Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A15 F48 I1 R1	115	87.5	3003888	99.1%	2976853	139.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,946,200	A→T	noncoding (2497/2904 nt)	rrlC →	23S ribosomal RNA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,946,200	0	A	T	100.0%	153.9 / NA	68	noncoding (2497/2904 nt)	rrlC	23S ribosomal RNA
Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (32/36); total (32/36)

AGTGATCCGGTGGTTCTGAATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTCCCTATCTGCCGTGGGCGCTG  >  NC_000913/3946091‑3946333

aGTGATCCGGTGGTTCTGAATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGc                                                                                                         <  2:709060/140‑1 (MQ=17)

     tCCGGTGGTTCTGAATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGaat                                                                                                    >  2:575155/1‑139 (MQ=17)

     tCCGGTGGTTCTGAATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAg                                                                                                    >  1:784797/1‑140 (MQ=17)

     tCCGGTGGTTCTGAATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAg                                                                                                    >  2:1340152/1‑140 (MQ=17)

     tCCGGTGGTTCTGAATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAg                                                                                                    >  1:1403390/1‑140 (MQ=17)

     tCCGGTGGTTCTGAATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAg                                                                                                    >  1:1466016/1‑140 (MQ=17)

      ccGGTGGTTCTGAATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGt                                                                                                   >  1:1094642/1‑140 (MQ=17)

       cGGTGGTTCTGAATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTa                                                                                                  <  1:1288926/140‑1 (MQ=18)

         gtggtTCTGTATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTa                                                                                                  >  2:1342001/1‑138 (MQ=17)

         gtggtTCTGAATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTa                                                                                                  <  1:1342001/138‑1 (MQ=18)

         gtggtTCTGAATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAgg                                                                                                >  1:217228/1‑140 (MQ=17)

          tggtTCTGAATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGt                                                                                               <  2:1382429/140‑1 (MQ=18)

          tggtTCTGAATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGt                                                                                               >  1:244577/1‑140 (MQ=17)

            gtTCTGAATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTcc                                                                                             >  2:38748/1‑140 (MQ=17)

             ttCTGAATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTccc                                                                                            <  1:842814/140‑1 (MQ=18)

             ttCTGAATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTccc                                                                                            <  2:205373/140‑1 (MQ=18)

             ttCTGAATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTccc                                                                                            <  2:817533/140‑1 (MQ=17)

             ttCTGAATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTccc                                                                                            <  2:347907/140‑1 (MQ=17)

             ttCTGAATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTccc                                                                                            <  1:366241/140‑1 (MQ=17)

                      gAAGGGCCATCGCTCAACGGATAAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATg                                                                                   >  2:940383/1‑140 (MQ=17)

                       aaGGGCCATCGCTCAACGGATAAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATgg                                                                                  >  2:572727/1‑140 (MQ=17)

                       aaGGGCCATCGCTCAACGGATAAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATgg                                                                                  >  2:465014/1‑140 (MQ=17)

                       aaGGGCCATCGCTCAACGGATAAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATgg                                                                                  >  2:1199052/1‑140 (MQ=17)

                              aTCGCTCAACGGATAAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCg                                                                           <  1:165719/140‑1 (MQ=17)

                              aTCGCTCAACGGATAAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCg                                                                           <  1:1344760/140‑1 (MQ=18)

                                          aTAAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTg                                                               >  1:1120360/1‑140 (MQ=17)

                                          aTAAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAATTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTg                                                               >  1:104290/1‑140 (MQ=17)

                                                   aCTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTTGCCATTTAAAGTGGTACGCGAg                                                      <  1:940383/140‑1 (MQ=12)

                                                   aCTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAg                                                      <  1:1245483/140‑1 (MQ=17)

                                                   aCTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAg                                                      <  1:995779/140‑1 (MQ=17)

                                                    ctctggggATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGc                                                     >  1:1308829/5‑140 (MQ=12)

                                                    cTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGc                                                     >  1:460743/1‑140 (MQ=17)

                                                    cTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGc                                                     <  2:244577/140‑1 (MQ=17)

                                                     tCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCt                                                    <  1:1088668/140‑1 (MQ=17)

                                                     tCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCt                                                    <  2:780868/140‑1 (MQ=17)

                                                       cGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTgg                                                  >  1:529493/1‑140 (MQ=17)

                                                          ggATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGtt                                               >  1:341642/1‑140 (MQ=17)

                                                             tAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAg                                            <  1:29956/140‑1 (MQ=17)

                                                               aCAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGaa                                          <  1:1248542/140‑1 (MQ=17)

                                                               aCAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGaa                                          >  2:162441/1‑140 (MQ=17)

                                                               aCAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGaa                                          <  2:438514/140‑1 (MQ=17)

                                                               aCAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGaa                                          <  2:1120360/140‑1 (MQ=17)

                                                                   gCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAAcgtc                                      >  2:776868/1‑140 (MQ=17)

                                                                    cTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAAcgtcg                                     >  2:634868/1‑140 (MQ=17)

                                                                      gATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAAcgtcgtt                                   >  2:1312081/1‑139 (MQ=17)

                                                                      gATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTg                                   >  2:743217/1‑140 (MQ=17)

                                                                       aTACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTga                                  <  1:572727/140‑1 (MQ=17)

                                                                        tACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTgag                                 <  2:1094642/140‑1 (MQ=17)

                                                                         aCCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTgaga                                <  1:836028/140‑1 (MQ=17)

                                                                          ccGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGAc                               <  2:943907/140‑1 (MQ=17)

                                                                             cccAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTgaga                                <  1:504096/136‑1 (MQ=17)

                                                                             cccAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTgaga                                >  2:504096/1‑136 (MQ=17)

                                                                             cccAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGt                            >  2:97728/1‑140 (MQ=17)

                                                                             cccAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGt                            >  1:349869/1‑140 (MQ=17)

                                                                             cccAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGt                            >  1:1302045/1‑140 (MQ=17)

                                                                             cccAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGGGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGt                            >  1:90309/1‑140 (MQ=17)

                                                                              ccAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCGTTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGtt                           <  1:899173/140‑1 (MQ=17)

                                                                              ccAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGtt                           <  2:529493/140‑1 (MQ=17)

                                                                              ccAAGAGTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACACGAGCTGGGTTTAGAACGTCGTGAGACAGtt                           <  2:1466016/140‑1 (MQ=17)

                                                                                 agagTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCgg                        >  1:673228/1‑140 (MQ=17)

                                                                                 agagTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCgg                        <  1:365586/140‑1 (MQ=17)

                                                                                  gagTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGt                       <  1:162441/140‑1 (MQ=17)

                                                                                   agTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTc                      <  1:97728/140‑1 (MQ=17)

                                                                                   agTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTc                      <  1:743217/140‑1 (MQ=17)

                                                                                   agTTCATATCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTc                      <  1:1199052/140‑1 (MQ=17)

                                                                                          atCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTCCCTATCt               <  2:104290/140‑1 (MQ=17)

                                                                                          atCGACGGCGGTGTTTGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTCCCTATCt               >  1:750395/1‑140 (MQ=17)

                                                                                                       tttGGCTCCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTCCCTATCTGCCGTGGGCGCTg  <  1:465014/140‑1 (MQ=17)

AGTGATCCGGTGGTTCTGAATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGAGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTCCCTATCTGCCGTGGGCGCTG  >  NC_000913/3946091‑3946333

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A