGTATTgc                 >  2:193673/1‑140 (MQ=255)

                                                                                                                          tACATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCGTATCAGCACCACCTGGTATTgcag               <  2:335044/140‑1 (MQ=255)

                                                                                                                           aCATCTTGTTGGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCGTATCAGCACCACCTGGTATTgcagc              <  1:512749/140‑1 (MQ=255)

                                                                                                                                 tgttgGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCGTATCAGCACCACCTGGTATTGCAGCATGGTg        >  2:1318883/1‑140 (MQ=255)

                                                                                                                                 tgttgGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCGTATCAGCACCACCTGGTATTGCAGCATGGTg        >  1:493215/1‑140 (MQ=255)

                                                                                                                                 tgttgGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCGTATCAGCACCACCTGGTATTGCAGCATGGTg        >  2:791124/1‑140 (MQ=255)

                                                                                                                                 tgttgGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCGTATCAGCACCACCTGGTATTGCAGCATGGTg        >  1:479568/1‑140 (MQ=255)

                                                                                                                                 tgttgGTGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCGTATCAGCACCACCTGGTATTGCAGCATGGTg        >  1:594116/1‑140 (MQ=255)

                                                                                                                                       ggATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCGTATCAGCACCACCTGGTATTGCAGCATGGTGAttttt  <  2:1039137/140‑1 (MQ=255)

TGGAAGGGCTGCGCGGCGTCGGTGTAATGTCGCTGGCGGTGTTTACCATGTGGGTCTTTTCTCGCTTTGCACCGGATGACAGCACCAGCCTGAAAACGGTCATTATCATCTATAGTGTGGTTTACATCTTGTTGGGGATTCTGTGCTGGTTTTTTGTTAGCGATAACAACAACCTGCGCAGTGCCAAT‑AACGAAGAAAAACAGTCATTCCAGCTTAGCGACATCCTGGCCGTTTTGCGTATCAGCACCACCTGGTATTGCAGCATGGTGATTTTT  >  NC_000913/2901010‑2901284

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A