Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A15 F48 I1 R1 115 87.5 3003888 99.1% 2976853 139.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,924,436 C→A G400C (GGT→TGT)  mnmG ← 5‑carboxymethylaminomethyluridine‑tRNA synthase subunit MnmG

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,924,4360CA100.0% 241.4 / NA 68G400C (GGT→TGT) mnmG5‑carboxymethylaminomethyluridine‑tRNA synthase subunit MnmG
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (41/27);  total (41/27)

ATCCGCATTATCTTCGCGTAGCATCAGACGATATTCTGCGCGCGAAGTAAACATACGATACGGTTCTTTGGTTCCTAAAGTGCACAGGTCATCAACTAGTACGCCGAGATACGCCTGAGAACGTGCCGGAGCCCAACCTTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGCTTCTTCGTAACCGGTAGTGCCGTTAATCTGACCAGCAAAGAACAGCCCCTGGATAAACTTGCTCTCCAGCGTCGG  >  NC_000913/3924299‑3924571
                                                                                                                                         |                                                                                                                                       
aTCCGCATTATCTTCGCGTAGCATCAGACGATATTCTGCGCGCGAAGTAAACATACGATACGGTTCTTTGGTTCCTAAAGTGCACAGGTCATCAACTAGTACGCCGAGATACGCCTGAGAACGTGCCGGAGCCCAACatt                                                                                                                                       >  1:466347/1‑140 (MQ=255)
aTCCGCATTATCTTCGCGTAGCATCAGACGATATTCTGCGCGCGAAGTAAACATACGATACGGTTCTTTGGTTCCTAAAGTGCACAGGTCATCAACTAGTACGCCGAGATACGCCTGAGAACGTGCCGGAGCCCAACatt                                                                                                                                       >  2:1453620/1‑140 (MQ=255)
      aTTATCTTCGCGTAGCATCAGACGATATTCTGCGCGCGAAGTAAACATACGATACGGTTCTTTGGTTCCTAAAGTGCACAGGTCATCAACTAGTACGCCGAGATACGCCTGAGAACGTGCCGGAGCCCAACATTCTTTGt                                                                                                                                 >  1:518527/1‑140 (MQ=255)
             tCGCGTAGCATCAGACGATATTCTGCGCGCGAAGTAAACATACGATACGGTTCTTTGGTTCCTAAAGTGCACAGGTCATCAACTAGTACGCCGAGATACGCCTGAGAACGTGCCGGAGCCCAACATTCTTTGTCAGcaga                                                                                                                          <  1:1453620/140‑1 (MQ=255)
               gcgTAGCATCAGACGATATTCTGCGCGCGAAGTAAACATACGATACGGTTCTTTGGTTCCTAAAGTGCACAGGTCATCAACTAGTACGCCGAGATACGCCTGAGAACGTGCCGGAGCCCAACATTCTTTGTCAGcagaca                                                                                                                        >  1:1025255/1‑140 (MQ=255)
                      attaGACGATATTCTGCGCGCGAAGTAAACATACGATACGGTTCTTTGGTTCCTAAAGTGCACAGGTCATCAACTAGTACGCCGAGATACGCCTGAGAACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGc                                                                                                                 <  2:39602/137‑1 (MQ=255)
                      aTCAGACGATATTCTGCGCGCGAAGTAAACATACGATACGGTTCTTTGGTTCCTAAAGTGCACAGGTCATCAACTAGTACGCCGAGATACGCCTGAGAACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGc                                                                                                                 <  2:1493189/140‑1 (MQ=255)
                      aTCAGACGATATTCTGCGCGCGAAGTAAACATACGATACGGTTCTTTGGTTCCTAAAGTGCACAGGTCATCAACTAGTACGCCGAGATACGCCTGAGAACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGc                                                                                                                 <  2:874274/140‑1 (MQ=255)
                       tCAGACGATATTCTGCGCGCGAAGTAAACATACGATACGGTTCTTTGGTTCCTAAAGTGCACAGGTCATCAACTAGTACGCCGAGATACGCCTGAGAACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCa                                                                                                                <  2:518527/140‑1 (MQ=255)
                         aGACGATATTCTGCGCGCGAAGTAAACATACGATACGGTTCTTTGGTTCCTAAAGTGCACAGGTCATCAACTAGTACGCCGAGATACGCCTGAGAACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGc                                                                                                              <  2:466347/140‑1 (MQ=255)
                                  tCTGCGCGCGAAGTAAACATACGATACGGTTCTTTGGTTCCTAAAGTGCACAGGTCATCAACTAGTACGCCGAGATACGCCTGAGAACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGAcc                                                                                                     >  1:1069860/1‑140 (MQ=255)
                                    tGCGCGCGAAGTAAACATACGATACGGTTCTTTGGTTCCTAAAGTGCACAGGTCATCAACTAGTACGCCGAGATACGCCTGAGAACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCgg                                                                                                   <  2:1126715/140‑1 (MQ=255)
                                     gcgcgcGAAGTAAACATACGATACGGTTCTTTGGTTCCTAAAGTGCACAGGTCATCAACTAGTACGCCGAGATACGCCTGAGAACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGc                                                                                                  >  1:1122246/1‑140 (MQ=255)
                                     gcgcgcGAAGTAAACATACGATACGGTTCTTTGGTTCCTAAAGTGCACAGGTCATCAACTAGTACGCCGAGATACGCCTGAGAACGTGCCGGAGCCCAACATTCCTTTTCCGCAGACACACGGGAAGCGGTAAAACCGGc                                                                                                  >  2:1269359/1‑140 (MQ=255)
                                       gcgcgAAGTAAACATACGATACGGTTCTTTGGTTCCTAAAGTGCACAGGTCATCAACTAGTACGCCGAGATACGCCTGAGAACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCa                                                                                                >  2:1376830/1‑140 (MQ=255)
                                       gcgcgAAGTAAACATACGATACGGTTCTTTGGTTCCTAAAGTGCACAGGTCATCAACTAGTACGCCGAGATACGCCTGAGAACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCa                                                                                                >  1:23653/1‑140 (MQ=255)
                                                aaaCATACGATACGGTTCTTTGGTTCCTAAAGTGCACAGGTCATCAACTAGTACGCCGAGATACGCCTTAGAACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGAGTTAAGATCGGCCAGCAAACCtt                                                                                       <  2:1114746/140‑1 (MQ=255)
                                                         atacgGTTCTTTGGTTCCTAAAGTGCACAGGTCATCAACTAGTACGCCGAGATACGCCTGAGAACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCgg                                                                              >  2:1388427/1‑140 (MQ=255)
                                                         atacgGTTCTTTGGTTCCTAAAGTGCACAGGTCATCAACTAGTACGCCGAGATACGCCTGAGAACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCgg                                                                              >  2:481961/1‑140 (MQ=255)
                                                             ggTTCTTTGGTTCCTAAAGTGCACAGGTCATCAACTAGTACGCCGAGATACGCCTGAGAACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGcttc                                                                          >  1:1308476/1‑140 (MQ=255)
                                                               ttCTTTGGTTCCTAAAGTGCACAGGTCATCAACTAGTACGCCGAGATACGCCTGAGAACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGcttctt                                                                        >  2:1201364/1‑140 (MQ=255)
                                                               ttCTTTGGTTCCTAAAGTGCACAGGTCATCAACTAGTACGCCGAGATACGCCTGAGAACGTACCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGcttctt                                                                        >  1:1345386/1‑140 (MQ=255)
                                                                         ccTAAAGTGCACAGGTCATCAACTAGTACGCCGAGATACGCCTGAGAACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGCTTCTTCGTAACCGGt                                                              >  1:522848/1‑140 (MQ=255)
                                                                           aaaaGTGCACAGGTCATCAACTAGTACGCCGAGATACGCCTGAGAACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGCTTCTTCGTAACCGGTAg                                                            <  2:1122246/139‑1 (MQ=255)
                                                                                tGCACAGGTCATCAACTAGTACGCCGAGATACGCCTGAGAACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGCTTCTTCGTAACCGGTAGTGcct                                                       >  2:494445/1‑139 (MQ=255)
                                                                                tGCACAGGTCATCAACTAGTACGCCGAGATACGCCTGAGAACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGCTTCTTCGTAACCGGTAGTGCCg                                                       <  2:1424414/140‑1 (MQ=255)
                                                                                tGCACAGGTCATCAACTAGTACGCCGAGATACGCCTGAGAACGTACCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGCTTCTTCGTAACCGGTAGTGCCg                                                       <  2:1345386/140‑1 (MQ=255)
                                                                                  cacaGGTCATCAACTAGTACGCCGAGATACGCCTGAGAACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGCTTCTTCGTAACCGGTAGTGCCGtt                                                     >  2:293539/1‑140 (MQ=255)
                                                                                  cacaGGTCATCAACTAGTACGCCGAGATACGCCTGAGAACGGGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCACCAAACCTTGCGCAGCGGCTTCTTCGTAACCGGTAGTGCCGtt                                                     >  1:750856/1‑140 (MQ=255)
                                                                                   acaGGTCATCAACTAGTACGCCGAGATACGCCTGAGAACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACTTTGCGCAGCGGCTTCTTCGTAACCGGTAGTGCCGTTa                                                    >  1:554843/1‑140 (MQ=255)
                                                                                   acaGGTCATCAACTAGTACGCCGAGATACGCCTGAGAACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGCTTCTTCGTAACCGGTAGTGCCGTTa                                                    >  1:689376/1‑140 (MQ=255)
                                                                                       gTCATCAACTAGTACGCCGAGATACGCCTGAGAACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGCTTCTTCGTAACCGGTAGTGCCGTTAATCt                                                >  2:239548/1‑140 (MQ=255)
                                                                                       gTCATCAACTAGTACGCCGAGATACGCCTGAGAACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGCTTCTTCGTAACCGGTAGTGCCGTTAATCt                                                >  2:1392654/1‑140 (MQ=255)
                                                                                       gTCATCAACTAGTACGCCGAGATACGCCTGAGAACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGCTTCTTCGTAACCGGTAGTGCCGTTAATCt                                                >  1:1261573/1‑140 (MQ=255)
                                                                                       gTCATCAACTAGTACGCCGAGATACGCCTGAGAACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGCTTCTTCGTAACCGGTAGTGCCGTTAATCt                                                <  1:1376830/140‑1 (MQ=255)
                                                                                       gTCATCAACTAGTACGCCGAGATACGCCTGAGAACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGCTTCTTCGTAACCGGTAGTGCCGTTAATCt                                                >  1:847224/1‑140 (MQ=255)
                                                                                        tcatcaACTAGTACGCCGAGATACGCCTGAGAACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGCTTCTTCGTAACCGGTAGTGCCGTTAATCTg                                               <  2:522848/140‑1 (MQ=255)
                                                                                         catcaACTAGTACGCCGAGATACGCCTGAGAACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGCTTCTTCGTAACCGGTAGTGCCGTTAATCTGa                                              >  1:667322/1‑140 (MQ=255)
                                                                                          atcaACTAGTACGCCGAGATACGCCTGAGAACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGCTTCTTCGTAACCGGTAGTGCCGTTAATCTGAc                                             >  2:716354/1‑140 (MQ=255)
                                                                                          atcaACTAGTACGCCGAGATACGCCTGAGAACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGCTTCTTCGTAACCGGTAGTGCCGTTAATCTGAc                                             <  1:765683/140‑1 (MQ=255)
                                                                                          atcaACTAGTACGCCGAGATACGCCTGAGAACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGCTTCTTCGTAACCGGTAGTGCCGTTAATCTGAc                                             <  1:1388427/140‑1 (MQ=255)
                                                                                          atcaACTAGTACGCCGAGATACGCCTGAGAACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGCTTCTTCGTAACCGGTAGTGCCGTTAATCTGAc                                             <  1:1201364/140‑1 (MQ=255)
                                                                                          atcaACTAGTACGCCGAGATACGCCTGAGAACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGCTTCTTCGTAACCGGTAGTGCCGTTAATCTGAc                                             >  1:1186753/1‑140 (MQ=255)
                                                                                               atAGTACGCCGAGATACGCCTGAGAACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGCTTCTTCGTAACCGGTAGTGCCGTTAATCTGACCAGCa                                        <  2:68283/139‑1 (MQ=255)
                                                                                                 aGTACGCCGAGATACGCCTGAGAACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGCTTCTTCGTAACCGGTAGTGCCGTTAATCTGACCAGCaaa                                      >  1:1022063/1‑140 (MQ=255)
                                                                                                 aGTACGCCGAGATACGCCTGAGAACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGCTTCTTCGTAACCGGTAGTGCCGTTAATCTGACCAGCaaa                                      >  1:75880/1‑140 (MQ=255)
                                                                                                 aGTACGCCGAGATACGCCTGAGAACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGCTTCTTCGTAACCGGTAGTGCCGTTAATCTGACCAGCaaa                                      >  2:718358/1‑140 (MQ=255)
                                                                                                 aGTACGCCGAGATACGCCTGAGAACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGCTTCTTCGTAACCGGTAGTGCCGTTAATCTGACCAGCaaa                                      >  1:1230414/1‑140 (MQ=255)
                                                                                                 aGTACGCCGAGATACGCCTGAGAACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGCTTCTTCGTAACCGGTAGTGCCGTTAATCTGACCAGCa                                        <  2:272893/138‑1 (MQ=255)
                                                                                                 aGTACGCCGAGATACGCCTGAGAACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGCTTCTTCGTAACCGGTAGTGCCGTTAATCTGACCAGCa                                        >  1:272893/1‑138 (MQ=255)
                                                                                                    aCGCCGAGATACGCCTGAGAACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGCTTCTTCGTAACCGGTAGTGCCGTTAATCTGACCAGCAAAGaa                                   >  1:404114/1‑140 (MQ=255)
                                                                                                    aCGCCGAGATACGCCTGAGAACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGCTTCTTCGTAACCGGTAGTGCCGTTAATCTGACCAGCAAAGaa                                   >  2:644988/1‑140 (MQ=255)
                                                                                                     cGCCGAGATACGCCTGAGAACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGCTTCTTCGTAACCGGTAGTGCCGTTAATCTGACCAGCAAAGAAc                                  >  1:860182/1‑140 (MQ=255)
                                                                                                        cGAGATACGCCTGAGAACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGCTTCTTCGTAACCGGTAGTGCCGTTAATCTGACCAGCAAAGAACAGc                               >  1:1269014/1‑140 (MQ=255)
                                                                                                         gagaTACGCCTGAGAACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGCTTCTTCGTAACCGGTAGTGCCGTTAATCTGACCAGCAAAGAACAGcc                              >  2:176440/1‑140 (MQ=255)
                                                                                                          agaTACGCCTGAGAACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCAAGCAAACCTTGCGCAGCGGCTTCTTCGTAACCGGTAGTGCCGTTAATCTGACCAGCAAAGAACAGccc                             <  1:336750/140‑1 (MQ=255)
                                                                                                               cGCCTGAGAACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGCTTCTTCGTAACCGGTAGTGCCGTTAATCTGACCAGCAAAGAACAGCCCCTGGa                        <  2:1069860/140‑1 (MQ=255)
                                                                                                               cGCCTGAGAACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGCTTCTTCGTAACCGGTAGTGCCGTTAATCTGACCAGCAAAGAACAGCCCCTGGa                        <  2:847224/140‑1 (MQ=255)
                                                                                                                 ccTGAGAACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGCTTCTTCGTAACCGGTAGTGCCGTTAATCTGACCAGCAAAGAACAGCCCCTGGATa                      <  1:239548/140‑1 (MQ=255)
                                                                                                                    gagaACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGCTTCTTCGTAACCGGTAGTGCCGTTAATCTGACCAGCAAAGAACAGCCCCTGGATAAAc                   <  1:1392654/140‑1 (MQ=255)
                                                                                                                    gagaACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGCTTCTTCGTAACCGGTAGTGCCGTTAATCTGACCAGCAAAGAACAGCCCCTGGATAAAc                   <  2:689376/140‑1 (MQ=255)
                                                                                                                    gagaACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGCTTCTTCGTAACCGGTAGTGCCGTTAATCTGACCAGCAAAGAACAGCCCCTGGATAAAc                   >  1:174129/1‑140 (MQ=255)
                                                                                                                     agaACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGCTTCTTCGTAACCGGTAGTGCCGTTAATCTGACCAGCAAAGAACAGCCCCTGGATAAACt                  >  2:951725/1‑140 (MQ=255)
                                                                                                                     agaACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGCTTCTTCGTAACCGGTAGTGCCGTTAATCTGACCAGCAAAGAACAGCCCCTGGATAAACt                  >  1:1333649/1‑140 (MQ=255)
                                                                                                                      gaACGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGCTTCTTCGTAACCGGTAGTGCCGTTAATCTGACCAGCAAAGAACAGCCCCTGGATAAACtt                 >  2:378258/1‑140 (MQ=255)
                                                                                                                       aaCGTGCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGCTTCTTCGTAACCGGTAGTGCCGTTAATCTGACCAGCAAAGAACAGCCCCTGGATAAACTTg                <  1:644988/140‑1 (MQ=255)
                                                                                                                       aaCGTGCCGAGGCCAAACATACATTGTCAGCGGACAGGCGGGCGGCGTTAAGACCGGCCAGTAACCCTTGGGCAGCGGCTTCTTCGTAACCGGTCGTGCCGATAATCTAACCAGCAAAGAACAGCCCCTGGATCGACTTg                <  2:750856/140‑1 (MQ=255)
                                                                                                                            gCCGGAGCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGCTTCTTCGTAACCGGTAGTGCCGTTAATCTGACCAGCAAAGAACAGCCCCTGGATAAACTTGCtctc           >  1:237674/1‑140 (MQ=255)
                                                                                                                                  gCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGCTTCTTCGTAACCGGTAGTGCCGTTAATCTGACCAGCAAAGAACAGCCCCTGGATAAACTTGCTCTCCAGCGt     <  1:293539/140‑1 (MQ=255)
                                                                                                                                  gCCCAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGCTTCTTCGTAACCGGTAGTGCCGTTAATCTGACCAGCAAAGAACAGCCCCTGGATAAACTTGCTCTCCAGCGt     <  2:23653/140‑1 (MQ=255)
                                                                                                                                   cccAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGCTTCTTCGTAACCGGTAGTGCCGTTAATCTGACCAGCAAAGAACAGCCCCTGGATAAACTTGct              <  2:599903/130‑1 (MQ=255)
                                                                                                                                   cccAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGCTTCTTCGTAACCGGTAGTGCCGTTAATCTGACCAGCAAAGAACAGCCCCTGGATAAACTTGct              >  1:599903/1‑130 (MQ=255)
                                                                                                                                     cAACATTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGCTTCTTCGTAACCGGTAGTGCCGTTAATCTGACCAGCAAAGAACAGCCCCTGGATAAACTTGCTCTCCAGCGTCgg  >  2:660249/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                       
ATCCGCATTATCTTCGCGTAGCATCAGACGATATTCTGCGCGCGAAGTAAACATACGATACGGTTCTTTGGTTCCTAAAGTGCACAGGTCATCAACTAGTACGCCGAGATACGCCTGAGAACGTGCCGGAGCCCAACCTTCTTTGTCAGCAGACAGACGGGCAGCGTTAAGACCGGCCAGCAAACCTTGCGCAGCGGCTTCTTCGTAACCGGTAGTGCCGTTAATCTGACCAGCAAAGAACAGCCCCTGGATAAACTTGCTCTCCAGCGTCGG  >  NC_000913/3924299‑3924571

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A