Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A15 F48 I1 R1 115 87.5 3003888 99.1% 2976853 139.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,450,977 G→T L130M (CTG→ATG)  rplB ← 50S ribosomal subunit protein L2

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,450,9770GT100.0% 307.0 / NA 86L130M (CTG→ATG) rplB50S ribosomal subunit protein L2
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (47/39);  total (47/39)

ACGCAGGGTGACATAAGCACCATCACGAGCAACGATCTGAACGTAAGTACCAGCGGAACGTGCCAGCTGACCGCCTTTACCTGGTTTCATTTCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCAGGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGGCCAGGATGTAACGGCGTTCACCGTCTTTGTACAGAACCAGCGCGATGTTCGCGGAACGGTTC  >  NC_000913/3450840‑3451110
                                                                                                                                         |                                                                                                                                     
acgcagGGCGACATAAGCACCATCACGAGCAACGATCTGAACGAAAGTACCAGCGGAACGTGCCAGCTGACCGCCTTTACCTGGTTTCATTTCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCAtgg                                                                                                                                     >  2:1312364/1‑140 (MQ=255)
  gcagGGTGACATAAGCACCATCACGAGCAACGATCTGAACGTAAGTACCAGCGGAACGTGCCAGCTGACCGCCTTTACCTGGTTTCATTTCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGgtg                                                                                                                                   >  1:1321464/1‑140 (MQ=255)
      ggTGACATAAGCACCATCACGAGCAACGATCTGAACGTAAGTACCAGCGGAACGTGCCAGCTGACCGCCTTTACCTGGTTTCATTTCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTAc                                                                                                                               >  2:536823/1‑140 (MQ=255)
           cATAAGCACCATCACGAGCAACGATCTGAACGTAAGTACCAGCGGAACGTGCCAGCTGACCGCCTTTACCTGGTTTCATTTCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGt                                                                                                                          >  2:762565/1‑140 (MQ=255)
                gCACCATCACGAGCAACGATCTGAACGTAAGTACCAGCGGAACGTGCCAGCTGACCGCCTTTACCTGGTTTCATTTCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGAt                                                                                                                     >  2:1180370/1‑140 (MQ=255)
                  aCCATCACGAGCAACGATCTGAACGTAAGTACCAGCGGAACGTGCCAGCTGACCGCCTTTACCTGGTTTCATTTCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTg                                                                                                                   >  2:1476758/1‑140 (MQ=255)
                  aCCATCACGAGCAACGATCTGAACGTAAG‑ACCAGCGGAACGTGCCAGCTGACCGCCTTTCCCTGGTTTCATTTCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTCGATTgc                                                                                                                  <  2:513483/140‑1 (MQ=255)
                    cATCACGAGCAACGATCTGAACGTAAGTACCAGCGGAACGTGCCAGCTGACCGCCTTTACCTGGTTTCATTTCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTgca                                                                                                                 <  2:1130073/140‑1 (MQ=255)
                    cATCACGAGCAACGATCTGAACGTAAGTACCAGCGGAACGTGCCAGCTGACCGCCTTTACCTGGTTTCATTTCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTgca                                                                                                                 <  1:1185187/140‑1 (MQ=255)
                    cATCACGAGCAACGATCTGAACGTAAGTACCAGCGGAACGTGCCAGCTGACCGCCTTTACCTGGTTTCATTTCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTgca                                                                                                                 >  2:1369367/1‑140 (MQ=255)
                      tCACGAGCAACGATCTGAACGTAAGTACCAGCGGAACGTGCCAGCTGACCGCCTTTACCTGGTTTCATTTCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTgcagc                                                                                                               >  1:156111/1‑140 (MQ=255)
                      tCACGAGCAACGATCTGAACGTAAGTACCAGCGGAACGTGCCAGCTGACCGCCTTTACCTGGTTTCATTTCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTgcagc                                                                                                               >  1:1350080/1‑140 (MQ=255)
                        aCGAGCAACGATCTGAACGTAAGTACCAGCGGAACGTGCCAGCTGACCGCCTTTACCTGGTTTCATTTCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCAt                                                                                                             >  2:944875/1‑140 (MQ=255)
                              aaCGATCTGAACGTAAGTCCCAGCGGAACGTGCCAGCTGACCGCCTTTACCTGGTTTCATTTCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGc                                                                                                       <  1:622071/140‑1 (MQ=255)
                              aaCGATCTGAACGTAAGTACCAGCGGAACGTGCCAGCTGACCGCCTTTACCTGGTTTCATTTCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGc                                                                                                       <  1:714883/140‑1 (MQ=255)
                               aCGATCTGAACGTAAGTACCAGCGGAACGTGCCAGCTGACCGCCTTTACCTGGTTTCATTTCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGCTACCTGGTTTGATTGCAACATCAACGcc                                                                                                      >  2:413653/1‑140 (MQ=255)
                                  aTCTGAACGTAAGTACCAGCGGAACGTGCCAGCTGACCGCCTTTACCTGGTTTCATTTCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGa                                                                                                   >  1:1338724/1‑140 (MQ=255)
                                  aTCTGAACGTAAGTACCAGCGGAACGTGCCAGCTGACCGCCTTTACCTGGTTTCATTTCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGa                                                                                                   >  1:849885/1‑140 (MQ=255)
                                  aTCTGAACGTAAGTACCAGCGGAACGTGCCAGCTGACCGCCTTTACCTGGTTTCATTTCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGa                                                                                                   >  2:320219/1‑140 (MQ=255)
                                      gAACGTAAGTACCAGCGGAACGTGCCAGCTGACCGCCTTTACCTGGTTTCATTTCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGa                                                                                               <  1:1444318/140‑1 (MQ=255)
                                         cGTAAGTACCAGCGGAACGTGCCAGCTGACCGCCTTTACCTGGTTTCATTTCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATc                                                                                            >  2:1368034/1‑140 (MQ=255)
                                          gTAAGTACCAGCGGAACGTGCCAGCTGACCGCCTTTACCTGGTTTCATTTCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCt                                                                                           >  2:197854/1‑140 (MQ=255)
                                             aGTACCAGCGGAACGTGCCAGCTGACCGCCTTTACCTGGTTTCATTTCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGt                                                                                        >  1:1395543/1‑140 (MQ=255)
                                                aCCAGCGGAACGTGCCAGCTGACCGCCTTTACCTGGTTTCATTTCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGc                                                                                     <  1:1492142/140‑1 (MQ=255)
                                                aCCAGCGGAACGTGCCAGCTGACCGCCTTTACCTGGTTTCATTTCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGc                                                                                     <  1:174590/140‑1 (MQ=255)
                                                 ccAGCGGAACGTGCCAGCTGACCGCCTTTACCTGGTTTCATTTCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGTAGCATCAACGCCAGACTGAATCTGGTCGcc                                                                                    >  1:720791/1‑140 (MQ=255)
                                                  cAGCGGAACGTGCCAGCTGACCGCCTTTACCTGGTTTCATTTCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCa                                                                                   <  1:762565/140‑1 (MQ=255)
                                                     cGGAACGTGCCAGCTGACCGCCTTTACCTGGTTTCATTTCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCt                                                                                >  2:154038/1‑140 (MQ=255)
                                                        aaCGTGCCAGCTGACCGCCTTTACCTGGTTTCATTTCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTc                                                                             <  1:412254/140‑1 (MQ=255)
                                                        aaCGTGCCAGCTGACCGCCTTTACCTGGTTTCATTTCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTc                                                                             <  1:1478276/140‑1 (MQ=255)
                                                         aCGTGCCAGCTGACCGCCTTTACCTGGTTTCATTTCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCa                                                                            >  2:902628/1‑140 (MQ=255)
                                                         aCGTGCCAGCTGACCGCCTTTACCTGGTTTCATTTCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCa                                                                            <  2:758432/140‑1 (MQ=255)
                                                          cGTGCCAGCTGACCGCCTTTACCTGGTTTCATTTCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAg                                                                           >  1:1158850/1‑140 (MQ=255)
                                                                 gCTGACCGCCTTTACCTGGTTTCATTTCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTa                                                                    <  2:583395/140‑1 (MQ=255)
                                                                 gCTGACCGCCTTTACCTGGTTTCATTTCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTa                                                                    <  1:1369367/140‑1 (MQ=255)
                                                                     aCCGCCTTTACCTGGTTTCATTTCTACGTTATGAACAGTAGAACCGACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAgggg                                                                >  1:925810/1‑140 (MQ=255)
                                                                     aCCGCCTTTACCTGGTTTCATTTCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAgggg                                                                <  1:536823/140‑1 (MQ=255)
                                                                      ccGCCTTTACCTGGTTTCATTTCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGGc                                                               >  1:396976/1‑140 (MQ=255)
                                                                      ccGCCTTTACCTGGTTTCATTTCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGGc                                                               <  2:546229/140‑1 (MQ=255)
                                                                        gCCTTTACCTGGTTTCATTTCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGTAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGGCCa                                                             <  2:720791/140‑1 (MQ=255)
                                                                        gCCTTTACCTGGTTTCATTTCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGGCCa                                                             <  1:1368034/140‑1 (MQ=255)
                                                                                cTGGTTTCATTTCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGGCCAGGATGTaa                                                     <  1:1169272/140‑1 (MQ=255)
                                                                                    tttCATTTCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGGCCAGGATGTAACGGc                                                 >  2:538318/1‑140 (MQ=255)
                                                                                     ttCATTTCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGGCCAGGATGTAACGGCg                                                <  2:112179/140‑1 (MQ=255)
                                                                                      tCATTTCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGGCCAGGATGTAACgg                                                  <  2:1433553/137‑1 (MQ=255)
                                                                                      tCATTTCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGGCCAGGATGTAACgg                                                  >  1:1433553/1‑137 (MQ=255)
                                                                                       cATTTCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGGCCAGGATGTAACGGCGtt                                              >  2:1181725/1‑140 (MQ=255)
                                                                                        aTTTCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGGCCAGGATGTAACGGCGTTc                                             <  2:1350080/140‑1 (MQ=255)
                                                                                          ttCTACGTTATGAACAGTAGAACCGACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGGCCAGGATGTAACGGCGTTCAc                                           <  2:925810/140‑1 (MQ=255)
                                                                                          ttCTACGTTATGAACAGTAGAACCAACGGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGGCCAGGATGTAACGGCGTTCAc                                           <  2:849885/140‑1 (MQ=255)
                                                                                          ttCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGGCCAGGATGTAACGGCGTTCAc                                           <  2:856622/140‑1 (MQ=255)
                                                                                          ttCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGGCCAGGATGTAACGGCGTTCAc                                           <  2:1395543/140‑1 (MQ=255)
                                                                                          ttCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGGCCAGGATGTAACGGCGTTCAc                                           <  1:944875/140‑1 (MQ=255)
                                                                                            cTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGGCCAGGATGTAACGGCGTTCACCg                                         <  1:440784/140‑1 (MQ=255)
                                                                                             tACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGGCCAGGATGTAACGGCGTTCACCGt                                        >  1:1272964/1‑140 (MQ=255)
                                                                                               agTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGGCCAGGATGTAACGGCGTTCACCGTCt                                      <  2:156111/139‑1 (MQ=255)
                                                                                                gTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGGCCAGGATGTAACGGCGTTCACCGTCtt                                     <  1:197854/140‑1 (MQ=255)
                                                                                                       aCAGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGGCCAGGATGTAACGGCGTTCACCGTCTTTGTACAg                              <  1:889919/140‑1 (MQ=255)
                                                                                                         aGTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGGCCAGGATGTAACGGCGTTCACCGTCTTTGTACAGaa                            <  1:538318/140‑1 (MQ=255)
                                                                                                          gTAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGGCCAGGATGTAACGGCGTTCACCGTCTTTGTACAGAAc                           >  1:568445/1‑140 (MQ=255)
                                                                                                           tAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGGCCAGGATGTAACGGCGTTCACCGTCTTTGTACAGAAcc                          >  1:1297284/1‑140 (MQ=255)
                                                                                                           tAGAACCAACCGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGGCCAGGATGTAACGGCGTTCACCGTCTTTGTACAGAAcc                          >  2:442083/1‑140 (MQ=255)
                                                                                                              aaccaaccGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGGCCAGGATGTAACGGCGTTCACCGTCTTTGTACAGAACCAgc                       >  1:1235768/1‑140 (MQ=255)
                                                                                                              aaccaaccGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGGCCAGGATGTAACGGCGTTCACCGTCTTTGTACAGAACCAgc                       >  2:1478359/1‑140 (MQ=255)
                                                                                                              aaccaaccGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGGCCAGGATGTAACGGCGTTCACCGTCTTTGTACAGAACCAgc                       >  1:305149/1‑140 (MQ=255)
                                                                                                                ccaaccGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGGCCAGGATGTAACGGCGTTCACCGTCTTTGTACAGAACCAgcgc                     >  1:1125288/1‑140 (MQ=255)
                                                                                                                   accGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGGCCAGGATGTAACGGCGTTCACCGTCTTTGTACAGAACCAGCGCGAt                  >  2:154401/1‑140 (MQ=255)
                                                                                                                   accGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGGCCAGGATGTAACGGCGTTCACCGTCTTTGTACAGAACCAGCGCGAt                  >  2:493569/1‑140 (MQ=255)
                                                                                                                   accGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGGCCAGGATGTAACGGCGTTCACCGTCTTTGTACAGAACCAGCGCGAt                  >  2:512042/1‑140 (MQ=255)
                                                                                                                   accGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGGCCAGGATGTAACGGCGTTCACCGTCTTTGTACAGAACCAGCGCGAt                  >  1:884536/1‑140 (MQ=255)
                                                                                                                   accGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGGCCAGGATGTAACGGCGTTCACCGTCTTTGTACAGAACCAGCGCGAt                  >  2:1360045/1‑140 (MQ=255)
                                                                                                                   accGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGGCCAGGATGTAACGGCGTTCACCGTCTTTGTACAGAACCAGCGCGAt                  >  2:989707/1‑140 (MQ=255)
                                                                                                                   accGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGGCCAGGATGTAACGGCGTTCACCGTCTTTGTACAGAACCAGCGCGAt                  >  1:1202923/1‑140 (MQ=255)
                                                                                                                   accGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGGCCAGGATGTAACGGCGTTCACCGTCTTTGTACAGAACCAGCGCGAt                  >  1:1270950/1‑140 (MQ=255)
                                                                                                                     cGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGGCCAGGATGTAACGGCGTTCACCGTCTTTGTACAGAACCAGCGCGATGt                >  1:359521/1‑140 (MQ=255)
                                                                                                                     cGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGGCCAGGATGTAACGGCGTTCACCGTCTTTGTACAGAACCAGCGCGATGt                >  1:1277466/1‑140 (MQ=255)
                                                                                                                     cGGGATGTTGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGGCCAGGATGTAACGGCGTTCACCGTCTTTGTACAGAACCAGCGCGATGt                >  1:921527/1‑140 (MQ=255)
                                                                                                                            ttGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGGCCAGGATGTAACGGCGTTCACCGTCTTTGTACAGAACCAGCGCGATGTTCGCGGa         <  2:1338724/140‑1 (MQ=255)
                                                                                                                            ttGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGGCCAGGATGTAACGGCGTTCACCGTCTTTGTACAGAACCAGCGCGATGTTCGCGGa         <  2:1235768/140‑1 (MQ=255)
                                                                                                                             tGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGGCCAGGATGTAACGGCGTTCACCGTCTTTGTACAGAACCAGCGCGATGTTCGCGGaa        <  1:1360045/140‑1 (MQ=255)
                                                                                                                             tGCGCATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGGCCAGGATGTAACGGCGTTCACCGTCTTTGTACAGAACCAGCGCGATGTTCGCGGaa        <  2:884536/140‑1 (MQ=255)
                                                                                                                              gcgcATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGGCCAGGATGTAACGGCGTTCACCGTCTTTGTACAGAACCAGCGCGATGTTCGCGGAAc       <  1:1180370/140‑1 (MQ=255)
                                                                                                                               cgcATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGACCAGGATGTAACGGCGTTCACCGTCTTTGTACAGAACCAGCGCGATGTTCGCGGAACg      >  2:1133471/1‑140 (MQ=255)
                                                                                                                                 cATCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGGCCAGGATGTAACGGCGTTCACCGTCTTTGTACAGAACCAGCGCGATGTTCGCGGAACGGt    >  2:38167/1‑140 (MQ=255)
                                                                                                                                   tCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGGCCAGGATGTAACGGCGTTCACCGTCTTTGTACAGAACCAGCGCGATGTTCGCGGAACGGTTc  >  2:802946/1‑140 (MQ=255)
                                                                                                                                   tCGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGGCCAGGATGTAACGGCGTTCACCGTCTTTGTACAGAACCAGCGCGATGTTCGCGGAACGGTTc  <  2:396976/140‑1 (MQ=255)
                                                                                                                                   acGGCATGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGGCCAGGATGTAACGGCGTTCACCGTCTTTGTACAGAACCAGCGCGATGTTCGCGGAACGGTTc  <  2:1158850/139‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                     
ACGCAGGGTGACATAAGCACCATCACGAGCAACGATCTGAACGTAAGTACCAGCGGAACGTGCCAGCTGACCGCCTTTACCTGGTTTCATTTCTACGTTATGAACAGTAGAACCAACCGGGATGTTGCGCATCGGCAGGGTGTTACCTGGTTTGATTGCAGCATCAACGCCAGACTGAATCTGGTCGCCAGCTTTCAGGCCTTTAGGGGCCAGGATGTAACGGCGTTCACCGTCTTTGTACAGAACCAGCGCGATGTTCGCGGAACGGTTC  >  NC_000913/3450840‑3451110

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A