Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F48 I1 R1 508 125.6 4303852 99.2% 4269421 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,381,551 G→T G270V (GGC→GTC)  degQ → periplasmic serine endoprotease

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,381,5510GT99.3% 464.2 / NA 136G270V (GGC→GTC) degQperiplasmic serine endoprotease
Reads supporting (aligned to +/- strand):  ref base G (1/0);  new base T (57/78);  total (58/78)
Fisher's exact test for biased strand distribution p-value = 4.26e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 139 total aligned reads displayed.

TTAATTGGCATCAACACTGCAATCCTTGCGCCTGGCGGCGGGAGCGTCGGGATTGGATTTGCCATCCCCAGTAATATGGCGCGAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGGCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGTTGCCAGGTTCTGGCTCGGCAAAAGCGGGCGTCAAAGCGGGCGATAT  >  NC_000913/3381415‑3381680
                                                                                                                                        |                                                                                                                                 
   aTTGGCATCAACACTGCAATCCTTGCGCCTGGCGGCGGGAGCGTCGGGATTGGATTTGCCATCCCCAGTAATATGGCGCGAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCaa                                                                                                                             <  2:916190/140‑1 (MQ=255)
   aTTGGCATCAACACTGCAATCCTTGCGCCTGGCGGCGGGAGCGTCGGGATTGGATTTGCCATCCCCAGTAATATGGCGCGAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCaa                                                                                                                             <  2:1655020/140‑1 (MQ=255)
   aTTGGCATCAACACTGCAATCCTTGCGCCTGGCGGCGGGAGCGTCGGGATTGGATTTGCCATCCCCAGTAATATGGCGCGAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCaa                                                                                                                             >  1:861583/1‑140 (MQ=255)
      ggCATCAACACTGCAATCCTTGCGCCTGGCGGCGGGAGCGTCGGGATTGGATTTGCCATCCCCAGTAATATGGCGCGAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAgg                                                                                                                          <  2:221595/140‑1 (MQ=255)
        cATCAACACTGCAATCCTTGCGCCTGGCGGCGGGAGCGTCGGGATTGGATTTGCCATCCCCAGTAATATGGCGCGAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCa                                                                                                                        >  2:1296480/1‑140 (MQ=255)
        cATCAACACTGCAATCCTTGCGCCTGGCGGCGGGAGCGTCGGGATTGGATTTGCCATCCCCAGTAATATGGCGCGAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCa                                                                                                                        >  1:832483/1‑140 (MQ=255)
        cATCAACACTGCAATCCTTGCGCCTGGCGGCGGGAGCGTCGGGATTGGATTTGCCATCCCCAGGAATATGGCGCGAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCa                                                                                                                        >  2:1410329/1‑140 (MQ=255)
          tCAACACTGCAATCCTTGCGCCTGGCGGCGGGAGCGTCGGGATTGGATTTGCCATCCCCAGTAATATGGCGCGAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCAcc                                                                                                                      <  1:892209/140‑1 (MQ=255)
          tCAACACTGCAATCCTTGCGCCTGGCGGCGGGAGCGTCGGGATTGGATTTGCCATCCCCAGTAATATGGCGCGAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCAcc                                                                                                                      <  2:832483/140‑1 (MQ=255)
          tCAACACTGCAATCCTTGCGCCTGGCGGCGGGAGCGTCGGGATTGGATTTGCCATCCCCAGTAATATGGCGCGAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCAcc                                                                                                                      >  2:652413/1‑140 (MQ=255)
               acTGCAATCCTTGCGCCTGGCGGCGGGAGCGTCGGGATTGGATTTGCCATCCCCAGTAATATGGCGCGAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGAt                                                                                                                 <  1:1473803/140‑1 (MQ=255)
                cTGCAATCCTTGCGCCTGGCGGCGGGAGCGTCGGGATTGGATTTGCCATCCCCAGTAATATGGCGCGAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATg                                                                                                                >  1:1831564/1‑140 (MQ=255)
                 tGCAATCCTTGCGCCTGGCGGCGGGAGCGTCGGGATTGGATTTGCCATCCCCAGTAATATGGCGCGAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGa                                                                                                               >  1:719636/1‑140 (MQ=255)
                     aTCCTTGCGCCTGGCGGCGGGAGCGTCGGGATTGGATTTGCCATCCCCAGTAATATGGCGCGAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGc                                                                                                           >  1:2057357/1‑140 (MQ=255)
                      tCCTTGCGCCTGGCGGCGGGAGCGTCGGGATTGGATTTGCCATCCCCAGGAATATGGCGCGAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGcc                                                                                                          >  1:1635484/1‑140 (MQ=255)
                          tGCGCCTGGCGGCGGGAGCGTCGGGATTGGATTTGCCATCCCCAGTAATATGGCGCGAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGata                                                                                                      <  2:628010/140‑1 (MQ=255)
                           gcgcCTGGCGGCGGGATCGCCGGGGTTGGATTTGCCATCCCCAGCAATTTGGCGCCAACAACGGCGCGGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGatat                                                                                                     >  2:1904513/1‑140 (MQ=255)
                             gcCTGGCGGCGGGAGCGTCGGGATTGGATTTGCCATCCCCAGTAATATGGCGCGAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCg                                                                                                   >  1:1317902/1‑140 (MQ=255)
                                tGGCGGCGGGAGCGTCGGGATTGGATTTGCCATCCCCAGTAATATGGCGCGAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCa                                                                                                <  1:714435/140‑1 (MQ=255)
                                tGGCGGCGGGAGCGTCGGGATTGGATTTGCCATCCCCAGTAATATGGCGCGAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCa                                                                                                <  2:535801/140‑1 (MQ=255)
                                tGGCGGCGGGAGCGTCGGGATTGGATTTGCCATCCCCAGTAATATGGCGCGAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCa                                                                                                <  2:305586/140‑1 (MQ=255)
                                 ggcggcGGGAGCGTCGGGATTGGATTTGCCATCCCCAGTAATATGGCGCGAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCaa                                                                                               <  1:1525085/140‑1 (MQ=255)
                                 ggcggcGGGAGCGTCGGGATTGGATTTGCCATCCCCAGTAATATGGCGCGAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCaa                                                                                               <  2:611515/140‑1 (MQ=255)
                                 ggcggcGGGAGCGTCGGGATTGGATTTGCCATCCCCAGTAATATGGCGCGAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCaa                                                                                               <  2:247493/140‑1 (MQ=255)
                                  gcggcgGGAGCGTCGGGATTGGATTTGCCATCCCCAGTAATATGGCGCGAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCaaa                                                                                              >  2:412651/1‑140 (MQ=255)
                                     gcggGAGCGTCGGGATTGGATTTGCCATCCCCAGTAATATGGCGCGAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGcc                                                                                           <  1:1559158/140‑1 (MQ=255)
                                       gggAGCGTCGGGATTGGATTTGCCATCCCCAGTAATATGGCGCGAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCtt                                                                                         <  1:1027898/140‑1 (MQ=255)
                                       gggAGCGTCGGGATTGGATTTGCCATCCCCAGTAATATGGCGCGAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCtt                                                                                         <  2:861583/140‑1 (MQ=255)
                                       gggAGCGTCGGGATTGGATTTGCCATCCCCAGTAATATGGCGCGAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCtt                                                                                         <  2:1831564/140‑1 (MQ=255)
                                          aGCGTCGGGATTGGATTTGCCATCCCCAGTAATATGGCGCGAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCaa                                                                                      <  2:1638394/140‑1 (MQ=255)
                                          aGCGTCGGGATTGGATTTGCCATCCCCAGTAATATGGCGCGAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCaa                                                                                      <  2:441218/140‑1 (MQ=255)
                                                            gCCATCCCCAGTAATATGGCGCGAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTgg                                                                    >  2:1227682/1‑140 (MQ=255)
                                                            gCCATCCCCAGTAATATGGCGCGAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTg                                                                     >  1:1553179/1‑139 (MQ=255)
                                                            gCCATCCCCAGTAATATGGCGCGAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTg                                                                     <  2:1553179/139‑1 (MQ=255)
                                                                     aGTAATATGGCGCGAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGt                                                           >  2:2129810/1‑140 (MQ=255)
                                                                          tatGGCGCGAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCg                                                      <  1:1227682/140‑1 (MQ=255)
                                                                            tGGCGCGAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCATACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTg                                                            >  2:195307/1‑132 (MQ=255)
                                                                            tGGCGCGAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAGCCTTGACGTGCAGCGTGGCGCGTTTg                                                            <  1:195307/132‑1 (MQ=255)
                                                                            tGGCGCGAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGaa                                                    >  1:1351185/1‑140 (MQ=255)
                                                                            tGGCGCGAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGaa                                                    >  2:301975/1‑140 (MQ=255)
                                                                            tGGCGCGAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGaa                                                    >  2:879201/1‑140 (MQ=255)
                                                                            tGGCGCGAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGaa                                                    >  1:2073725/1‑140 (MQ=255)
                                                                             ggCGCGGACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAg                                                   <  2:1039747/140‑1 (MQ=255)
                                                                               cgcgAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAgtt                                                 >  2:1660906/1‑139 (MQ=255)
                                                                               cgcgAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAgtg                                                 >  2:2142767/1‑140 (MQ=255)
                                                                               cgcgAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAgtg                                                 <  2:468622/140‑1 (MQ=255)
                                                                                gcgAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAgtgt                                                >  1:471761/1‑140 (MQ=255)
                                                                                 cgAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGGGTGGCGCGTTTGTCAGCGAAGTGtt                                               >  1:1637306/1‑140 (MQ=255)
                                                                                 cgAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGtt                                               >  1:1473493/1‑140 (MQ=255)
                                                                                 cgAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGtt                                               >  1:1166035/1‑140 (MQ=255)
                                                                                 cgAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGtt                                               >  2:683305/1‑140 (MQ=255)
                                                                                 cgAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGtt                                               >  2:224960/1‑140 (MQ=255)
                                                                                 cgAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGtt                                               >  1:1082321/1‑140 (MQ=255)
                                                                                 cgAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGtt                                               >  1:757867/1‑140 (MQ=255)
                                                                                 cgAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGtt                                               >  2:1300079/1‑140 (MQ=255)
                                                                                 cgAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGtt                                               >  2:1786338/1‑140 (MQ=255)
                                                                                 cgAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGtt                                               >  2:1511326/1‑140 (MQ=255)
                                                                                 cgAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGtt                                               >  2:1889947/1‑140 (MQ=255)
                                                                                   aaCACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGTTGc                                             <  2:1635484/140‑1 (MQ=255)
                                                                                   aaCACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGTTGc                                             >  2:1961875/1‑140 (MQ=255)
                                                                                   aaCACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGTTGc                                             <  1:224960/140‑1 (MQ=255)
                                                                                        tGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGTTGcc                                            >  1:1592734/1‑136 (MQ=255)
                                                                                              agcagcTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGGCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGTTGCCAGGCTCTGGc                                  >  1:1896405/1‑140 (MQ=255)
                                                                                                cagcTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGTTGCCAGGTTCTGGCTc                                >  1:1169656/1‑140 (MQ=255)
                                                                                                 agcTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGTTGCCAGGTTCTGGCTCg                               <  2:1421444/140‑1 (MQ=255)
                                                                                                     tATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGTTGCCAGGTTCTGGCTCGGCaa                           >  2:1546101/1‑140 (MQ=255)
                                                                                                         gACTTTGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGTTGCCAGGTTCTGGCTCGGCAAAAGc                       <  1:652413/140‑1 (MQ=255)
                                                                                                            tttGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCCTTTGTCAGCGAAGTGTTGCCAGGTTCTGGCTCGGCAAAAGCggg                    >  1:1475756/1‑140 (MQ=255)
                                                                                                              tGGTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGTTGCCAGGTTCTGGCTCGGCAAAAGCGGGCg                  >  2:1201271/1‑140 (MQ=255)
                                                                                                               ggTGAAATCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGTTGCCAGGTTCTGGCTCGGCAAAAGCGGGCGt                 >  1:103842/1‑140 (MQ=255)
                                                                                                                   aaaTCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGTTGCCAGGTTCTGGCTCGGCAAAAGCGGGCGTCaaa             <  2:2073725/140‑1 (MQ=255)
                                                                                                                     aTCAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGTTGCCAGGTTCTGGCTCGGCAAAAGCGGGCGTCAAAGc           >  2:1882175/1‑140 (MQ=255)
                                                                                                                       cAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGTTGCCAGGTTCTGGCTCGGCAAAAGCGGGCGTCAAAGCgg         <  2:145164/140‑1 (MQ=255)
                                                                                                                       cAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGTTGCCAGGTTCTGGCTCGGCAAAAGCGGGCGTCAAAGCgg         <  1:1660906/140‑1 (MQ=255)
                                                                                                                       cAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGTTGCCAGGTTCTGGCTCGGCAAAAGCGGGCGTCAAAGCgg         <  1:1622820/140‑1 (MQ=255)
                                                                                                                       cAAACGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGTTGCCAGGTTCTGGCTCGGCAAAAGCGGGCGTCAAAGCgg         <  1:879201/140‑1 (MQ=255)
                                                                                                                       aaaaCGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGTTGCCAGGTTCTGGCTCGGCAAAAGCGGGCGTCAAAGCgg         <  1:958874/139‑1 (MQ=255)
                                                                                                                        aaaCGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGTTGCCAGGTTCTGGCTCGGCAAAAGCGGGCGTCAAAGCggg        <  1:1760654/140‑1 (MQ=255)
                                                                                                                        aaaCGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGTTGCCAGGTTCTGGCTCGGCAAAAGCGGGCGTCAAAGCggg        <  1:1882175/140‑1 (MQ=255)
                                                                                                                        aaaCGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGTTGCCAGGTTCTGGCTCGGCAAAAGCGGGCGTCAAAGCggg        <  1:1296480/140‑1 (MQ=255)
                                                                                                                        aaaCGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCATCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGTTGCCAGGTTCTGGCTCGGCAAAAGCGGGCGTCAAAGCggg        <  1:1222022/140‑1 (MQ=255)
                                                                                                                         aaCGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGTTGCCAGGTTCTGGCTCGGCAAAAGCGGGCGTCAAAGCGGGc       <  2:841640/140‑1 (MQ=255)
                                                                                                                          aCGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGTTGCCAGGTTCTGGCTCGGCAAAAGCGGGCGTCAAAGCGGGCg      <  1:1511326/140‑1 (MQ=255)
                                                                                                                          aCGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGTTGCCAGGTTCTGGCTCGGCAAAAGCGGGCGTCAAAGCGGGCg      <  1:1447414/140‑1 (MQ=255)
                                                                                                                          aCGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGTTGCCAGGTTCTGGCTCGGCAAAAGCGGGCGTCAAAGCGGGCg      <  2:757867/140‑1 (MQ=255)
                                                                                                                          aCGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGTTGCCAGGTTCTGGCTCGGCAAAAGCGGGCGTCAAAGCGGGCg      <  1:1684565/140‑1 (MQ=255)
                                                                                                                          aCGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGTTGCCAGGTTCTGGCTCGGCAAAAGCGGGCGTCAAAGCGGGCg      <  2:63172/140‑1 (MQ=255)
                                                                                                                          aCGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGTTGCCAGGTTCTGGCTCGGCAAAAGCGGGCGTCAAAGCGGGCg      <  1:1409859/140‑1 (MQ=255)
                                                                                                                          aCGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGTTGCCAGGTTCTGGCTCGGCAAAAGCGGGCGTCAAAGCGGGCg      <  1:221370/140‑1 (MQ=255)
                                                                                                                          aCGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGTTGCCAGGTTCTGGCTCGGCAAAAGCGGGCGTCAAAGCGGGCg      <  1:1782266/140‑1 (MQ=255)
                                                                                                                          aCGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGTTGCCAGGTTCTGGCTCGGCAAAAGCGGGCGTCAAAGCGGGCg      <  1:1786338/140‑1 (MQ=255)
                                                                                                                          aCGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGTTGCCAGGTTCTGGCTCGGCAAAAGCGGGCGTCAAAGCGGGCg      <  1:261446/140‑1 (MQ=255)
                                                                                                                          aCGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGTTGCCAGGTTCTGGCTCGGCAAAAGCGGGCGTCAAAGCGGGCg      <  1:615831/140‑1 (MQ=255)
                                                                                                                          aCGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGTTGCCAGGTTCTGGCTCGGCAAAAGCGGGCGTCAAAGCGGGCg      <  1:683305/140‑1 (MQ=255)
                                                                                                                          aCGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGTTGCCAGGTTCTGGCTCGGCAAAAGCGGGCGTCAAAGCGGGCg      <  1:685063/140‑1 (MQ=255)
                                                                                                                          aCGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGTTGCCAGGTTCTGGCTCGGCAAAAGCGGGCGTCAAAGCGGGCg      <  2:103842/140‑1 (MQ=255)
                                                                                                                          aCGCGGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGTTGCCAGGTTCTGGCTCGGCAAAAGCGGGCGTCAAAGCGGGCg      <  2:1600552/140‑1 (MQ=255)
                                                                                                                            gcgGTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGTTGCCAGGTTCTGGCTCGGCAAAAGCGGGCGTCAAAGCGGGCGat    <  2:1166035/140‑1 (MQ=255)
                                                                                                                              ggTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGTTGCCAGGTTCTGGCTCGGCAAAAGCGGGCGTCAAAGCGGGCGatat  <  1:1904513/140‑1 (MQ=255)
                                                                                                                              ggTTTGTTAGTCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGTTGCCAGGTTCTGGCTCGGCAAAAGCGGGCGTCAAAGCGGGCGatat  <  1:1201271/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                 
TTAATTGGCATCAACACTGCAATCCTTGCGCCTGGCGGCGGGAGCGTCGGGATTGGATTTGCCATCCCCAGTAATATGGCGCGAACACTGGCGCAGCAGCTTATCGACTTTGGTGAAATCAAACGCGGTTTGTTAGGCATCAAAGGCACCGAGATGAGTGCCGATATCGCCAAAGCCTTCAACCTTGACGTGCAGCGTGGCGCGTTTGTCAGCGAAGTGTTGCCAGGTTCTGGCTCGGCAAAAGCGGGCGTCAAAGCGGGCGATAT  >  NC_000913/3381415‑3381680

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A