Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A15 F48 I1 R1 115 87.5 3003888 99.1% 2976853 139.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,514,325 G→T A22D (GCT→GAT)  gph ← phosphoglycolate phosphatase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,514,3250GT100.0% 304.4 / NA 85A22D (GCT→GAT) gphphosphoglycolate phosphatase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (43/42);  total (43/42)

GACGCGCCCAGGTCAATGCGCGCTCCATCAGAACATCTGCGCCGTTACCAATCCAGGTAATAACGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGAGCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGACTTTTTTGTAGTCTGGCTGGTCGAA  >  NC_000913/3514191‑3514453
                                                                                                                                      |                                                                                                                                
gACGCGCCCAGGTCAATGCGCGCTCCATCAGAACATCTGCGCCGTTACCAATCCAGGTAATAACGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTg                                                                                                                             >  2:1313725/1‑140 (MQ=255)
     gcCCAGGTCAATGCGCGCTCCATCAGAACATCTGCGCCGTTACCAATCCAGGTAATAACGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGAc                                                                                                                        <  2:411564/140‑1 (MQ=255)
     gcCCAGGTCAATGCGCGCTCCATCAGAACATCTGCGCCGTTACCAATCCAGGTAATAACGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGAc                                                                                                                        <  1:626182/140‑1 (MQ=255)
     gcCCAGGTCAATGCGCGCTCCATCAGAACATCTGCGCCGTTACCAATCCAGGTAATAACGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGAc                                                                                                                        <  2:304413/140‑1 (MQ=255)
     gcCCAGGTCAATGC‑CGCTCCATCAGAACATCTGCGCCGTTACCAATCCAGGTAATAACGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCTCAGCAGCAAGACCAGGATCACTGTCGAcc                                                                                                                       <  2:140532/140‑1 (MQ=255)
      cccAGGTCAATGCGCGCTCCATCAGAACATCTGCGCCGTTACCAATCCAGGTAATAACGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGAcc                                                                                                                       <  1:803836/140‑1 (MQ=255)
      cccAGGTCAATGCGCGCTCCATCAGAACATCTGCGCCGTTACCAATCCAGGTAATAACGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGAcc                                                                                                                       >  1:1437733/1‑140 (MQ=255)
      cccAGGTCAATGCGCGCTCCATCAGAACATCTGCGCCGTTACCAATCCAGGTAATAACGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGAcc                                                                                                                       >  2:1086216/1‑140 (MQ=255)
      cccAGGTCAATGCGCGCTCCATCAGAACATCTGCGCCGTTACCAATCCAGGTAATAACGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGAcc                                                                                                                       >  1:1080719/1‑140 (MQ=255)
      cccAGGTCAATGCGCGCTCCATCAGAACATCTGCGCCGTTACCAATCCAGGTAATAACGCGTTCTACACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGAcc                                                                                                                       >  2:1004978/1‑140 (MQ=255)
         aGGTCAATGCGCGCTCCATCAGAACATCTGCGCCGTTACCAATCCAGGTAATAACGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGc                                                                                                                    <  1:51434/140‑1 (MQ=255)
          ggTCAATGCGCGCTCCATCAGAACATCTGCGCCGTTACCAATCCAGGTAATAACGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCg                                                                                                                   >  2:1195353/1‑140 (MQ=255)
            tCAATGCGCGCTCCATCAGAACATCTGCGCCGTTACCAATCCAGGTAATAACGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTa                                                                                                                 <  2:1152099/140‑1 (MQ=255)
            tCAATGCGCGCTCCATCAGAACATCTGCGCCGTTACCAATCCAGGTAATAACGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTa                                                                                                                 <  1:794282/140‑1 (MQ=255)
             cAATGTGCGCTCCATCAGAACATCTGCGCCGTTACCAATCCAGGTAATAACGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTAc                                                                                                                <  2:288947/140‑1 (MQ=255)
                tGCGCGCTCCATCAGAACATCTGCGCCGTTACCAATCCAGGTAATAACGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCAt                                                                                                             >  1:471504/1‑140 (MQ=255)
                 gcgcgcTCCATCAGAACATCTGCGCCGTTACCAATCCAGGTAATAACGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATc                                                                                                            <  2:67836/140‑1 (MQ=255)
                  cgcgcTCCATCAGAACATCTGCGCCGTTACCAATCCAGGTAATAACGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCa                                                                                                           <  1:799206/140‑1 (MQ=255)
                                 cATCTGCGCCGTTACCAATCCAGGTAATAACGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGAcg                                                                                            >  1:21359/1‑140 (MQ=255)
                                 cATCTGCGCCGTTACCAATCCAGGTAATAACGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGAcg                                                                                            <  2:449596/140‑1 (MQ=255)
                                 aaTCTGCGCCGTTACCAATCCAGGTAATAACGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGAcg                                                                                            <  2:21359/139‑1 (MQ=255)
                                   tCTGCGCCGTTACCAATCCAGGTAATAACGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGAcgcc                                                                                          >  1:1166736/1‑140 (MQ=255)
                                   tCTGCGCCGTTACCAATCCAGGTAATAACGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGAcgcc                                                                                          >  1:153694/1‑140 (MQ=255)
                                   tCTGCGCCGTTACCAATCCAGGTAATAACGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGAcgcc                                                                                          >  1:13999/1‑140 (MQ=255)
                                    cTGCGCCGTTACCAATCCAGGTAATAACGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGAcgccg                                                                                         >  2:47360/1‑140 (MQ=255)
                                     tGCGCCGTTACCAATCCAGGTAATAACGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGAcgccgc                                                                                        >  2:489486/1‑140 (MQ=255)
                                      gcgcCGTTACCAATCCAGGTAATAACGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCcgcg                                                                                       <  2:216718/140‑1 (MQ=255)
                                         ccGTTACCAATCCAGGTAATAACGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAat                                                                                    <  2:1091616/140‑1 (MQ=255)
                                         ccGTTACCAATCCAGGTAATAACGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAat                                                                                    <  1:47360/140‑1 (MQ=255)
                                         ccGTTACCAATCCAGGTAATAACGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAat                                                                                    >  1:1456869/1‑140 (MQ=255)
                                            ttACCAATCCAGGTAATAACGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATc                                                                                 >  2:226486/1‑140 (MQ=255)
                                            ttACCAATCCAGGTAATAACGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCAACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAatatt                                                                                 >  2:2979/1‑139 (MQ=255)
                                              aCCAATCCAGGTAATAACGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCGCTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCtt                                                                               <  2:360734/140‑1 (MQ=255)
                                                  aTCCAGGTAATAACGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCaaa                                                                           >  2:1106856/1‑140 (MQ=255)
                                                   tCCAGGTAATAACGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAAc                                                                          <  2:153694/140‑1 (MQ=255)
                                                   tCCAGGTAATAACGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAAc                                                                          <  1:268820/140‑1 (MQ=255)
                                                      aGGTAATAACGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTa                                                                       >  1:1379133/1‑140 (MQ=255)
                                                        gTAATAACGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTAtt                                                                     >  1:659539/1‑140 (MQ=255)
                                                        gTAATAACGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTAtt                                                                     <  2:1112243/140‑1 (MQ=255)
                                                        gTAATAACGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTAtt                                                                     <  1:842864/140‑1 (MQ=255)
                                                          aataaCGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCa                                                                   <  1:1106856/140‑1 (MQ=255)
                                                          aataaCGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCa                                                                   >  1:243017/1‑140 (MQ=255)
                                                             aaCGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGa                                                                >  2:828402/1‑140 (MQ=255)
                                                             aaCGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGa                                                                >  2:328481/1‑140 (MQ=255)
                                                              aCGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGAc                                                               <  1:328481/140‑1 (MQ=255)
                                                               cgcgTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACt                                                              >  1:260748/1‑140 (MQ=255)
                                                                 cgTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACttc                                                            >  1:105023/1‑139 (MQ=255)
                                                                 cgTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTa                                                            >  1:336183/1‑140 (MQ=255)
                                                                   ttcttcACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTAcc                                                          >  1:845129/1‑140 (MQ=255)
                                                                   ttcttcACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTAcc                                                          <  1:828402/140‑1 (MQ=255)
                                                                     cttcACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCtt                                                        <  1:1195353/140‑1 (MQ=255)
                                                                     cttcACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCtt                                                        <  2:845129/140‑1 (MQ=255)
                                                                          ccTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCa                                                   <  2:1080719/140‑1 (MQ=255)
                                                                            tGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGt                                                 >  2:476397/1‑140 (MQ=255)
                                                                             gCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGtt                                                >  2:1244726/1‑140 (MQ=255)
                                                                              cGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTc                                               >  2:640671/1‑140 (MQ=255)
                                                                              cGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTc                                               >  1:101773/1‑140 (MQ=255)
                                                                               gACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCa                                              <  2:262269/140‑1 (MQ=255)
                                                                                  gggCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTg                                           <  2:1437733/140‑1 (MQ=255)
                                                                                  gggCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTg                                           <  2:336183/140‑1 (MQ=255)
                                                                                           cAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTtca                                  >  2:152090/1‑140 (MQ=255)
                                                                                           cAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTtca                                  <  2:526597/140‑1 (MQ=255)
                                                                                                cATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAAt                             <  1:1004978/140‑1 (MQ=255)
                                                                                                  tACAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGa                           <  2:259858/140‑1 (MQ=255)
                                                                                                    cAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGACt                         <  1:1086216/140‑1 (MQ=255)
                                                                                                    cAGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGACt                         <  2:675509/140‑1 (MQ=255)
                                                                                                    aaGCGCCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGACt                         <  2:13999/139‑1 (MQ=255)
                                                                                                       cgcCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGACtttt                      >  2:400911/1‑140 (MQ=255)
                                                                                                        gcCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGACttttt                     <  2:822862/140‑1 (MQ=255)
                                                                                                        gcCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGACt                         <  1:577292/136‑1 (MQ=255)
                                                                                                        gcCATATCTACCGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGACt                         >  2:577292/1‑136 (MQ=255)
                                                                                                                   cGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGACTTTTTTGTAGTctggt          >  2:451329/1‑139 (MQ=255)
                                                                                                                   cGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGACTTTTTTGTAGTctggc          <  2:843880/140‑1 (MQ=255)
                                                                                                                   cGCAGCAGCAAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTCCATCAATGACTTTTTTGTAGTctggc          <  2:977336/140‑1 (MQ=255)
                                                                                                                      agcagcaAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGACTTTTTTGTAGTctggctgg       >  1:35484/1‑140 (MQ=255)
                                                                                                                       gcagcaAGACCAGGATCACTGTCGACTAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGACTTTTTTGTAGTCTGGCTGGt      >  1:522767/1‑140 (MQ=255)
                                                                                                                       gcagcaAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGACTTTTTTGTAGTCTGGCTGGt      >  1:750761/1‑140 (MQ=255)
                                                                                                                       gcagcaAGACCAGGATCACTGTCGACCAGCGGACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGACTTTTTTGTAGTCTGGCTAGt      >  2:20005/1‑140 (MQ=255)
                                                                                                                        cagcaAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGACTTTTTTGTAGTCTGGCTGGTc     >  1:1450839/1‑140 (MQ=255)
                                                                                                                        cagcaAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGACTTTTTTGTAGTCTGGCTGGTc     >  1:364831/1‑140 (MQ=255)
                                                                                                                        cagcaAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGACTTTTTTGTAGTCTGGCTGGTc     >  1:715456/1‑140 (MQ=255)
                                                                                                                        cagcaAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGACTTTTTTGTAGTCTGGCTGGTc     >  2:1152943/1‑140 (MQ=255)
                                                                                                                        cagcaAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGAGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGACTTTTTTGTAGTCTGGCTGGTc     >  1:148199/1‑140 (MQ=255)
                                                                                                                           caAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGACTTTTTTGTAGTCTGGCTGGTCGaa  <  1:1370739/140‑1 (MQ=255)
                                                                                                                           caAGACCAGGATCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGACTTTTTTGTAGTCTGGCTGGTCGaa  <  1:1244726/140‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                
GACGCGCCCAGGTCAATGCGCGCTCCATCAGAACATCTGCGCCGTTACCAATCCAGGTAATAACGCGTTCTTCACCTGCGACGGGCAACTCCAGCGCATACAGCGCCATATCTACCGCAGCAGCAAGACCAGGAGCACTGTCGACCAGCGTACCATCAAGATCAAAAGCGACGCCGCGAATATCTTCAAACTTATTCATGACTTACCTTTGCCAGTTCACTGCGCATTTCATCAATGACTTTTTTGTAGTCTGGCTGGTCGAA  >  NC_000913/3514191‑3514453

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A