Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A15 F48 I1 R1 115 87.5 3003888 99.1% 2976853 139.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,379,824 C→A K58N (AAG→AAT)  zapE ← cell division factor ZapE with ATPase activity

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,379,8240CA100.0% 285.5 / NA 81K58N (AAG→AAT) zapEcell division factor ZapE with ATPase activity
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (52/29);  total (52/29)

GGCGCTGTTTCCGCTCTCCCGGCAGGCTTTGATAGAAAAGGTCCATCAGCCAGGTTTTCCCGCGTCCTACACCGCCCCACATATATAAGCCACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGCTTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATTGATGAGTTCCTGATAAATAATTTCCAGGCGGCTGACGGCCTCTTTTTGAACGTCGTCGGGTTGATGGCTGCCTTCATTAAGCG  >  NC_000913/3379691‑3379960
                                                                                                                                     |                                                                                                                                        
ggCGCTGTTTCCGCTCTCCCGGCAGGCTTTGATAGAAAAGGTCCATCAGCCAGGTTTTCCCGCGTCCTACACCGCCCCACATATATAAGCCACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCg                                                                                                                                    >  1:1384558/1‑140 (MQ=255)
ggCGCTGTTTCCGCTCTCCCGGCAGGCTTTGATAGAAAAGGTCCATCAGCCAGGTTTTCCCGCGTCCTACACCGCCCCACATATATAAGCCACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCg                                                                                                                                    >  1:868870/1‑140 (MQ=255)
     tGTTTCCGCTCTCCCGGCAGGCTTTGATAGAAAAGGTCCATCAGCCAGGTTTTCCCGCGTCCTACACCGCCCCACATATATAAGCCACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCcg                                                                                                                               <  1:573750/140‑1 (MQ=255)
     tGTTTCCGCTCTCCCGGCAGGCTTTGATAGAAAAGGTCCATCAGCCAGGTTTTCCCGCGTCCTACACCGCCCCACATATATAAGCCACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCcg                                                                                                                               <  1:301150/140‑1 (MQ=255)
     tGTTTCCGCTCTCCCGGCAGGCTTTGATAGAAAAGGTCCATCAGCCAGGTTTTCCCGCGTCCTACACCGCCCCACATATATAAGCCACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCcg                                                                                                                               <  2:78522/140‑1 (MQ=255)
           cGCTCTCCCGGCAGGCTTTGATAGAAAAGGTCCATCAGCCAGGTTTTCCCGCGTCCTACACCGCCCCACATATATAAGCCACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCAt                                                                                                                         >  1:1233799/1‑140 (MQ=255)
           cGCTCTCCCGGCAGGCTTTGATAGAAAAGGTCCATCAGCCAGGTTTTCCCGCGTCCTACACCGCCCCACATATATAAGCCACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCAt                                                                                                                         >  1:1392586/1‑140 (MQ=255)
               ctcCCGGCAGGCTTTGATAGAAAAGGTCCATCAGCCAGGTTTTCCCGCGTCCTACACCGCCCCACATATATAAGCCACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGc                                                                                                                     >  1:1058269/1‑140 (MQ=255)
                 cccGGCAGGCTTTGATAGAAAAGGTCCATCAGCCAGGTTTTCCCGCGTCCTACACCGCCCCACATATATAAGCCACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGccc                                                                                                                   >  2:643722/1‑140 (MQ=255)
                 cccGGCAGGCTTTGATAGAAAAGGTCCATCAGCCAGGTTTTCCCGCGTCCTACACCGCCCCACATATATAAGCCACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGccc                                                                                                                   >  2:787162/1‑140 (MQ=255)
                    ggCAGGCTTTGATAGAAAAGGTCCATCAGCCAGGTTTTCCCGCGTCCTACACCGCCCCACATATATAAGCCACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACt                                                                                                                <  1:27529/140‑1 (MQ=255)
                    ggCAGGCTTTGATAGAAAAGGTCCATCAGCCAGGTTTTCCCGCGTCCTACACCGCCCCACATATATAAGCCACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACt                                                                                                                <  2:342688/140‑1 (MQ=255)
                          cTTTGATAGAAAAGGTCCATCAGCCAGGTTTTCCCGCGTCCTACACCGCCCCACATATATAAGCCACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCt                                                                                                          >  2:488100/1‑140 (MQ=255)
                           tttGATAGAAAAGGTCCATCAGCCAGGTTTTCCCGCGTCCTACACCGCCCCACATATATAAGCCACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTg                                                                                                         <  2:1020295/140‑1 (MQ=255)
                            ttGATAGAAAAGGTCCATCAGCCAGGTTTTCCCGCGTCCTACACCGCCCCACATATATAAGCCACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTgg                                                                                                        >  2:699677/1‑140 (MQ=255)
                                   aaaaGGTCCATCAGCCAGGTTTTCCCGCGTCCTACACCGCCCCACATATATAAGCCACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCtgg                                                                                                 <  2:853212/140‑1 (MQ=255)
                                        gTCCATCAGCCAGGTTTTCCCGCGTCCTACACCGCCCCACATATATAAGCCACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCg                                                                                            >  2:621114/1‑140 (MQ=255)
                                        gTCCATCAGCCAGGTTTTCCCGCGTCCTACACCGCCCCACATATATAAGCCACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCg                                                                                            <  2:868870/140‑1 (MQ=255)
                                        gTCCATCAGCCAGGTTTTCCCGCGTCCTACACCGCCCCACATATATAAGCCACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCg                                                                                            <  1:661741/140‑1 (MQ=255)
                                        gTCCATCAGCCAGGTTTTCCCGCGTCCTACACCGCCCCACATATATAAGCCACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCg                                                                                            <  2:832207/140‑1 (MQ=255)
                                        gTCCATCAGCCAGGTTTTCCCGCGTCCTACACCGCCCCACATATATAAGCCACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCg                                                                                            <  1:1381355/140‑1 (MQ=255)
                                        gTCCATCAGCCAGGTTTTCCCGCGTCCTACACCGCCCCACATATATAAGCCACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATAACCGACCCGCGCCATTAGCCCACGCGTCCTGGGGGCTGGTGGCg                                                                                            <  2:872491/140‑1 (MQ=255)
                                          ccATCAGCCAGGTTTTCCCGCGTCCTACACCGCCCCACATATATAAGCCACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTg                                                                                          <  2:1269712/140‑1 (MQ=255)
                                          ccATCAGCCAGGTTTTCCCGCGTCCTACACCGCCCCACATATATAAGCCACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTg                                                                                          <  1:621114/140‑1 (MQ=255)
                                             tCAGCCAGGTTTTCCCGCGTCCTACACCGCCCCACATATATAAGCCACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTa                                                                                       >  1:579755/1‑140 (MQ=255)
                                             tCAGCCAGGTTTTCCCGCGTCCTACACCGCCCCACATATATAAGCCACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCCGGGGGCTGGTGGCGTGCtt                                                                                       >  1:30329/1‑139 (MQ=255)
                                              cAGCCAGGTTTTCCCGCGTCCTACACCGCCCCACATATATAAGCCACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTAt                                                                                      <  1:307796/140‑1 (MQ=255)
                                                  cAGGTTTTCCCGCGTCCTACACCGCCCCACATATATAAGCCACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATtgat                                                                                  <  1:787162/140‑1 (MQ=255)
                                                  cAGGTTTTCCCGCGTCCTACACCGCCCCACATATATAAGCCACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATtgat                                                                                  <  2:1058269/140‑1 (MQ=255)
                                                         tCCCGCGTCCTACACCGCCCCACATATATAAGCCACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATTGATGAGTTcc                                                                           >  2:1379673/1‑140 (MQ=255)
                                                          cccGCGTCCTACACCGCCCCACATATATAAGCCACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATTGATGAGTTCCt                                                                          >  2:821108/1‑140 (MQ=255)
                                                           ccGCGTCCTACACCGCCCCACATATATAAGCCACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATTGATGAGTTCCTg                                                                         >  1:850285/1‑140 (MQ=255)
                                                                         gCCCCACATATATAAGCCACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATTGATGAGTTCCTGATAAATAATTTCCa                                                           >  1:335557/1‑140 (MQ=255)
                                                                          ccccACATATATAAGCCACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGTGCTGGTGGCGTGCTATTGATGAGTTCCTGATAAATAATTTCCAg                                                          >  2:1022849/1‑140 (MQ=255)
                                                                          ccccACATATATAAGCCACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATTGATGAGTTCCTGATAAATAATTTCCAg                                                          >  2:554001/1‑140 (MQ=255)
                                                                          ccccACATATATAAGCCACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATTGATGAGTTCCTGATAAATAATTTCCAg                                                          >  1:854396/1‑140 (MQ=255)
                                                                          ccccACATATATAAGCCACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATTGATGAGTTCCTGATAAATAATTTCCAg                                                          >  1:1122396/1‑140 (MQ=255)
                                                                           cccACATATATAAGCCACGCACTGTCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATTGATGAGTTCCTGATAAATAATTTCCAgg                                                         >  2:396436/1‑140 (MQ=255)
                                                                           cccACATATATAAGCCACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATTGATGAGTTCCTGATAAATAATTTCCAgg                                                         >  1:594583/1‑140 (MQ=255)
                                                                           cccACATATATAAGCCACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATTGATGAGTTCCTGATAAATAATTTCCAgg                                                         >  1:756914/1‑140 (MQ=255)
                                                                                  atataAGCCACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATTGATGAGTTCCTGATAAATAATTTCCAGGCGGCTGa                                                  <  1:643722/140‑1 (MQ=255)
                                                                                  atataAGCCACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATTGATGAGTTCCTGATAAATAATTTCCAGGCGGCTGa                                                  <  2:854396/140‑1 (MQ=255)
                                                                                      aaGCCACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATTGATGAGTTCCTGATAAATAATTTCCAGGCGGCTGACGGc                                              <  1:989085/140‑1 (MQ=255)
                                                                                       aGCCACGCACTGGCTTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATTGATGAGTTCCTGATAAATAATTTCCAGGCGGCTGACGGcc                                             <  1:554001/140‑1 (MQ=255)
                                                                                       aGCCACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATTGATGAGTTCCTGATAAATAATTTCCAGGCGGCTGACg                                                <  1:160000/137‑1 (MQ=255)
                                                                                       aGCCACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATTGATGAGTTCCTGATAAATAATTTCCAGGCGGCTGACg                                                >  2:160000/1‑137 (MQ=255)
                                                                                       aGCCACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATTGATGAGTTCCTGATAAATAATTTCCAGGCGGCTGACGGcc                                             <  1:699677/140‑1 (MQ=255)
                                                                                       aGCCACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATTGATGAGTTCCTGATAAATAATTTCCAGGCGGCTGACGGcc                                             >  2:938415/1‑140 (MQ=255)
                                                                                        gCCACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATTGATGAGTTCCTGATAAATAATTTCCAGGCGGCTGACGGCct                                            >  1:1499557/1‑140 (MQ=255)
                                                                                        gCCACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATTGATGAGTTCCTGATAAATAATTTCCAGGCGGCTGACGGCct                                            >  1:813058/1‑140 (MQ=255)
                                                                                          cACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCGCTCGTCCTGGGGGCTGGTGGCGTGCTATTGATGAGTTCCTGATAAATAATTTCCAGGCGGCTGACGGCctct                                          >  2:403494/1‑140 (MQ=255)
                                                                                          cACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATTGATGAGTTCCTGATAAATAATTTCCAGGCGGCTGACGGCctct                                          >  2:715961/1‑140 (MQ=255)
                                                                                           aCGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATTGATGAGTTCCTGATAAATAATTTCCAGGCGGCTGACGGCCTCtt                                         >  2:434195/1‑140 (MQ=255)
                                                                                            cGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATTGCTGAGTTCCTGATGAATAATTTCCAGGCGTTTGACGGCCTCttt                                        >  2:1402006/1‑140 (MQ=255)
                                                                                            cGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATTGATGAGTTCCTGATAAATAATTTCCAGGCGGCTGACGGCCTCttt                                        >  2:1431650/1‑140 (MQ=255)
                                                                                            cGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATTGATGAGTTCCTGATAAATAATTTCCAGGCGGCTGACGGCCTCttt                                        >  2:410688/1‑140 (MQ=255)
                                                                                            cGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATTGATGAGTTCCTGATAAATAATTTCCAGGCGGCTGACGGCCTCttt                                        >  1:1206895/1‑140 (MQ=255)
                                                                                            cGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATTGATGAGTTCCTGATAAATAATTTCCAGGCGGCTGACGGCCTCttt                                        >  2:867967/1‑140 (MQ=255)
                                                                                            cGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATTGATGAGTTCCTGATAAATAATTTCCAGGCGGCTGACGGCCTCttt                                        >  2:530447/1‑140 (MQ=255)
                                                                                            cGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATTGATGAGTTCCTGATAAATAATTTCCAGGCGGCTGACGGCCTCttt                                        >  1:421922/1‑140 (MQ=255)
                                                                                            cGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATTGATGAGTTCCTGATAAATAATTTCCAGGCGGCTGACGGCCTCttt                                        >  1:717633/1‑140 (MQ=255)
                                                                                            cGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATTGATGAGTTCCTGATAAATAATTTCCAGGCGGCTGACGGCCTCttt                                        >  2:754024/1‑140 (MQ=255)
                                                                                            cGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATTGATGAGTTCCTGATAAATAATTTCCAGGCGGCTGACGGCCTCttt                                        >  1:388118/1‑140 (MQ=255)
                                                                                            cGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATTGATGAGTTCCTGATAAATAATTTCCAGGCGGCTGACGGCCTCttt                                        >  2:331732/1‑140 (MQ=255)
                                                                                             gCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATTGATGAGTTCCTGATAAATAATTTCCAGGCGGCTGACGGCCTCtttt                                       >  1:210244/1‑140 (MQ=255)
                                                                                                      tATGCTTTGTGTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATTGATGAGTTCCTGATAAATAATTTCCAGGCGGCTGACGGCCTCTTTTTGAAcgtcg                              >  1:1023255/1‑140 (MQ=255)
                                                                                                             tgtgTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATTGATGAGTTCCTGATAAATAATTTCCAGGCGGCTGACGGCCTCTTTTTGAACGTCGTCGGGtt                       >  2:1026351/1‑140 (MQ=255)
                                                                                                             tgtgTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATTGATGAGTTCCTGATAAATAATTTCCAGGCGGCTGACGGCCTCTTTTTGAACGTCGTCGGGtt                       >  1:629668/1‑140 (MQ=255)
                                                                                                             tgtgTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATTGATGAGTTCCTGATAAATAATTTCCAGGCGGCTGACGGCCTCTTTTTGAACGTCGTCGGGtt                       >  2:638217/1‑140 (MQ=255)
                                                                                                             tgtgTCTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATTGATGAGTTCCTGATAAATAATTTCCAGGCGGCTGACGGCCTCTTTTTGAACGTCGTCGGGtt                       >  2:955525/1‑140 (MQ=255)
                                                                                                                  cTTCGCGTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGCGGCGTGCTATTGATGAGTTCCTGATAAATAATTTCCAGGCGGCTGACGGCCTCTTTTTGAACGTCGTCGGGTTGATgg                  <  1:1402006/140‑1 (MQ=255)
                                                                                                                     cgcgTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATTGATGAGTTCCTGATAAATAATTTCCAGGCGGCTGACGGCCTCTTTTTGAACGTCGTCGGGTTGATGGCtt               >  2:722992/1‑139 (MQ=255)
                                                                                                                     cgcgTTTACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATTGATGAGTTCCTGATAAATAATTTCCAGGCGGCTGACGGCCTCTTTTTGAACGTCGTCGGGTTGATGGCTg               <  1:488100/140‑1 (MQ=255)
                                                                                                                           tACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATTGATGAGTTCCTGATAAATAATTTCCAGGCGGCTGACGGCCTCTTTTTGAACGTCGTCGGGTTGATGGCTGCCTTCa         >  1:782557/1‑140 (MQ=255)
                                                                                                                           tACCCCACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATTGATGAGTTCCTGATAAATAATTTCCAGGCGGCTGACGGCCTCTTTTTGAACGTCGTCGGGTTGATGGCTGCCTTCa         >  1:849817/1‑140 (MQ=255)
                                                                                                                               ccACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATTGATGAGTTCCTGATAAATAATTTCCAGGCGGCTGACGGCCTCTTTTTGAACGTCGTCGGGTTGATGGCTGCCTTCATTaa     <  1:410688/140‑1 (MQ=255)
                                                                                                                               ccACAGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATTGATGAGTTCCTGATAAATAATTTCCAGGCGGCTGACGGCCTCTTTTTGAACGTCGTCGGGTTGATGGCTGCCTTCATTaa     <  1:530447/140‑1 (MQ=255)
                                                                                                                                cacaGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATTGATGAGTTCCTGATAAATAATTTCCAGGCGGCTGACGGCCTCTTTTTGAACGTCGTCGGGTTGATGGCTGCCTTAATTAAg    <  1:1431650/140‑1 (MQ=255)
                                                                                                                                  caGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATTGATGAGTTCCTGATAAATAATTTCCAGGCGGCTGACGGCCTCTTTTTGAACGTCGTCGGGTTGATGGCTGCCTTCATTAAgcg  <  2:813058/140‑1 (MQ=255)
                                                                                                                                  caGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATTGATGAGTTCCTGATAAATAATTTCCAGGCGGCTGACGGCCTCTTTTTGAACGTCGTCGGGTTGATGGCTGCCTTCATTAAgcg  >  1:209910/1‑140 (MQ=255)
                                                                                                                                  caGATTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATTGATGAGTTCCTGATAAATAATTTCCAGGCGGCTGACGGCCTCTTTTTGAACGTCGTCGGGTTGATGGCTGCCTTCATTAAgcg  >  2:270467/1‑140 (MQ=255)
                                                                                                                                     |                                                                                                                                        
GGCGCTGTTTCCGCTCTCCCGGCAGGCTTTGATAGAAAAGGTCCATCAGCCAGGTTTTCCCGCGTCCTACACCGCCCCACATATATAAGCCACGCACTGGCGTATGCTTTGTGTCTTCGCGTTTACCCCACAGCTTACCGACCCGCGCCATTAGCCCACTCGTCCTGGGGGCTGGTGGCGTGCTATTGATGAGTTCCTGATAAATAATTTCCAGGCGGCTGACGGCCTCTTTTTGAACGTCGTCGGGTTGATGGCTGCCTTCATTAAGCG  >  NC_000913/3379691‑3379960

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A