Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F48 I1 R1 55 131.7 4456318 99.2% 4420667 139.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,940,438 C→A S269I (AGC→ATC)  rlmM ← 23S rRNA 2'‑O‑ribose C2498 methyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,940,4380CA100.0% 362.3 / NA 104S269I (AGC→ATC) rlmM23S rRNA 2'‑O‑ribose C2498 methyltransferase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (56/48);  total (56/48)

Only 100 of 111 total aligned reads displayed.

CTTCGTAGCGTTTTTTCATCGGCAGTTTGAGGTTGAAAATGGTTTCACGGCACCAGCCATTAACCAGCCACTGCGCCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGCTGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCATCGGGCCGTTGTCGACGGAATAAACCCACATGTTGCGCTTCACCAGTTGGTAGGTCCAGC  >  NC_000913/2940301‑2940573
                                                                                                                                         |                                                                                                                                       
cttcGTAGCGTTTTTTCATCGGCAGTTTGAGGTTGAAAATGGTTTCACGGCACCAGCCATTAACCAGCCACTGCGCCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATtgatg                                                                                                                                       >  1:1127516/1‑140 (MQ=255)
cttcGTAGCGTTTTTTCATCGGCAGTTTGAGGTTGAAAATGGTTTCACGGCACCAGCCATTAACCAGCCACTGCGCCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATtgatg                                                                                                                                       >  1:832269/1‑140 (MQ=255)
cttcGTAGCGTTTTTTCATCGGCAGTTTGAGGTTGAAAATGGTTTCACGGCACCAGCCATTAACCAGCCACTGCGCCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATtgatg                                                                                                                                       >  1:746853/1‑140 (MQ=255)
cttcGTAGCGTTTTTTCATCGGCAGTTTGAGGTTGAAAATGGTTTCACGGCACCAGCCATTAACCAGCCACTGCGCCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATtgatg                                                                                                                                       >  1:1494364/1‑140 (MQ=255)
cttcGTAGCGTTTTTTCATCGGCAGTTTGAGGTTGAAAATGGTTTCACGGCACCAGCCATTAACCAGCCACTGCGCCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATtgatg                                                                                                                                       >  1:262542/1‑140 (MQ=255)
      aGCGTTTTTTCATCGGCAGTTTGAGGTTGAAAATGGTTTCACGGCACCAGCCATTAACCAGCCACTGCGCCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGt                                                                                                                                  >  2:1294457/1‑139 (MQ=255)
      aGCGTTTTTTCATCGGCAGTTTGAGGTTGAAAATGGTTTCACGGCACCAGCCATTAACCAGCCACTGCGCCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGt                                                                                                                                  <  1:1294457/139‑1 (MQ=255)
        cGTTTTTTCATCGGCAGTTTGAGGTTGAAAATGGTTTCACGGCACCAGCCATTAACCAGCCACTGCGCCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTcgg                                                                                                                               >  2:1605105/1‑140 (MQ=255)
        cGTTTTTTCATCGGCAGTTTGAGGTTGAAAATGGTTTCACGGCACCAGCCATTAACCAGCCACTGCGCCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTcgg                                                                                                                               >  2:1126481/1‑140 (MQ=255)
         gTTTTTTCATCGGCAGTTTGAGGTTGAAAATGGTTTCACGGCACCAGCCATTAACCAGCCACTGCGCCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTcgga                                                                                                                              <  1:1142744/140‑1 (MQ=255)
          ttttttCATCGGCAGTTTGAGGTTGAAAATGGTTTCACGGCACCAGCCATTAACCAGCCACTGCGCCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTcggac                                                                                                                             >  2:1817397/1‑140 (MQ=255)
           tttttCATCGGCAGTTTGAGGTTGAAAATGGTTTCACGGCCCCAGCCATTAACCAGCCACTGCGCCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTcggacg                                                                                                                            <  2:832269/140‑1 (MQ=255)
             tttCATCGGCAGTTTGAGGTTGAAAATGGTTTCACGGCCCCAGCCATTAACCAGCCACTGCGCCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTcggacgga                                                                                                                          <  1:1189428/140‑1 (MQ=255)
             tttCATCGGCAGTTTGAGGTTGAAAATGGTTTCACGGCACCAGCCATTAACCAGCCACTGCGCCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTcggacgga                                                                                                                          >  2:59882/1‑140 (MQ=255)
                  tCGGCAGTTTGAGGTTGAAAATGGTTTCACGGCACCAGCCATTAACCAGCCACTGCGCCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTg                                                                                                                     <  1:875686/140‑1 (MQ=255)
                   cGGCAGTTTGAGGTTGAAAATGGTTTCACGGCACCAGCCATTAACCAGCCACTGCGCCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGa                                                                                                                    <  1:24483/140‑1 (MQ=255)
                      aatttggAGGTAAAAATTGTTTCCACGCCCCCAGCCATAACCCAGCCACTGCGCCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAAc                                                                                                                 <  2:892165/134‑1 (MQ=255)
                           tGAGGTTGAAAATGGTTTCACGGCACCAGCCATTAACCAGCCACTGCGCCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCt                                                                                                            <  2:746853/140‑1 (MQ=255)
                                 tGAAAATGGTTTCACGGCACCAGCCATTAACCAGCCACTGCGCCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGc                                                                                                      <  1:59882/140‑1 (MQ=255)
                                  gAAAATGGTTTCACGGCACCAGCCATTAACCAGCCACTGCGCCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCa                                                                                                     <  1:1274598/140‑1 (MQ=255)
                                    aaaTGGTTTCACGGCACCAGCCATTAACCAGCCACTGCGCCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGc                                                                                                   <  1:1260559/140‑1 (MQ=255)
                                      aTGGTTTCACGGCACCAGCCATTAACCAGCCACTGCGCCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCa                                                                                                 <  2:1638114/140‑1 (MQ=255)
                                      aTGGTTTCACGGCACCAGCCATTAACCAGCCACTGCGCCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCa                                                                                                 <  1:1448709/140‑1 (MQ=255)
                                         gTTTCACGGCACCAGCCATTAACCAGCCACTGCGCCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATGTCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGt                                                                                              <  1:1605105/140‑1 (MQ=255)
                                         gTTTCACGGCACCAGCCATTAACCAGCCACTGCGCCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGt                                                                                              >  1:1578842/1‑140 (MQ=255)
                                          tttCACGGCACCAGCCATTAACCAGCCACTGCGCCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTc                                                                                             >  2:1640267/1‑140 (MQ=255)
                                          tttCACGGCACCAGCCATTAACCAGCCACTGCGCCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTc                                                                                             >  2:1114773/1‑140 (MQ=255)
                                            tCACGGCACCAGCCATTAACCAGCCACTGCGCCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGACACCGTCTTCCCGCAGCCACGTCAc                                                                                           <  1:1973789/140‑1 (MQ=255)
                                            tCACGGCACCAGCCATTAACCAGCCACTGCGCCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCAc                                                                                           <  2:6105/140‑1 (MQ=255)
                                             cACGGCACCAGCCATTAACCAGCCACTGCGCCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCAcc                                                                                          <  1:298904/140‑1 (MQ=255)
                                             cACGGCACCAGCCATTAACCAGCCACTGCGCCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTACCCGCAGCCACGTCAcc                                                                                          <  1:879086/140‑1 (MQ=255)
                                              aCGGCACCAGCCATTAACCAGCCACTGCGCCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCt                                                                                         <  2:262542/140‑1 (MQ=255)
                                                 gCACCAGCCATTAACCAGCCACTGCGCCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTc                                                                                      <  1:1916586/140‑1 (MQ=255)
                                                     cAGCCATTAACCAGCCACTGCGCCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGt                                                                                  >  1:1581358/1‑140 (MQ=255)
                                                     cAGCCATTAACCAGCCACTGCGCCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGt                                                                                  <  1:1817397/140‑1 (MQ=255)
                                                            tAACCAGCCACTGCGCCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCAGCTGTCCGGTATCCATc                                                                           >  2:1764128/1‑140 (MQ=255)
                                                             aaCCAGCCACTGCGCCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCa                                                                          >  2:1605747/1‑140 (MQ=255)
                                                                 aGCCACTGCGCCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACt                                                                      >  2:1042219/1‑140 (MQ=255)
                                                                  gCCACTGCGCCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACtt                                                                     >  2:451431/1‑140 (MQ=255)
                                                                  gCCACTGCGCCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACtt                                                                     >  1:175650/1‑140 (MQ=255)
                                                                  gCCACTGCGCCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACtt                                                                     >  2:386964/1‑140 (MQ=255)
                                                                  gCCACTGCGCCATCAATGCCGCAACTTTCACCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGt                                                                                  >  2:205350/1‑127 (MQ=255)
                                                                   ccACTGCGCCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCTAGTAGATATTTATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACttt                                                                    >  2:1482150/1‑140 (MQ=255)
                                                                   ccACTGCGCCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACttt                                                                    >  1:1593124/1‑140 (MQ=255)
                                                                   ccACTGCGCCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACttt                                                                    >  1:12051/1‑140 (MQ=255)
                                                                   ccACTGCGCCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACttt                                                                    >  1:540182/1‑140 (MQ=255)
                                                                    cACTGCGCCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTg                                                                   >  1:633041/1‑140 (MQ=255)
                                                                       tGCGCCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTgcgc                                                                >  2:928490/1‑140 (MQ=255)
                                                                       tGCGCCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTgcgc                                                                >  2:1905079/1‑140 (MQ=255)
                                                                        gcgcCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGcc                                                               >  2:732391/1‑140 (MQ=255)
                                                                         cgcCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCa                                                              >  2:2015138/1‑140 (MQ=255)
                                                                              tCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCATCggg                                                         >  1:1785840/1‑140 (MQ=255)
                                                                              tCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCATCggg                                                         <  1:1905079/140‑1 (MQ=255)
                                                                                   gCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCATCGGGCCGtt                                                    >  2:1512052/1‑140 (MQ=255)
                                                                                    ccGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCATCGGGCCGTTg                                                   <  1:1042219/140‑1 (MQ=255)
                                                                                     cGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCATCGGGCCGTTGt                                                  <  2:319142/140‑1 (MQ=255)
                                                                                        aaCTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAATCCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCATCGGGCCGTTGTCGa                                               <  2:1734179/140‑1 (MQ=255)
                                                                                        aaCTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCCTCGGGCCGTTGTCGa                                               <  2:2029569/140‑1 (MQ=255)
                                                                                        aaCTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCATCGGGCCGTTGTCGa                                               <  2:1494364/140‑1 (MQ=255)
                                                                                        aaCTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCATCGGGCCGTTGTCGa                                               <  2:1893577/140‑1 (MQ=255)
                                                                                        aaCTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCATCGGGCCGTTGTCGa                                               <  2:1150611/140‑1 (MQ=255)
                                                                                        aaCTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCATCGGGCCGTTGTCGa                                               >  1:512387/1‑140 (MQ=255)
                                                                                         aCTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCATCGGGCCGTTGTCGAc                                              <  2:540182/140‑1 (MQ=255)
                                                                                             tCGCCGGTTTTTCAACCATATCGCATACTATCCCGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCATCGGGCCGTTGTCGACGGaa                                          <  2:2080439/140‑1 (MQ=255)
                                                                                              cGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCATCGGGCCGTTGTCGACGGAAt                                         <  1:1114773/140‑1 (MQ=255)
                                                                                              cGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCATCGGGCCGTTGTCGACGGAAt                                         <  1:1640267/140‑1 (MQ=255)
                                                                                                    tttttCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCATCGGGCCGTTGTCGACGGAATAAAccc                                   <  2:1581358/140‑1 (MQ=255)
                                                                                                    tttttCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCATCGGGCCGTTGTCGACGGAATAAAccc                                   >  2:1650705/1‑140 (MQ=255)
                                                                                                    tttttCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCATCGGGCCGTTGTCGACGGAATAAAccc                                   >  1:258766/1‑140 (MQ=255)
                                                                                                      tttCAACCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCATCGGGCCGTTGTCGACGGAATAAACCcac                                 <  1:928490/140‑1 (MQ=255)
                                                                                                           aCCATATCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCATCGGGCCGTTGTCGACGGAATAAACCCACATGtt                            <  2:258766/140‑1 (MQ=255)
                                                                                                                atCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCATCGGGCCGTTGTCGACGGAATAAACCCACATGTTGCGCt                       >  1:1499504/1‑140 (MQ=255)
                                                                                                                atCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCATCGGGCCGTTGTCGACGGAATAAACCCACATGTTGCGCt                       >  2:767045/1‑140 (MQ=255)
                                                                                                                atCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCATCGGGCCGTTGTCGACGGAATAAACCCACATGTTGCGCt                       >  2:43400/1‑140 (MQ=255)
                                                                                                                 tCGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCATCGGGCCGTTGTCGACGGAATAAACCCACATGTTGCGCtt                      <  1:1605747/140‑1 (MQ=255)
                                                                                                                  cGCATACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCATCGGGCCGTTGTCGACGGAATAAACCCACATGTTgcg                         <  2:1381870/136‑1 (MQ=255)
                                                                                                                     aTACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCATCGGGCCGTTGTCGACGGAATAAACCCACATGTTGCGCTTCAcc                  <  1:732391/140‑1 (MQ=255)
                                                                                                                      tACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCATCGGGCCGTTGTCGACGGAATAAAccc                                   >  1:235560/1‑122 (MQ=255)
                                                                                                                      tACCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCATCGGGCCGTTGTCGACGGAATAAAccc                                   <  2:235560/122‑1 (MQ=255)
                                                                                                                      tACCATCCAGGAGATATTGATGCGCGTAGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCATCGGGCCGTTGTCGACGGAATAAACCCACATGTTGCGCTTCACCa                 >  2:1114433/1‑140 (MQ=255)
                                                                                                                       aCCATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCATCGGGCCGTTGTCGACGGAATAAACCCACATGTTGCGCTTCACCAg                >  2:471981/1‑140 (MQ=255)
                                                                                                                         cATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCATCGGGCCGTTGTCGACGGAATAAACCCACATGTTGCGCTTCACCAGtt              >  1:1427673/1‑140 (MQ=255)
                                                                                                                         cATCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCATCGGGCCGTTGTCGACGGAATAAACCCACATGTTGCGCTTCACCAGtt              >  2:246960/1‑140 (MQ=255)
                                                                                                                          aTCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCATCGGGCCGTTGTCGACGGAATAAACCCACATGTTGCGCTTCACCAGTTg             >  1:2170630/1‑140 (MQ=255)
                                                                                                                          aTCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCATCGGGCCGTTGTCGACGGAATAAACCCACATGTTGCGCTTCACCAGTTg             >  2:1885067/1‑140 (MQ=255)
                                                                                                                           tCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCATCGGGCCGTTGTCGACGGAATAAACCCACATGTTGCGCTTCACCAGTTgt            >  2:1721087/1‑139 (MQ=255)
                                                                                                                           tCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCATCGGGCCGTTGTCGACGGAATAAACCCACATGTTGCGCTTCACCAGTTgt            >  2:675951/1‑139 (MQ=255)
                                                                                                                           tCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCATCGGGCCGTTGTCGACGGAATAAACCCACATGTTGCGCTTCACCAGTTgg            >  1:639311/1‑140 (MQ=255)
                                                                                                                           tCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCATCGGGCCGTTGTCGACGGAATAAACCCACATGTTGCGCTTCACCAGTTgg            >  2:1337504/1‑140 (MQ=255)
                                                                                                                           tCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCATCGGGCCGTTGTCGACGGAATAAACCCACATGTTGCGCTTCACCAGTTgg            >  1:2126246/1‑140 (MQ=255)
                                                                                                                           tCCAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCATCGGGCCGTTGTCGACGGAATAAACCCACATGTTGCGCTTCACCAGTTgg            >  2:1159966/1‑140 (MQ=255)
                                                                                                                            ccAGGAGATATTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCATCGGGCCGTTGTCGACGGAATAAACCCACATGTTGCGCTTCACCAGTTGGt           >  2:126471/1‑140 (MQ=255)
                                                                                                                                   atatTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCATCGGGCCGTTGTCGACGGAATAAACCCACATGTTGCGCTTCACCAGTTGGTAGGTCCa    <  1:1913715/140‑1 (MQ=255)
                                                                                                                                   atatTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCATCGGGCCGTTGTCGACGGAATAAACCCACATGTTGCGCTTCACCAGTTGGTAGGTCCa    <  1:1340920/140‑1 (MQ=255)
                                                                                                                                   atatTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCATCGGGCCGTTGTCGACGGAATAAACCCACATGTTGCGCTTCACCAGTTGGTAGGTCCa    >  1:310650/1‑140 (MQ=255)
                                                                                                                                   atatTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCATCGGGCCGTTGTCGACGGAATAAACCCACATGTTGCGCTTCACCAGTTGGTAGGTCCa    <  1:43400/140‑1 (MQ=255)
                                                                                                                                    aatTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCATCGGGCCGTTGTCGACGGAATAAACCCACATGTTGCGCTTCACCAGTTGGTAGGTCCAg   <  2:1127516/139‑1 (MQ=255)
                                                                                                                                     atTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCATCGGGCCGTTGTCGACGGAATAAACCCACATGTTGCGCTTCACCAGTTGGTAGGTCCAgt  >  1:1910370/1‑139 (MQ=255)
                                                                                                                                     atTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCATCGGGCCGTTGTCGACGGAATAAACCCACATGTTGCGCTTCACCAGTTGGTAGGTCCAgc  >  2:1067627/1‑140 (MQ=255)
                                                                                                                                     atTGATGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCATCGGGCCGTTGTCGACGGAATAAACCCACATGTTGCGCTTCACCAGTTGGTAGGTCCAgc  >  1:230218/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                       
CTTCGTAGCGTTTTTTCATCGGCAGTTTGAGGTTGAAAATGGTTTCACGGCACCAGCCATTAACCAGCCACTGCGCCATCAATGCCGCAACTTTCGCCGGTTTTTCAACCATATCGCATACCATCCAGGAGATATTGCTGCGCGTCGGACGGAATTTGAAACCGTCTTCCCGCAGCCACGTCACCTGTCCGGTATCCATCAGACTTTGCGCCATCGGGCCGTTGTCGACGGAATAAACCCACATGTTGCGCTTCACCAGTTGGTAGGTCCAGC  >  NC_000913/2940301‑2940573

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A