Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A6 F48 I1 R1	61	74.3	2613450	99.1%	2589928	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,656,343	C→A	intergenic (‑51/+65)	hdeB ← / ← hdeA	periplasmic acid stress chaperone/HdeA monomer, chaperone active form

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,656,343	0	C	A	100.0%	391.2 / NA	108	intergenic (‑51/+65)	hdeB/hdeA	periplasmic acid stress chaperone/HdeA monomer, chaperone active form
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (51/57); total (51/57)

Only 100 of 113 total aligned reads displayed.

CCAACGCAGATTGTGCGTTCACCAGTGACAAAGCCGCTACAGCGCCCATAAAAATAAACGCTTTACGGAGAGATGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGCTTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATATCTTTCTTAATTTTGTCCCATTCGCCTTTAACTTTATCTTTAAAGTTGGCTTGTTTATCCTGAGT  >  NC_000913/3656208‑3656479

ccAACGCAGATTGTGCGTTCACCAGTGACAAAGCCGCTACAGCGCCCATAAAAATAAACGCTTTACGGAGAGATGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGAtttt                                                                                                                                      >  1:688538/1‑140 (MQ=255)

ccAACGCAGATTGTGCGTTCACCAGGGACAAAGCCGCTACAGCGCCCATAAAAATAAACGCTTTACGGAGAGATGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGAtttt                                                                                                                                      >  2:315571/1‑140 (MQ=255)

      cAGATTGTGCGTTCACCAGTGACAAAGCCGCTACAGCGCCCATAAAAATAAACGCTTTACGGAGAGATGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAaagaa                                                                                                                                <  2:138184/140‑1 (MQ=255)

       aGATTGTGCGTTCACCAGTGACAAAGCCGCTACAGCGCCCATAAAAATAAACGCTTTACGGAGAGATGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAaagaag                                                                                                                               <  1:672510/140‑1 (MQ=255)

       aGATTGTGCGTTCACCAGTGACAAAGCCGCTACAGCGCCCATAAAAATAAACGCTTTACGGAGAGATGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAaagaag                                                                                                                               <  1:268540/140‑1 (MQ=255)

       aGATTGTGCGTTCACCAGTGACAAAGCCGCTACAGCGCCCATAAAAATAAACGCTTTACGGAGAGATGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAaagaag                                                                                                                               <  2:900285/140‑1 (MQ=255)

       aGATTGTGCGTTCACCAGTGACAAAGCCGCTACAGCGCCCATAAAAATAAACGCTTTACGGAGAGATGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAaagaag                                                                                                                               <  2:243219/140‑1 (MQ=255)

       aGATTGTGCGTTCACCAGTGACAAAGCCGCTACAGCGCCCATAAAAATAAACGCTTTACGGAGAGATGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAaagaag                                                                                                                               <  2:903768/140‑1 (MQ=255)

       aGATTGTGCGTTCACCAGTGACAAAGCCGCTACAGCGCCCATAAAAATAAACGCTTTACGGAGAGATGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAaagaag                                                                                                                               <  1:471929/140‑1 (MQ=255)

       aGATTGTGCGTTCACCAGTGACAAAGCCGCTACAGCGCCCATAAAAATAAACGCTTTACGGAGAGATGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAaagaag                                                                                                                               <  2:885019/140‑1 (MQ=255)

       aGATTGTGCGTTCACCAGTGACAAAGCCGCTACAGCGCCCATAAAAATAAACGCTTTACGGAGAGATGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAaagaag                                                                                                                               <  1:512556/140‑1 (MQ=255)

       aGATTGTGCGTTCACCAGTGACAAAGCCGCTACAGCGCCCATAAAAATAAACGCTTTACGGAGAGATGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAaagaag                                                                                                                               <  2:664127/140‑1 (MQ=255)

                 ttCACCAGTGACAAAGCCGCTACAGCGCCCATAAAAATAAACGCTTTACGGAGAGATGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGc                                                                                                                     <  2:412077/140‑1 (MQ=255)

                   cACCAGTGACAAAGCCGCTACAGCGCCCATAAAAATAAACGCTTTACGGAGAGATGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCt                                                                                                                   >  1:1242648/1‑140 (MQ=255)

                   cACCAGTGACAAAGCCGCTACAGCGCCCATAAAAATAAACGCTTTACGGAGAGATGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCt                                                                                                                   >  2:681002/1‑140 (MQ=255)

                    aCCAGTGACAAAGCCGCTACAGCGCCCATAAAAATAAACGCTTTACGGAGAGATGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTg                                                                                                                  >  1:781325/1‑140 (MQ=255)

                    aCCAGTGACAAAGCCGCTACAGCGCCCATAAAAATAAACGCTTTACGGAGAGATGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTg                                                                                                                  >  1:254174/1‑140 (MQ=255)

                      cAGTGACAAAGCCGCTACAGCGCCCATAAAAATAAACGCTTTACGGATAGATGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGtt                                                                                                                <  2:770486/140‑1 (MQ=255)

                        gTGACAAAGCCGCTACAGCGCCCATAAAAATAAACGCTTTACTGAGAGATGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCa                                                                                                              <  1:465730/140‑1 (MQ=255)

                        gTGACAAAGCCGCTACAGCGCCCATAAAAATAAACGCTTTACGGAGAGATGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCa                                                                                                              <  1:274351/140‑1 (MQ=255)

                        gTGACAAAGCCGCTACAGCGCCCATAAAAATAAACGCTTTACGGAGAGATGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCa                                                                                                              <  1:74140/140‑1 (MQ=255)

                         tGACAAAGCCGCTACAGCGCCCATAAAAATAAACGCTTTACGGAGAGATGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCaa                                                                                                             >  1:797130/1‑140 (MQ=255)

                              aaGCCGCTACAGCGCCCATAAAAATAAACGCTTTACGGAGAGATGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGc                                                                                                        >  2:727914/1‑140 (MQ=255)

                               aGCCGCTACAGCGCCCATAAAAATAAACGCTTTACGGAGAGATGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCa                                                                                                       <  2:894175/140‑1 (MQ=255)

                                gCCGCTACAGCGCCCATAAAAATAAACGCTTTACGGAGAGATGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCaa                                                                                                      >  1:253571/1‑140 (MQ=255)

                                gCCGCTACAGCGCCCATAAAAATAAACGCTTTACGGAGAGATGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCaa                                                                                                      <  2:654664/140‑1 (MQ=255)

                                gCCGCTACAGCGCCCATAAAAATAAACGCTTTACGGAGAGATGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCaa                                                                                                      >  2:498621/1‑140 (MQ=255)

                                  cGCTACAGCGCCCATAAAAATAAACGCTTTACGGAGAGATGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTTATTTTAAAGAAGATATTCCGGTCTGTTCAATATGCAAgg                                                                                                    <  1:853509/140‑1 (MQ=255)

                                  cGCTACAGCGCCCATAAAAATAAACGCTTTACGGAGAGATGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAgg                                                                                                    >  1:283299/1‑140 (MQ=255)

                                   gCTACAGCGCCCATAAAAATAAACGCTTTACGGAGAGATGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGa                                                                                                   >  1:83950/1‑140 (MQ=255)

                                    cTACAGCGCCCATAAAAATAAACGCTTTACGGAGAGATGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGaa                                                                                                  <  2:254174/140‑1 (MQ=255)

                                     tACAGCGCCCATAAAAATAAACGCTTTACGGAGAGATGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGaat                                                                                                 >  2:125780/1‑139 (MQ=255)

                                     tACAGCGCCCATAAAAATAAACGCTTTACGGAGAGATGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAg                                                                                                 >  1:824382/1‑140 (MQ=255)

                                       cAGCGCCCATAAAAATAAACGCTTTACGGAGAGATGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTa                                                                                               <  2:781325/140‑1 (MQ=255)

                                           gcCCATAAAAATAAACGCTTTACGGAGAGATGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGAt                                                                                           >  1:125726/1‑140 (MQ=255)

                                            cccATAAAAATAAACGCTTTACGGAGAGATGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATg                                                                                          >  1:298071/1‑140 (MQ=255)

                                             ccATAAAAATAAACGCTTTACGGAGAGATGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGt                                                                                         <  1:675999/140‑1 (MQ=255)

                                              cATAAAAATAAACGCTTTACGGAGAGATGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTa                                                                                        <  1:90357/140‑1 (MQ=255)

                                               aTAAAAATAAACGCTTTACGGAGAGATGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTaa                                                                                       >  1:1078140/1‑140 (MQ=255)

                                                 aaaaaTAAACGCTTTACGGAGAGATGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACg                                                                                     >  1:858260/1‑140 (MQ=255)

                                                       aaaCGCTTTACGGAGAGATGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTcc                                                                               <  1:681002/140‑1 (MQ=255)

                                                          cGCTTTACGGAGAGATGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCgg                                                                            <  1:1266590/140‑1 (MQ=255)

                                                          cGCTTTACGGAGAGATGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCgg                                                                            <  2:298071/140‑1 (MQ=255)

                                                          cGCTTTACGGAGAGATGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCgg                                                                            <  1:125780/140‑1 (MQ=255)

                                                            cTTTACGGAGAGATGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGaa                                                                          <  2:1078140/140‑1 (MQ=255)

                                                              ttACGGAGAGATGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAAtt                                                                        >  1:241776/1‑140 (MQ=255)

                                                                     gagaTGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATAtc                                                                 <  1:727914/140‑1 (MQ=255)

                                                                     gagaTGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATAtc                                                                 <  1:1222992/140‑1 (MQ=255)

                                                                      agaTGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATAtct                                                                >  1:1260776/1‑140 (MQ=255)

                                                                        aTGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATAtcttt                                                              >  2:633682/1‑140 (MQ=255)

                                                                          gAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATAtctttct                                                            <  1:498621/140‑1 (MQ=255)

                                                                               atTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATATCTTTCTTAAtt                                                       <  2:797130/140‑1 (MQ=255)

                                                                                ttCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATATCTTTCTTAAttt                                                      >  2:420643/1‑140 (MQ=255)

                                                                                ttCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATATCTTTCTTAAttt                                                      >  1:1111748/1‑140 (MQ=255)

                                                                                  cATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATATCTTTCTTAAttttt                                                    >  2:455597/1‑139 (MQ=255)

                                                                                  cATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATATCTTTCTTAATTTTg                                                    >  1:958547/1‑140 (MQ=255)

                                                                                  cATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATATCTTTCTTAATTTTg                                                    <  1:315571/140‑1 (MQ=255)

                                                                                  cATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATATCTTTCTTAATTTTg                                                    >  1:197463/1‑140 (MQ=255)

                                                                                         tAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATATCTTTCTTAATTTTGTCCCAtt                                             <  2:688538/140‑1 (MQ=255)

                                                                                         tAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATATCTTTCTTAATTTTGTCCCAtt                                             <  2:1260776/140‑1 (MQ=255)

                                                                                         tAACCCATTCAATATAGAGATTATATATGAACAGGAGGAAGAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTCCGATGTAACGCATTCCCGGAATTACATATCTTTCTTAATTTTGTCCCAtt                                             <  1:1070890/140‑1 (MQ=255)

                                                                                             ccATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATATCTTTCTTAATTTTGTCCCATTCGcc                                         <  2:241776/140‑1 (MQ=255)

                                                                                               aTTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATATCTTTCTTAATTTTGTCCCATTCGCCtt                                       >  2:555105/1‑140 (MQ=255)

                                                                                                 tCAATATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATATCTTTCTTAATTTTGTCCCATTCGCCTTTa                                     >  1:975522/1‑140 (MQ=255)

                                                                                                   aaTATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATATCTTTCTTAATTTTGTCCCATTCGCCTTTAAc                                   >  1:1027184/1‑140 (MQ=255)

                                                                                                   aaTATAGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATATCTTTCTTAATTTTGTCCCATTCGCCTTTAAc                                   >  2:100701/1‑140 (MQ=255)

                                                                                                     tataGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATATCTTTCTTAATTTTGTCCCATTCGCCTTTAACtt                                 <  2:283299/140‑1 (MQ=255)

                                                                                                      ataGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATATCTTTCTTAATTTTGTCCCATTCGCCTTTAACttt                                <  2:824382/140‑1 (MQ=255)

                                                                                                      ataGAGATTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATATCTTTCTTAATTTTGTCCCATTCGCCTTTAACttt                                <  2:253571/140‑1 (MQ=255)

                                                                                                          agaTTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATATCTTTCTTAATTTTGTCCCATTCGCCTTTAACttt                                >  2:1120493/1‑136 (MQ=255)

                                                                                                          agaTTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATATCTTTCTTAATTTTGTCCCATTCGCCTTTAACttt                                <  1:1120493/136‑1 (MQ=255)

                                                                                                          agaTTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATATCTTTCTTAATTTTGTCCCATTCGCCTTTAACTTTATCt                            >  2:34207/1‑140 (MQ=255)

                                                                                                           gaTTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATATCTTTCTTAATTTTGTCCCATTCGCCTTTAACTTTATCtt                           >  2:1216139/1‑140 (MQ=255)

                                                                                                           gaTTATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATATCTTTCTTAATTTTGTCCCATTCGCCTTTAACTTTATCtt                           >  1:324796/1‑140 (MQ=255)

                                                                                                             ttATATATGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATATCTTTCTTAATTTTGTCCCATTCGCCTTTAACTTTATCTTTa                         >  1:668530/1‑140 (MQ=255)

                                                                                                               atatatGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATATCTTTCTTAATTTTGTCCCATTCGCCTTTAACTTTATCTTaaaa                       >  1:1174641/1‑140 (MQ=255)

                                                                                                               atatatGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATATCTTTCTTAATTTTGTCCCATTCGCCTTTAACTTTATCTTTaaa                       >  2:1149414/1‑140 (MQ=255)

                                                                                                               atatatGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATATCTTTCTTAATTTTGTCCCATTCGCCTTTAACTTTATCTTTaaa                       >  1:907381/1‑140 (MQ=255)

                                                                                                               atatatGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATATCTTTCTTAATTTTGTCCCATTCGCCTTTAACTTTATCTTTaaa                       >  1:44705/1‑140 (MQ=255)

                                                                                                                    tGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATATCTTTCTTAATTTTGTCCCATTCGCCTTTAACTTTATCTTTAAAGTTgg                  <  2:607843/140‑1 (MQ=255)

                                                                                                                    tGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATATCTTTCTTAATTTTGTCCCATTCGCCTTTAACTTTATCTTTAAAGTTgg                  <  1:420643/140‑1 (MQ=255)

                                                                                                                    tGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATATCTTTCTTAATTTTGTCCCATTCGCCTTTAACTTTATCTTTAAAGTTgg                  <  2:577506/140‑1 (MQ=255)

                                                                                                                    tGAACAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATATCTTTCTTAATTTTGTCCCATTCGCCTTTAACTTTATCTTTAAAGTTgg                  <  2:1242648/140‑1 (MQ=255)

                                                                                                                    agAACAGGAGGAATAGCTGATTTGAAAGAAGATATTCCGGCCTGATCAAAATGCCAGGAAGTACGGTGTACCGCATTCCCGGACTTACATATCTTTCATAATTTTGACCCATTCGCCTTTATCTATATCTTTAAAGTTgg                  <  2:460744/139‑1 (MQ=255)

                                                                                                                      aaCAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATATCTTTCTTAATTTTGTCCCATTCGCCTTTAACTTTATCTTTAAAGTTGGCt                >  1:1203972/1‑140 (MQ=255)

                                                                                                                      aaCAGGAGGAATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATATCTTTCTTAATTTTGTCCCATTCGCCTTTAACTTTATCTTTAAAGTTGGCt                >  1:1294633/1‑140 (MQ=255)

                                                                                                                          ggaggaATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATATCTTTCTTAATTTTGTCCCATTCGCCTTTAACTTTATCTTTAAAGTTGGCTTGtt            >  2:237359/1‑140 (MQ=255)

                                                                                                                           gaggaATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATATCTTTCTTAATTTTGTCCCATTCGCCTTTAACTTTATCTTTAAAGTTGGCTTGttt           >  2:1237778/1‑140 (MQ=255)

                                                                                                                              gaATAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATATCTTTCTTAATTTTGTCCCATTCGCCTTTAACTTTATCTTTAAAGTTGGCTTGTTTATc        <  1:633682/140‑1 (MQ=255)

                                                                                                                                aTAGCTGATTTTAAAGAAGATATTTCGGCCTGTTCAATATGCAAGGAAGTACGATGTAGCGCATTCCCTGAATTACATATCTTTCTTAATTTTGTCCCATTCGCCTTTAACTTAATCTTTAAAGTTGGCTTGTTTATCCt      <  2:247309/140‑1 (MQ=255)

                                                                                                                                aTAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATATCTTTCTTAATTTTGTCCCATTCGCCTTTAACTTTATCTTTAAAGTTGGCTTGTTTATCCt      <  2:958547/140‑1 (MQ=255)

                                                                                                                                aTAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATATCTTTCTTAATTTTGTCCCATTCGCCTTTAACTTTATCTTTAAAGTTGGCTTGTTTATCCt      >  2:976866/1‑140 (MQ=255)

                                                                                                                                aTAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATATCTTTCTTAATTTTGTCCCATTCGCCTTTAACTTTATCTTTAAAGTTGGCTTGTTTATCCt      >  2:478625/1‑140 (MQ=255)

                                                                                                                                aTAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATATCTTTCTTAATTTTGTCCCATTCGCCTTTAACTTTATCTTTAAAGTTGGCTTGTTTATCCt      <  2:324796/140‑1 (MQ=255)

                                                                                                                                aTAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATATCTTTCTTAATTTTGTCCCATTCGCCTTTAACTTTATCTTTAAAGTTGGCTTGTTTATCCt      <  1:962927/140‑1 (MQ=255)

                                                                                                                                aTAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATATCTTTCTTAATTTTGTCCCATTCGCCTTTAACTTTATCTTTAAAGTTGGCTTGTTTATCCt      <  1:795717/140‑1 (MQ=255)

                                                                                                                                aTAGCTGATTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATATCTTTCTTAATTTTGTCCCATTCGCCTTTAACTTTATCTTTAAAGTTGGCTTGTTTATCCt      <  1:478625/140‑1 (MQ=255)

                                                                                                                                   gctgatTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATATCTTTCTTAATTTTGTCCCATTCGCCTTTAACTTTATCTTTAAAGTTGGCTTGTTTATCCTGat   >  2:602094/1‑139 (MQ=255)

                                                                                                                                   gctgatTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATATCTTTCTTAATTTTGTCCCATTCGCCTTTAACTTTATCTTTAAAGTTGGCTTGTTTATCCTGAg   >  1:875863/1‑140 (MQ=255)

                                                                                                                                    ctgatTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATATCTTTCTTAATTTTGTCCCATTCGCCTTTAACTTTATCTTTAAAGTTGGCTTGTTTATCCTGAGt  >  2:340744/1‑140 (MQ=255)

CCAACGCAGATTGTGCGTTCACCAGTGACAAAGCCGCTACAGCGCCCATAAAAATAAACGCTTTACGGAGAGATGAAATATTCATTTTGTAACCCATTCAATATAGAGATTATATATGAACAGGAGGAATAGCTGCTTTTAAAGAAGATATTCCGGCCTGTTCAATATGCAAGGAAGTACGATGTAACGCATTCCCGGAATTACATATCTTTCTTAATTTTGTCCCATTCGCCTTTAACTTTATCTTTAAAGTTGGCTTGTTTATCCTGAGT  >  NC_000913/3656208‑3656479

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A