Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A15 F48 I1 R1	115	87.5	3003888	99.1%	2976853	139.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,654,208	A→G	K83R (AAG→AGG)	slp →	starvation lipoprotein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,654,208	0	A	G	100.0%	445.1 / NA	115	K83R (AAG→AGG)	slp	starvation lipoprotein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (62/53); total (62/53)

Only 100 of 118 total aligned reads displayed.

TTTTGTTGCTGTTCATAACCAGCCGGGGTTATATGTTGGTCAACAAGCGCGCTTTGGTGGGAAGGTTATCAACGTTATCAATGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAAGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTAATCACTTTGTTACCATCCTCGGCACCATTCAGGGTGAACAACCTGGCTTTATCAATAAA  >  NC_000913/3654071‑3654344

ttttGTTGCTGTTCATAACCAGCCGGGGTTATATGTTGGTCAACAAGCGCGCTTTGGTGGGAAGGTTATCAACGTTATCAATGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGc                                                                                                                                        <  1:124669/140‑1 (MQ=255)

 tttGTTGCTGTTCATAACCAGCCGGGGTTATATGTTGGTCAACAAGCGCGCTTTGGTGGGAAGGTTATCAACGTTATCAATGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGcc                                                                                                                                       <  1:229825/140‑1 (MQ=255)

           ttCATAACCAGCCGGGGTTATATGTTGGTCAACAAGCGCGCTTTGGTGGGAAGGTTATCAACGTTATCAATGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGaa                                                                                                                             <  1:183294/140‑1 (MQ=255)

            tCATAACCAGCCGGGGTTATATGTTGGTCAACAAGCGCGCTTTGGTGGGAAGGTTATCAACGTTATCAATGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAg                                                                                                                            <  2:1075379/140‑1 (MQ=255)

              aTAACCAGCCGGGGTTATATGTTGGTCAACAAGCGCGCTTTGGTGGGAAGGTTATCAACGTTATCAATGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGcc                                                                                                                          <  1:610832/140‑1 (MQ=255)

               tAACCAGCCGGGGTTATATGTTGGTCAACAAGCGCGCTTTGGTGGGAAGGTTATCAACGTTATCAATGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCa                                                                                                                         <  2:699707/140‑1 (MQ=255)

               tAACCAGCCGGGGTTATATGTTGGTCAACAAGCGCGCTTTGGTGGGAAGGTTATCAACGTTATCAATGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCa                                                                                                                         <  1:142458/140‑1 (MQ=255)

                     gCCGGGGTTATATGTTGGTCAACAAGCGCGCTTTGGTGGGAAGGTTATCAACGTTATCAATGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATc                                                                                                                   >  1:1076189/1‑140 (MQ=255)

                     gCCGGGGTTATATGTTGGTCAACAAGCGCGCTTTGGTGGGAAGGTTATCAACGTTATCAATGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATc                                                                                                                   >  1:1040655/1‑140 (MQ=255)

                     gCCGGGGTTATATGTTGGTCAACAAGCGCGCTTTGGTGGGAAGGTTATCAACGTTATCAATGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATc                                                                                                                   >  2:149925/1‑140 (MQ=255)

                     gCCGGGGTTATATGTTGGTCAACAAGCGCGCTTTGGTGGGAAGGTTATCAACGTTATCAATGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATc                                                                                                                   >  2:628793/1‑140 (MQ=255)

                     gCCGGGGTTATATGTTGGTCAACAAGCGCGCTTTGGTGGGAAGGTTATCAACGTTATCAATGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATc                                                                                                                   >  2:62298/1‑140 (MQ=255)

                     gCCGGGGTTATATGTTGGTCAACAAGCGCGCTTTGGTGGGAAGGTTATCAACGTTATCAATGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGACCTGATATTGAAGCCAACTATc                                                                                                                   >  2:328772/1‑140 (MQ=255)

                          ggTTATATGTTGGTCAACAAGCGCGCTTTGGTGGGAAGGTTATCAACGTTATCAATGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGc                                                                                                              >  2:1462752/1‑140 (MQ=255)

                                    tGGTCACCAAGCGCGCTTTGGTGGGATGGTTATCAACGTTATCTATGGCAAAACGGATACGTTGTTGGAAATCTGTGACTTATCGTTGGATAGCTATGCGCGGCCTGATATTGAAGACAACTATTAGTGCTGACTGTTCg                                                                                                    >  2:1243058/1‑140 (MQ=255)

                                    tGGTCAACAAGCGCGCTTTGGTGGGAAGGTTATCAACGTTATCAATGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCg                                                                                                    >  1:638179/1‑140 (MQ=255)

                                     ggTCAACAAGCGCGCTTTGGTGGGAAGGTTATCAACGTTATCAATGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGc                                                                                                   >  1:844141/1‑140 (MQ=255)

                                     ggTCAACAAGCGCGCTTTGGTGGGAAGGTTATCAACGTTATCAATGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGc                                                                                                   >  2:1302479/1‑140 (MQ=255)

                                      gTCAACAAGCGCGCTTTGGTGGGAAGGTTATCAACGTTATCAATGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGcc                                                                                                  >  1:174833/1‑140 (MQ=255)

                                      gTCAACAAGCGCGCTTTGGTGGGAAGGTTATCAACGTTATCAATGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGcc                                                                                                  >  1:226553/1‑140 (MQ=255)

                                      gTCAACAAGCGCGCTTTGGTGGGAAGGTTATCAACGTTATCAATGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGcc                                                                                                  >  2:277749/1‑140 (MQ=255)

                                         aacaaGCGCGCTTTGGTGGGAAGGTTATCAACGTTATCAATGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGa                                                                                               >  1:1323449/1‑140 (MQ=255)

                                         aacaaGCGCGCTTTGGTGGGAAGGTTATCAACGTTATCAATGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGa                                                                                               >  1:547155/1‑140 (MQ=255)

                                           caaGCGCGCTTTGGTGGGAAGGTTATCAACGTTATCAATGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACa                                                                                             >  2:1054237/1‑140 (MQ=255)

                                             aGCGCGCTTTGGTGGGAAGGTTATCAACGTTATCAATGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACaaa                                                                                           <  2:24682/140‑1 (MQ=255)

                                                gcgcTTTGGTGGGAAGGTTATCAACGTTATCAATGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCg                                                                                        <  1:640208/140‑1 (MQ=255)

                                                gcgcTTTGGTGGGAAGGTTATCAACGTTATCAATGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTAATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCg                                                                                        <  1:1497990/140‑1 (MQ=255)

                                                 cgcTTTGGTGGGAAGGTTATCAACGTTATCAATGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCgg                                                                                       <  1:1390593/140‑1 (MQ=255)

                                                  gcTTTGGTGGGAAGGTTATCAACGTTATCAATGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGc                                                                                      <  2:1372280/140‑1 (MQ=255)

                                                  gcTTTGGTGGGAAGGTTATCAACGTTATCAATGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGc                                                                                      <  2:1179643/140‑1 (MQ=255)

                                                   cTTTGGTGGGAAGGTTATCAACGTTATCAATGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCt                                                                                     >  1:1436155/1‑140 (MQ=255)

                                                            gAAGGTTATCAACGTTATCAATGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATc                                                                            <  1:767074/140‑1 (MQ=255)

                                                              aGGTTATCAACGTTATCAATGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCa                                                                          <  1:749803/140‑1 (MQ=255)

                                                              aGGTTATCAACGTTATCAATGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCa                                                                          <  1:149925/140‑1 (MQ=255)

                                                               ggTTATCAACGTTATCAATGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAg                                                                         <  2:1009009/140‑1 (MQ=255)

                                                                gTTATCAACGTTATCAATGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGt                                                                        >  2:1185874/1‑140 (MQ=255)

                                                                   aTCAACGTTATCAATGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTCCCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGTTTCCTTGATCCAGTGaa                                                                     <  2:1373741/140‑1 (MQ=255)

                                                                   aTCAACGTTATCAATGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGaa                                                                     <  1:542743/140‑1 (MQ=255)

                                                                   aTCAACGTTATCAATGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGaa                                                                     <  2:608693/140‑1 (MQ=255)

                                                                   aTCAACGTTATCAATGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGaa                                                                     <  2:1436155/140‑1 (MQ=255)

                                                                   aTCAACGTTATCAATGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGaa                                                                     >  2:35651/1‑140 (MQ=255)

                                                                      aaCGTTATCAATGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTa                                                                  >  1:1435942/1‑140 (MQ=255)

                                                                       aCGTTATCAATGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTAt                                                                 >  2:760768/1‑140 (MQ=255)

                                                                        cGTTATCAATGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATc                                                                >  1:465187/1‑140 (MQ=255)

                                                                          ttATCAATGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGt                                                              >  1:270814/1‑140 (MQ=255)

                                                                          ttATCAATGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGt                                                              >  2:505659/1‑140 (MQ=255)

                                                                           tATCAATGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTa                                                             >  1:978091/1‑140 (MQ=255)

                                                                           tATCAATGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTa                                                             >  1:849250/1‑140 (MQ=255)

                                                                              cAATGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTAATc                                                          <  2:474696/140‑1 (MQ=255)

                                                                               aaTGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTAATCa                                                         <  1:269912/140‑1 (MQ=255)

                                                                                 tGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTAATCACt                                                       <  2:19869/140‑1 (MQ=255)

                                                                                 tGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTAATCACt                                                       <  2:174833/140‑1 (MQ=255)

                                                                                 tGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTAATCACt                                                       <  1:62298/140‑1 (MQ=255)

                                                                                  ggCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTAATCACtt                                                      >  2:355061/1‑140 (MQ=255)

                                                                                   gCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTAATCACttt                                                     >  1:840783/1‑140 (MQ=255)

                                                                                            aTACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTAATCACTTTGTTACCATc                                            >  1:117055/1‑140 (MQ=255)

                                                                                              aCGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTAATCACTTTGTTACCATCCt                                          <  1:1302479/140‑1 (MQ=255)

                                                                                              aCGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTAATCACTTTGTTACCATCCt                                          >  2:1131532/1‑140 (MQ=255)

                                                                                               cGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTAATCACTTTGTTACCATCCTc                                         >  2:1172790/1‑140 (MQ=255)

                                                                                                gttgttAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTAATCACTTTGTTACCATCCTCg                                        <  1:390125/140‑1 (MQ=255)

                                                                                                  tgttAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGTTTCCTTGATCCAGTGAACTATCGTAATCGCTTTGTTACCATCCTCGGc                                      <  1:328772/140‑1 (MQ=255)

                                                                                                  tgttAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTAATCACTTTGTTACCATCCTCGGc                                      <  1:1185874/140‑1 (MQ=255)

                                                                                                  tgttAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTAATCACTTTGTTACCATCCTCGGc                                      <  2:1435942/140‑1 (MQ=255)

                                                                                                  tgttAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTAATCACTTTGTTACCATCCTCGGc                                      <  1:1172790/140‑1 (MQ=255)

                                                                                                   gttAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTAATCACTTTGTTACCATCCTCGGCa                                     <  2:1380827/140‑1 (MQ=255)

                                                                                                    ttAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTAATCACTTTGTTAcc                                               <  1:1234519/129‑1 (MQ=255)

                                                                                                    ttAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTAATCACTTTGTTACCATc                                            <  2:511083/132‑1 (MQ=255)

                                                                                                    ttAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTAATCACTTTGTTACCATc                                            >  1:511083/1‑132 (MQ=255)

                                                                                                    ttAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTAATCACTTTGTTACCATCCTCGGCAc                                    >  2:408491/1‑140 (MQ=255)

                                                                                                    ttAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCATGATCCAGTGAACTATCGTAATCACTTTGTTAcc                                               >  2:1234519/1‑129 (MQ=255)

                                                                                                     tAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTAATCACTTTGTTACCATCCTCGGCAcc                                   >  2:756192/1‑140 (MQ=255)

                                                                                                       gAAATCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTAATCACTTTGTTACCATCCTCGGCACCAt                                 <  2:1323449/140‑1 (MQ=255)

                                                                                                       aaaaTCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTAATCACTTTGTTACCATCCTCGGCACCAt                                 <  2:844141/139‑1 (MQ=255)

                                                                                                        aaaTCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTAATCACTTTGTTACCATCCTCGGCACCAtt                                <  1:355061/140‑1 (MQ=255)

                                                                                                          aTCTCTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTAATCACTTTGTTACCATCCTCGGCACCATTCa                              >  2:1092776/1‑140 (MQ=255)

                                                                                                           tctcTGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTAATCACTTTGTTACCATCCTCGGCACCATTCAg                             >  2:8890/1‑140 (MQ=255)

                                                                                                            ctctGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTAATCACTTTGTTACCATCCTCGGCACCATTCAgg                            <  1:386831/140‑1 (MQ=255)

                                                                                                               tGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTAATCACTTTGTTACCATCCTCGGCACCATTCAGGGTg                         <  2:215492/140‑1 (MQ=255)

                                                                                                               tGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTAATCACTTTGTTACCATCCTCGGCACCATTCAGGGTg                         <  2:638179/140‑1 (MQ=255)

                                                                                                               tGTATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTAATCACTTTGTTACCATCCTCGGCACCATTCAGGGTg                         >  2:344055/1‑140 (MQ=255)

                                                                                                                 tATTACCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTAATCACTTTGTTACCATCCTCGGCACCATTCAGGGTGaa                       >  1:1493357/1‑140 (MQ=255)

                                                                                                                     aCCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTAATCACTTTGTTACCATCCTCGGCACCATTCAGGGTGaacaac                   <  1:628977/140‑1 (MQ=255)

                                                                                                                     aCCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTAATCACTTTGTTACCATCCTCGGCACCATTCAGGGTGaacaac                   <  2:840783/140‑1 (MQ=255)

                                                                                                                     aCCGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTAATCACTTTGTTACCATCCTCGGCACCATTCAGGGTGaacaac                   <  1:35651/140‑1 (MQ=255)

                                                                                                                      ccGTTGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTAATCACTTTGTTACCATCCTCGGCACCATTCAGGGTGAACAAcc                  >  1:327153/1‑140 (MQ=255)

                                                                                                                         ttGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTAATCACTTTGTTACCATCCTCGGCACCATTCAGGGTGaa                       >  1:1477749/1‑132 (MQ=255)

                                                                                                                         ttGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTAATCACTTTGTTACCATCCTCGGCACCATTCAGGGTGAACAACCTgg               >  1:1424787/1‑140 (MQ=255)

                                                                                                                         ttGGATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTAATCACTTTGTTACCATCCTCGGCACCATTCAGGGTGAACAACCTgg               >  1:71660/1‑140 (MQ=255)

                                                                                                                           ggATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTAATCACTTTGTTACCATCCTCGGCACCATTCAGGGTGAACAACCTGGCt             >  2:60302/1‑140 (MQ=255)

                                                                                                                           ggATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTAATCACTTTGTTACCATCCTCGGCACCATTCAGGGTGAACAACCTGGCt             >  1:299004/1‑140 (MQ=255)

                                                                                                                           ggATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTAATCACTTTGTTACCATCCTCGGCACCATTCAGGGTGAACAACCTGGCt             >  2:1456116/1‑140 (MQ=255)

                                                                                                                           ggATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTAATCACTTTGTTACCATCCTCGGCACCATTCAGGGTGAACAACCTGGCt             >  1:1095613/1‑140 (MQ=255)

                                                                                                                            gATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTAATCACTTTGTTACCATCCTCGGCACCATTCAGGGTGAACAACCTGGCtt            <  2:117055/140‑1 (MQ=255)

                                                                                                                            gATAGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTAATCACTTTGTTACCATCCTCGGCACCATTCAGGGTGAACAACCTGGCtt            <  2:327153/140‑1 (MQ=255)

                                                                                                                               aGCTATGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTAATCACTTTGTTACCATCCTCGGCACCATTCAGGGTGAACAACCTGGCTTTAt         <  1:1380216/140‑1 (MQ=255)

                                                                                                                               aGCTATGCGAAGCCTGATATTGAAGTCAGCTAGCAGGGCTGACTGCTCGCCAGACAAAGCGGCTTCATTGATCCAGTGAAATATCGTAATCACTATGGTACCATCTTCGGCATCAGTAAGAGTGAACAAACTGGATTGAt         <  2:1276530/140‑1 (MQ=255)

                                                                                                                                    tGCGAGGCCTGATATTGAAGCCTACTATCAGGGCCGACTGCTCGCCAAACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTAATCACTTTGTTACCATCCTCGGCACCATTCAGGGTGAACAACCTGGCTTTATCAATa    <  1:1255172/140‑1 (MQ=255)

                                                                                                                                    tGCGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTAATCACTTTGTTACCATCCTCGGCACCATTCAGGGTGAACAACCTGGCTTTATCAATa    >  2:1421468/1‑140 (MQ=255)

                                                                                                                                      cGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTAATCACTTTGTTACCATCCTCGGCACCATTCAGGGTGAACAACCTGGCTTTATCAATaaa  <  1:505659/140‑1 (MQ=255)

                                                                                                                                      cGAGGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCCTCCTTGATCCAGTGAACTATCGTAATCACTTTGTTACCATCCTCGGCACCATTCAGGGTGAACAACCTGGCTTTATCAATaaa  >  2:434532/1‑140 (MQ=255)

TTTTGTTGCTGTTCATAACCAGCCGGGGTTATATGTTGGTCAACAAGCGCGCTTTGGTGGGAAGGTTATCAACGTTATCAATGGCAAAACGGATACGTTGTTAGAAATCTCTGTATTACCGTTGGATAGCTATGCGAAGCCTGATATTGAAGCCAACTATCAGGGCCGACTGCTCGCCAGACAAAGCGGCTTCCTTGATCCAGTGAACTATCGTAATCACTTTGTTACCATCCTCGGCACCATTCAGGGTGAACAACCTGGCTTTATCAATAAA  >  NC_000913/3654071‑3654344

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A