Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A15 F48 I1 R1	115	87.5	3003888	99.1%	2976853	139.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,939,128	C→T	L81F (CTC→TTC)	fucU →	L‑fucose mutarotase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,939,128	0	C	T	100.0%	264.9 / NA	75	L81F (CTC→TTC)	fucU	L‑fucose mutarotase
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (42/33); total (42/33)

CCCATTCGATGGGACCGCAGGTGATCCGCGCTGATGGCCTGTTGGTGAGCGACTTGCTCCAGGCGATTATCCCGTTATTTGAACTGGACAGTTATGCACCGCCGCTGGTGATGATGGCGGCGGTAGAAGGTGACACTCTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAAGCCCCGTGTCCTGACATCATCCGCATCAATCGTTTTGCGTTTTATGAACGGGCGCAAAAAGCCTTTGCGATCGTTATCACAGGCGAAC  >  NC_000913/2938991‑2939263

cccATTCGATGGGACCGCAGGTGATCCGCGCTGATGGCCTGTTGGTGAGCGACTTGCTCCAGGCGATTATCCCGTTATTTGAACTGGACAGTTATGCACCGCCGCTGGTGATGATGGCGGCGGTAGAAGGTGACACtttc                                                                                                                                       <  2:437483/140‑1 (MQ=255)

    ttCGATGGGACCGCAGGTGATCCGCGCTGATGGCCTGTTGGTGAGCGACTTGCTCCAGGCGATTATCCCGTTATTTGAACTGGACAGTTATGCACCGCCGCTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATc                                                                                                                                   <  2:370927/140‑1 (MQ=255)

    ttCGATGGGACCGCAGGTGATCCGCGCTGATGGCCTGTTGGTGAGCGACTTGCTCCAGGCGATTATCCCGTTATTTGAACTGGACAGTTATGCACCGCCGCTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATc                                                                                                                                   <  2:377384/140‑1 (MQ=255)

    ttCGATGGGACCGCAGGTGATCCGCGCTGATGGCCTGTTGGTGAGCGACTTGCTCCAGGCGATTATCCCGTTATTTGAACTGGACAGTTATGCACCGCCGCTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATc                                                                                                                                   <  1:1230923/140‑1 (MQ=255)

     tCGATGGGACCGCAGGTGATCCGCGCTGATGGCCTGTTGGTGAGCGACTTGCTCCAGGCGATTATCCCGTTATTTGAACTGGACAGTTATGCACCGCCGCTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATcc                                                                                                                                  <  1:367126/140‑1 (MQ=255)

     tCGATGGGACCGCAGGTGATCCGCGCTGATGGCCTGTTGGTGAGCGACTTGCTCCAGGCGATTATCCCGTTATTTGAACTGGACAGTTATGCACCGCCGCTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATcc                                                                                                                                  <  2:608139/140‑1 (MQ=255)

       gATGGGACCGCAGGTGATCCGCGCTGATGGCCTGTTGGTGAGCGACTTGCTCCAGGCGATTATCCCGTTATTTGAACTGGACAGTTATGCACCGCCGCTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTg                                                                                                                                <  1:366400/140‑1 (MQ=255)

             aCCGCAGGTGATCCGCGCTGATGGCCTGTTGGTGAGCGACTTGCTCCAGGCGATTATCCCGTTATTTGAACTGGACAGTTATGCACCGCCGCTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAg                                                                                                                          >  2:1192130/1‑140 (MQ=255)

             aCCGCAGGTGATCCGCGCTGATGGCCTGTTGGTGAGCGACTTGCTCCAGGCGATTATCCCGTTATTTGAACTGGACAGTTATGCACCGCCGCTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAg                                                                                                                          <  1:1192130/140‑1 (MQ=255)

               cGCAGGTGATCCGCGCTGATGGCCTGTTGGTGAGCGACTTGCTCCAGGCGATTATCCCGTTATTTGAACTGGACAGTTATGCACCGCCGCTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGaa                                                                                                                        >  2:1187225/1‑140 (MQ=255)

                gCAGGTGATCCGCGCTGATGGCCTGTTGGTGAGCGACTTGCTCCAGGCGATTATCCCGTTATTTGAACTGGACAGTTATGCACCGCCGCTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAac                                                                                                                       <  1:779045/140‑1 (MQ=255)

                       aTCCGCGCTGATGGCCTGTTGGTGAGCGACTTGCTCCAGGCGATTATCCCGTTATTTGAACTGGACAGTTATGCACCGCCGCTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTa                                                                                                                >  1:854677/1‑140 (MQ=255)

                       aTCCGCGCTGATGGCCTGTTGGTGAGCGACTTGCTCCAGGCGATTATCCCGTTATTTGAACTGGACAGTTATGCACCGCCGCTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTa                                                                                                                <  2:851976/140‑1 (MQ=255)

                            cgcTGATGGCCTGTTGGTGAGCGACTTGCTCCAGGCGATTATCCCGTTATTTGAACTGGACAGTTATGCACCGCCGCTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTa                                                                                                           >  2:1361544/1‑140 (MQ=255)

                            cgcTGATGGCCTGTTGGTGAGCGACTTGCTCCAGGCGATTATCCCCTTATTTGAACTGGACAGTTATGCACCGCCGCTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGaa                                                                                                                        <  2:215706/127‑1 (MQ=255)

                            cgcTGATGGCCTGTTGGTGAGCGACTTGCTCCAGGCGATTATCCCCTTATTTGAACTGGACAGTTATGCACCGCCGCTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGaa                                                                                                                        >  1:215706/1‑127 (MQ=255)

                               tGATGGCCTGTTGGTGAGCGACTTGCTCCAGGCGATTATCCCGTTATTTGAACTGGACAGTTATGCACCGCCGCTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATg                                                                                                        <  1:1050590/140‑1 (MQ=255)

                               tGATGGCCTGTTGGTGAGCGACTTGCTCCAGGCGATTATCCCGTTATTTGAACTGGACAGTTATGCACCGCCGCTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATg                                                                                                        <  1:312259/140‑1 (MQ=255)

                               tGATGGCCTGTTGGTGAGCGACTTGCTCCAGGCGATTATCCCGTTATTTGAACTGGACAGTTATGCACCGCCGCTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATg                                                                                                        <  1:1187225/140‑1 (MQ=255)

                                        gTTGGTGAGCGACTTGCTCCAGGCGATTATCCCGTTATTTGAACTGGACAGTTATGCACCGCCGCTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCAc                                                                                               >  2:1251335/1‑140 (MQ=255)

                                         ttGGTGAGCGACTTGCTCCAGGCGATTATCCCGTTATTTGAACTGGACAGTTATGCACCGCCGCTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACt                                                                                              >  2:922364/1‑140 (MQ=255)

                                           ggTGAGCGACTTGCTCCAGGCGATTATCCCGTTATTTGAACTGGACAGTTATGCACCGCCGCTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTAc                                                                                            <  1:90905/140‑1 (MQ=255)

                                            gTGAGCGACTTGCTCCAGGCGATTATCCCGTTATTTGAACTGGACAGTTATGCACCGCCGCTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACa                                                                                           <  2:1312973/140‑1 (MQ=255)

                                              gAGCGACTTGCTCCAGGCGATTATCCCGTTATTTGAACTGGACAGTTATGCACCGCCGCTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAAg                                                                                         >  2:21074/1‑140 (MQ=255)

                                               aGCGACTTGCTCCAGGCGATTATCCCGTTATTTGAACTGGACAGTTATGCACCGCCGCTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAAGc                                                                                        >  1:1425779/1‑140 (MQ=255)

                                               aGCGACTTGCTCCAGGCGATTATCCCGTTATTTGAACTGGACAGTTATGCACCGCCGCTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAAGc                                                                                        >  2:1022067/1‑140 (MQ=255)

                                                 cGACTTGCTCCAGGCGATTATCCCGTTATTTGAACTGGACAGTTATGCACCGCCGCTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAAGccc                                                                                      >  2:61927/1‑140 (MQ=255)

                                                  gatttGCTCCAGGCGATTATCCCGTTATTTAAATTGGCCATTTATGCACCGCCGCTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAAGcccc                                                                                     <  2:1171606/137‑1 (MQ=255)

                                                  gACTTGCTCCAGGCGATTATCCCGTTATTTGAACTGGACAGTTATGCACCGCCGCTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAAGcccc                                                                                     <  2:998670/140‑1 (MQ=255)

                                                  gACTTGCTCCAGGCGATTATCCCGTTATTTGAACTGGACAGTTATGCACCGCCGCTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTGCACTACAAGcccc                                                                                     <  1:100125/140‑1 (MQ=255)

                                                   aCTTGCTCCAGGCGATTATCCCGTTATTTGAACTGGACAGTTATGCACCGCCGCTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAAGCCCCg                                                                                    >  2:415253/1‑140 (MQ=255)

                                                   aCTTGCTCCAGGCGATTATCCCGTTATTTGAACTGGACAGTTATGCACCGCCGCTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAAGCCCCg                                                                                    >  1:125331/1‑140 (MQ=255)

                                                   aCTTGCTCCAGGCGATTATCCCGTTATTTGAACTGGACAGTTATGCACCGCCGCTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATACGCTTTCCCTACAAAcccct                                                                                    >  2:907056/1‑139 (MQ=255)

                                                       gCTCCAGGCGATTATCCCGTTATTTGAACTGGACAGTTATGCACCGCCGCTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAAGCCCCGTGTc                                                                                <  2:1480835/140‑1 (MQ=255)

                                                        cTCCAGGCGATTATCCCGTTATTTGAACTGGACAGTTATGCACCGCCGCTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAAGCCCCGTGTcc                                                                               <  2:890625/140‑1 (MQ=255)

                                                                 aTTATCCCGTTATTTGAACTGGACAGTTATGCACCGCCGCTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAAGCCCCGTGTCCTGAcatcat                                                                      <  1:1361544/140‑1 (MQ=255)

                                                                   tATCCCGTTATTTGAACTGGACAGTTATGCACCGCCGCTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAAGCCCCGTGTCCTGACATCATcc                                                                    >  1:781486/1‑140 (MQ=255)

                                                                            aTTTGAACTGGACAGTTATGCACCGCCGCTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAAGCCCCGTGTCCTGACATCATCCGCATCAATc                                                           >  2:952712/1‑140 (MQ=255)

                                                                                    tGGACAGTTATGCACCGCCGCTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAAGCCCCGTGTCCTGACATCATCCGCATCAATCGTTTTGct                                                   >  2:1133543/1‑139 (MQ=255)

                                                                                      gACAGTTATGCACCGCCGCTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAAGCCCCGTGTCCTGACATCATCCGCATCAATCGTTTTGCGtt                                                 >  2:861064/1‑140 (MQ=255)

                                                                                      gACAGTTATGCACCGCCGCTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAAGCCCCGTGTCCTGACATCATCCGCATCAATCGTTTTGCGtt                                                 >  1:1158926/1‑140 (MQ=255)

                                                                                       aCAGTTATGCACCGCCGCTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCACTTTCACTACAAGCCCCGTGTCCTGACATCATCCGCATCAATCGTTTTGCGttt                                                >  1:666753/1‑140 (MQ=255)

                                                                                                cACCGCCGCTTGTGATGATTGCGGCGTTATTAGGTGACATTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAAGCCCCGTGTCCTGACATCATCCGCATCAATCGTTTTGCGTTTTATGAACgg                                       >  1:949819/1‑140 (MQ=255)

                                                                                                cACCGCCGCTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAAGCCCCGTGTCCTGACATCATCCGCATCAATCGTTTTGCGTTTTATGAACgg                                       >  1:1293721/1‑140 (MQ=255)

                                                                                                cACCGCCGCTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAAGCCCCGTGTCCTGACATCATCCGCATCAATCGTTTTGCGTTTTATGAACgg                                       >  1:983400/1‑140 (MQ=255)

                                                                                                 aCCGCCGCTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCTTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAAGCCCCGTGTCCTGACATCATCCGCATCAATCGTTTTGCGTTTTATGAACggg                                      <  2:889035/140‑1 (MQ=255)

                                                                                                     ccgcTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAATCCCCGTGTCCTGACATCATCCGCATCAATCGTTTTGCGTTTTATGAACGGGCGCa                                  >  2:388170/1‑140 (MQ=255)

                                                                                                     ccgcTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAAGCCCCGTGTCCTGACATCATCCGCATCAATCGTTTTGCGTTTTATGAACGGGCGCa                                  >  2:520003/1‑140 (MQ=255)

                                                                                                     ccgcTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAAGCCCCGTGTCCTGACATCATCCGCATCAATCGTTTTGCGTTTTATGAACGGGCGCa                                  >  2:857052/1‑140 (MQ=255)

                                                                                                     ccgcTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAAGCCCCGTGTCCTGACATCATCCGCATCAATCGTTTTGCGTTTTATGAACGGGCGCa                                  >  2:742874/1‑140 (MQ=255)

                                                                                                     ccgcTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAAGCCCCGTGTCCTGACATCATCCGCATCAATCGTTTTGCGTTTTATGAACGGGCGCa                                  <  2:781486/140‑1 (MQ=255)

                                                                                                     ccgcTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAAGCCCCGTGTCCTGACATCATCCGCATCAATCGTTTTGCGTTTTATGAACGGGCGCa                                  >  1:1160305/1‑140 (MQ=255)

                                                                                                     ccgcTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAAGCCCCGTGTCCTGACATCATCCGCATCAATCGTTTTGCGTTTTATGAACGGGCGCa                                  >  2:148074/1‑140 (MQ=255)

                                                                                                     ccgcTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAAGCCCCGTGTCCTGACATCATCCGCATCAATCGTTTTGCGTTTTATGAACGGGCGCa                                  >  1:997005/1‑140 (MQ=255)

                                                                                                     ccgcTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAAGCCCCGTGTCCTGACATCATCCGCATCAATCGTTTTGCGTTTTATGAACGGGCGCa                                  >  1:812639/1‑140 (MQ=255)

                                                                                                     ccgcTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAAGCCCCGTGTCCTGACATCATCCGCATCAATCGTTTTGCGTTTTATGAACGGGCGCa                                  >  2:1165394/1‑140 (MQ=255)

                                                                                                     ccgcTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAAGCCCCGTGTCCTGACATCATCCGCATCAATCGTTTTGCGTTTTATGAACGGGCGCa                                  >  2:1150706/1‑140 (MQ=255)

                                                                                                     ccgcTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAAGCCCCGTGTCCTGACATCATCCGCATCAATCGTTTTGCGTTTTATGAACGGGCGCa                                  >  2:1137701/1‑140 (MQ=255)

                                                                                                     ccgcTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAAGCCCCGTGTCCTGACATCATCCGCATCAATCGTTTTGCGTTTTATGAACGGGCGCa                                  >  2:1054710/1‑140 (MQ=255)

                                                                                                     ccgcGGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAAGCCCCGTGTCCTGACATCATCCGCATCAATCGTTTTGCGTTTTATGAACGGGCGCa                                  >  1:1394361/1‑140 (MQ=255)

                                                                                                     acgcTGGGGATGATGGCGGCGGTAGAAGGTGACAGTTTCGATCCAGAAGAAGTACGAAGGGACGGTGAGGCACTTTCACTACAAGCGCCGTGTCCTGACATCAACCGCATCTATCGTTTTGCGTTTTATGAACGGGCGCa                                  >  2:1410209/2‑140 (MQ=255)

                                                                                                       gcTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAAGCCCCGTGTCCTGACATCATCCGCATCAATCGTTTTGCGTTTTATGAACGGGCGCaaa                                <  1:520003/140‑1 (MQ=255)

                                                                                                        cTGGTGATGATGGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAAGCCCCGTGTCCTGACATCATCCGCATCAATCGTTTTGCGTTTTATGAACGGGCGCaaaa                               <  2:282355/140‑1 (MQ=255)

                                                                                                                gatgGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAAGCCCCGTGTCCTGACATCATCCGCATCAATCGTTTTGCGTTTTATGAACGGGCGCAAAAAGCCTTTg                       <  2:125331/140‑1 (MQ=255)

                                                                                                                  tgGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAAGCCCCGTGTCCTGACATCATCCGCATCAATCGTTTTGCGTTTTATGAACGGGCGCAAAAAGCCTTTGCg                     <  1:61927/140‑1 (MQ=255)

                                                                                                                  tgGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAAGCCCCGTGTCCTGACATCATCCGCATCAATCGTTTTGCGTTTTATGAACGGGCGCAAAAAGCCTTTGCg                     <  2:997005/140‑1 (MQ=255)

                                                                                                                  tgGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAAGCCCCGTGTCCTGACATCATCCGCATCAATCGTTTTGCGTTTTATGAACGGGCGCAAAAAGCCTTTGCg                     <  2:1293721/140‑1 (MQ=255)

                                                                                                                  tgGCGGCGGTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAAGCCCCGTGTCCTGACATCATCCGCATCAATCGTTTTGCGTTTTATGAACGGGCGCAAAAAGCCTTTGCg                     <  1:148074/140‑1 (MQ=255)

                                                                                                                     cggcggTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAAGCCCCGTGTCCTGACATCATCCGCATCAATCGTTTTGCGTTTTATGAACGGGCGCAAAAAGCCTTTGCGATc                  >  2:257668/1‑140 (MQ=255)

                                                                                                                     cggcggTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAAGCCCCGTGTCCTGACATCATCCGCATCAATCGTTTTGCGTTTTATGAACGGGCGCAAAAAGCCTTTGCGATc                  >  2:647633/1‑140 (MQ=255)

                                                                                                                     cggcggTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAAGCCCCGTGTCCTGACATCATCCGCATCAATCGTTTTGCGTTTTATGAACGGGCGCAAAAAGCCTTTGCGATc                  <  1:1165394/140‑1 (MQ=255)

                                                                                                                     cggcggTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAAGCCCCGTGTCCTGACATCATCCGCATCAATCGTTTTGCGTTTTATGAACGGGCGCAAAAAGCCTTTGCGATc                  >  2:262771/1‑140 (MQ=255)

                                                                                                                     cggcggTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAAGCCCCGTGTCCTGACATCATCCGCATCAATCGTTTTGCGTTTTATGAACGGGCGCAAAAAGCCTTTGCGATc                  <  1:952712/140‑1 (MQ=255)

                                                                                                                        cggTAGAAGGTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAAGCCCCGTGTCCTGACATCATCCGCATCAATCGTTTTGCGTTTTATGAACGGGCGCAAAAAGCCTTTGCGATCGtt               >  1:1394076/1‑140 (MQ=255)

                                                                                                                                ggTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAAGCCCCGTGTCCTGACATCATCCGCATCAATCGTTTTGCGTTTTATGAACGGGCGCAAAAAGCCTTTGCGATCGTTATCACAgg       >  1:1313993/1‑140 (MQ=255)

                                                                                                                                ggTGACACTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAAGCCCCGTGTCCTGACATCATCCGCATCAATCGTTTTGCGTTTTATGAACGGGCGCAAAAAGCCTTTGCGATCGTTATCACAgg       <  1:907056/140‑1 (MQ=255)

                                                                                                                                     cacTTTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAAGCCCCGTGTCCTGACATCATCCGCATCAATCGTTTTGCGTTTTATGAACGGGCGCAAAAAGCCTTTGCGATCGTTATCACAGGCGAAc  >  2:1228765/1‑140 (MQ=255)

CCCATTCGATGGGACCGCAGGTGATCCGCGCTGATGGCCTGTTGGTGAGCGACTTGCTCCAGGCGATTATCCCGTTATTTGAACTGGACAGTTATGCACCGCCGCTGGTGATGATGGCGGCGGTAGAAGGTGACACTCTCGATCCTGAAGTAGAACGACGTTACCGTAATGCGCTTTCACTACAAGCCCCGTGTCCTGACATCATCCGCATCAATCGTTTTGCGTTTTATGAACGGGCGCAAAAAGCCTTTGCGATCGTTATCACAGGCGAAC  >  NC_000913/2938991‑2939263

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A