Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A15 F48 I1 R1 115 87.5 3003888 99.1% 2976853 139.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,449,112 G→T L20M (CTG→ATG)  rplP ← 50S ribosomal subunit protein L16

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,449,1120GT97.7% 305.1 / ‑2.8 88L20M (CTG→ATG) rplP50S ribosomal subunit protein L16
Reads supporting (aligned to +/- strand):  ref base G (1/1);  new base T (49/37);  total (50/38)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTACGGCCTTTACGCTGCTGCTTTTTAGGCTGAGCAGCCGGTTTTTCCGGTTGTTCAACAG  >  NC_000913/3448977‑3449246
                                                                                                                                       |                                                                                                                                      
tCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACcg                                                                                                                                    <  1:1093333/140‑1 (MQ=255)
tCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACcg                                                                                                                                    <  2:438207/140‑1 (MQ=255)
     aTCTTACCTTGACGCTTAACTGCACGGGTCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGtt                                                                                                                               >  1:966338/1‑140 (MQ=255)
     aTCTTACCTTGACGCTTAACTGCACGGGTCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGtt                                                                                                                               >  1:1191966/1‑140 (MQ=255)
       cTTACCTTGACGCTTAACTGCACGGGTCATAGCACGACGTGCTGCTTCGATGTGACGGGTAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAGCATCCGTACCCTGCGCCATACCTCGGTTAc                                                                                                                             >  1:1023597/1‑140 (MQ=255)
       cTTACCTTGACGCTTAACTGCACGGGTCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTAc                                                                                                                             <  1:444574/140‑1 (MQ=255)
       cTTACCTTGACGCTTAACTGCACGGGTCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTAc                                                                                                                             <  1:61157/140‑1 (MQ=255)
       cTTACCTTGACGCTTAACTGCACGGGTCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTAc                                                                                                                             >  2:38267/1‑140 (MQ=255)
       cTTACCTTGACGCTTAACTGCACGGGGCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGTCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTAc                                                                                                                             >  1:1417236/1‑140 (MQ=255)
         tACCTTGACGCTTAACTGCACGGGTCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTACgg                                                                                                                           >  2:257570/1‑140 (MQ=255)
          aCCTTGACGCTTAACTGCACGGGTCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTACGGc                                                                                                                          >  2:275260/1‑140 (MQ=255)
          aCCTTGACGCTTAACTGCACGGGTCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTACGGc                                                                                                                          >  2:1202066/1‑140 (MQ=255)
          aCCTTGACGCTTAACTGCACGGGTCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTACGGc                                                                                                                          >  2:1194911/1‑140 (MQ=255)
               gACGCTTAACTGCACGGGTCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTACGGCCtttt                                                                                                                     >  2:163742/1‑139 (MQ=255)
               gACGCTTAACTGCACGGGTCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTACGGCCTTtg                                                                                                                     >  1:816898/1‑140 (MQ=255)
                          gCACGGGTCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACg                                                                                                          >  2:347217/1‑140 (MQ=255)
                          gCACGGGTCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACg                                                                                                          <  2:1225389/140‑1 (MQ=255)
                           cACGGGTCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACgg                                                                                                         >  1:698619/1‑140 (MQ=255)
                           cACGGGTCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACgg                                                                                                         >  2:763114/1‑140 (MQ=255)
                             cGGGTCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCA‑TTTACGGAAt                                                                                                      >  2:1012817/1‑140 (MQ=255)
                                   aTAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGt                                                                                                 >  2:1294535/1‑140 (MQ=255)
                                      gCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATGCCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACg                                                                                              <  1:1106528/140‑1 (MQ=255)
                                        acgacgTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCt                                                                                            <  2:1021799/140‑1 (MQ=255)
                                        acgacgTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCt                                                                                            <  2:698619/140‑1 (MQ=255)
                                         cgacgTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCtt                                                                                           <  2:1449967/140‑1 (MQ=255)
                                         cgacgTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCtt                                                                                           <  2:912317/140‑1 (MQ=255)
                                         cgacgTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCtt                                                                                           <  1:1202066/140‑1 (MQ=255)
                                          gacgTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTATGCttt                                                                                          >  2:918860/1‑140 (MQ=255)
                                          gacgTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCttt                                                                                          >  2:284850/1‑140 (MQ=255)
                                           acgTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTg                                                                                         <  1:302463/140‑1 (MQ=255)
                                           acgTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTg                                                                                         <  2:1148666/140‑1 (MQ=255)
                                           acgTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTCTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTg                                                                                         >  1:913840/1‑140 (MQ=255)
                                            cgTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTgg                                                                                        >  1:29517/1‑140 (MQ=255)
                                            cgTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTgg                                                                                        >  1:817055/1‑140 (MQ=255)
                                            cgTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTgt                                                                                        >  2:570850/1‑139 (MQ=255)
                                               gctgctTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTg                                                                                     >  1:1453466/1‑140 (MQ=255)
                                                    ttCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACa                                                                                >  2:266146/1‑140 (MQ=255)
                                                       gATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTTCGCTTTGGTTGTAACATCa                                                                             <  1:347217/140‑1 (MQ=255)
                                                          cTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCg                                                                          <  2:1453466/140‑1 (MQ=255)
                                                           tGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATTCCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGa                                                                         <  2:917721/140‑1 (MQ=255)
                                                           tGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGa                                                                         <  2:560786/140‑1 (MQ=255)
                                                           tGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGa                                                                         <  2:83631/140‑1 (MQ=255)
                                                           tGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGa                                                                         <  1:1294535/140‑1 (MQ=255)
                                                           tGACGGGCAGTCAGACGACCACGGCCAACAGCTTACAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCTGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGa                                                                         <  1:963194/140‑1 (MQ=255)
                                                            gACGGGCAGTCAAACGACCACGGCCAACAGCTTTCAGGCCGAAACTGCCGAAGCTAACATCCGTGGCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTGCGGAATTTTGTACGCTTTGGTTGTAACATCAGCGAc                                                                        <  2:1417236/140‑1 (MQ=255)
                                                             aCGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACg                                                                       <  1:787900/140‑1 (MQ=255)
                                                             aCGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACg                                                                       <  1:163742/140‑1 (MQ=255)
                                                             aCGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACg                                                                       <  1:763114/140‑1 (MQ=255)
                                                              cGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGc                                                                      <  1:38267/140‑1 (MQ=255)
                                                                   aGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCtt                                                                 >  2:849084/1‑140 (MQ=255)
                                                                               aCGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTACGGCCtt                                                     >  2:181909/1‑140 (MQ=255)
                                                                                cGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTACGGCCttt                                                    >  1:1343685/1‑140 (MQ=255)
                                                                                 ggCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTACGGCCTTTa                                                   <  2:1389837/140‑1 (MQ=255)
                                                                                      aCAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTACGGCCTTTACgctg                                              >  2:1147935/1‑140 (MQ=255)
                                                                                       cAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTACGGCCTTTACgctgc                                             <  1:181909/140‑1 (MQ=255)
                                                                                       cAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCA‑TTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTACGGCCTTTACgctgct                                            <  1:1012817/140‑1 (MQ=255)
                                                                                        aGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTACGGCCTTTACgctgct                                            <  1:1468603/140‑1 (MQ=255)
                                                                                        aGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTACGGCCTTTACgctgct                                            <  1:1489850/140‑1 (MQ=255)
                                                                                        aGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTACGGCCTTTACgctgct                                            <  2:1191966/140‑1 (MQ=255)
                                                                                        aGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTACGGCCTTTACgctgct                                            <  2:816898/140‑1 (MQ=255)
                                                                                        aGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTACGGCCTTTACgctgct                                            <  1:745007/140‑1 (MQ=255)
                                                                                           tttCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTACGGCCTTTACgctgctgct                                         >  2:571299/1‑140 (MQ=255)
                                                                                            ttCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTACGGCCTTTACGCTGCTGCtt                                        >  1:275386/1‑140 (MQ=255)
                                                                                             tCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTACGGCCTTTACGCTGCTGCttt                                       >  2:725443/1‑140 (MQ=255)
                                                                                                            agAAGCTAACATCCGTACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTACGGCCTTTACGCTGCTGCTTTTTAGGCTGAGCAGcc                        <  2:244868/139‑1 (MQ=255)
                                                                                                                gCTAACATCCGTACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTACGGCCTTTACGCTGCTGCTTTTTAGGCTGAGCAGCCGGtt                    >  1:27298/1‑140 (MQ=255)
                                                                                                                 cTAACATCCGTACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTACGGCCTTTACGCTGCTGCTTTTTAGGCTGAGCAGCCGGttt                   <  1:849084/140‑1 (MQ=255)
                                                                                                                     cATCCGTACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTACGGCCTTTACGCTGCTGCTTTTTAGGCTGAGCAGCCGGTTTTTcc               >  2:980686/1‑140 (MQ=255)
                                                                                                                     cATCCGTACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTACGGCCTTTACGCTGCTGCTTTTTAGGCTGAGCAGCCGGTTTTTcc               >  2:476672/1‑140 (MQ=255)
                                                                                                                       tCCGTACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTACGGCCTTTACGCTGCTGCTTTTTAGGCTGAGCAGCCGGTTTTTCCgg             <  1:1147935/140‑1 (MQ=255)
                                                                                                                       tCCGTACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTACGGCCTTTACGCTGCTGCTTTTTAGGCTGAGCAGCCGGTTTTTCCgg             <  1:570850/140‑1 (MQ=255)
                                                                                                                          gTACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTACGGCCTTTACGCTGCTGCTTTTTAGGCTGAGCAGCCGGTTTTTCCGgttg          >  1:1050238/1‑140 (MQ=255)
                                                                                                                           tACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTACGGCCTTTACGCTGCTGCTTTTTAGGCTGAGCAGCCGGTTTTTCCGgttgt         >  1:488909/1‑140 (MQ=255)
                                                                                                                           tACCCTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTACGGCCTTTACGCTGCTGCTTTTTAGGCTGAGCAGCCGGTTTTTCCGgttgt         >  1:197833/1‑140 (MQ=255)
                                                                                                                            actcTGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTTCGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTACGGCCTTTACGCTGCTGCTTTTTAGGCTGAGCAGCCGGTTTTACCGgttgtt        <  2:971432/137‑1 (MQ=255)
                                                                                                                                tGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTACGGCCTTTACGCTGCTGCTTTTTAGGCTGAGCAGCCGGTTTTTCCGGTTGTTCAAc    >  1:1493395/1‑140 (MQ=255)
                                                                                                                                tGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTACGGCCTTTACGCTGCTGCTTTTTAGGCTGAGCAGCCGGTTTTTCCGGTTGTTCAAc    >  1:483766/1‑140 (MQ=255)
                                                                                                                                tGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTACGGCCTTTACGCTGCTGCTTTTTAGGCTGAGCAGCCGGTTTTTCCGGTTGTTCAAc    >  1:1275563/1‑140 (MQ=255)
                                                                                                                                tGCGCCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTACGGCCTTTACGCTGCTGCTTTTTAGGCTGAGCAGCCGGTTTTTCCGGTTGTTCAAc    <  2:484545/140‑1 (MQ=255)
                                                                                                                                 gcgcCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTACGGCCTTTACGCTGCTGCTTTTTAGGCTGAGCAGCCGGTTTTTCCGGTTGTTCAAca   <  1:571299/140‑1 (MQ=255)
                                                                                                                                  cgcCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTACGGCCTTTACGCTGCTGCTTTTTAGGCTGAGCAGCCGGTTTTTCCGGTTGTTCAAcag  >  2:699225/1‑140 (MQ=255)
                                                                                                                                  cgcCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTACGGCCTTTACGCTGCTGCTTTTTAGGCTGAGCAGCCGGTTTTTCCGGTTGTTCAAcag  >  2:813548/1‑140 (MQ=255)
                                                                                                                                  cgcCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTACGGCCTTTACGCTGCTGCTTTTTAGGCTGAGCAGCCGGTTTTTCCGGTTGTTCAAcag  >  2:331004/1‑140 (MQ=255)
                                                                                                                                  cgcCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTACGGCCTTTACGCTGCTGCTTTTTAGGCTGAGCAGCCGGTTTTTCCGGTTGTTCAAcag  >  1:536095/1‑140 (MQ=255)
                                                                                                                                  cgcCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTACGGCCTTTACGCTGCTGCTTTTTAGGCTGAGCAGCCGGTTTTTCCGGTTGTTCAAcag  >  2:845097/1‑140 (MQ=255)
                                                                                                                                  cgcCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTACGGCCTTTACGCTGCTGCTTTTTAGGCTGAGCAGCCGGTTTTTCCGGTTGTTCAAcag  >  1:500576/1‑140 (MQ=255)
                                                                                                                                  cgcCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTACGGCCTTTACGCTGCTGCTTTTTAGGCTGAGCAGCCGGTTTTTCCGGTTGTTCAAcag  >  2:905172/1‑140 (MQ=255)
                                                                                                                                  cgcCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTACGGCCTTTACGCTGCTGCTTTTTAGGCTGAGCAGCCGGTTTTTCCGGTTGTTCAAcag  >  1:6084/1‑140 (MQ=255)
                                                                                                                                  cgcCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTACGGCCTTTACGCTGCTGCTTTTTAGGCTGAGCAGCCGGTTTTTCCGGTTGTTCAAcag  >  1:992591/1‑140 (MQ=255)
                                                                                                                                  cgcCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTACGGCCTTTACGCTGCTGCTTTTTAGGCTGAGCAGCCGGTTTTTCCGGTTGTTCAAcag  >  2:972272/1‑140 (MQ=255)
                                                                                                                                  cgcCATACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTACGGCCTTTACGCTGCTGCTTTTTAGGCTGAGCAGCCGGTTTTTCCGGTTGTTCAAcag  >  2:1268361/1‑140 (MQ=255)
                                                                                                                                       |                                                                                                                                      
TCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATAGCACGACGTGCTGCTTCGATCTGACGGGCAGTCAGACGACCACGGCCAACAGCTTTCAGACCGAAGCTGCCGAAGCTAACATCCGTACCCTGCGCCAGACCGCGGTTACGGCCTTTGTGCATTTTACGGAATTTTGTACGCTTTGGTTGTAACATCAGCGACGCTCCTTATTTACGGCCTTTACGCTGCTGCTTTTTAGGCTGAGCAGCCGGTTTTTCCGGTTGTTCAACAG  >  NC_000913/3448977‑3449246

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A