Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A15 F48 I1 R1 115 87.5 3003888 99.1% 2976853 139.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,110,043 C→A V38V (GTC→GTA)  cdh → CDP‑diacylglycerol diphosphatase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,110,0430CA98.5% 228.8 / NA 68V38V (GTC→GTA) cdhCDP‑diacylglycerol diphosphatase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base A (35/32);  minor base T (1/0);  total (36/32)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TCTTTGAGGTACAGGGAAAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGAAATTAACCGGTGAAGAGTCGGATACATTACGTAAGATTGTCCTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGCCATGTGCGGAAGTCAAACCCAATGCCGGATACGTGGTTTTAAAAGATCTTAATGGCCCACTGCAATATCTGTTGATGCCAACGTATCGTA  >  NC_000913/4109906‑4110179
                                                                                                                                         |                                                                                                                                        
tctTTGAGGTACAGGGAAAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGAAATTAACCGGTGAAGAGTCGGATACATTACGTAAGATTGTACt                                                                                                                                        >  1:1024602/1‑140 (MQ=255)
 ctTTGAGGTACAGGGAAAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGAAATTAACCGGTGAAGAGTCGGATACATTACGTAAGATTGTACtt                                                                                                                                       >  1:172917/1‑140 (MQ=255)
    tGAGGTACAGGGAAAAAAAGATGAAAAAGGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGAAATTAACCGGTGAAGAGTCGGATACATTACGTAAGATTGTACTTGAg                                                                                                                                    <  2:818167/140‑1 (MQ=255)
    tGAGGTACAGGGAAAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGAAATTAACCGGTGAAGAGTCGGATACATTACGTAAGATTGTACTTGAg                                                                                                                                    <  2:1024602/140‑1 (MQ=255)
     gAGGTACAGGGAAAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGAAATTAACCGGTGAAGAGTCGGATACATTACGTAAGATTGTACTTGAgg                                                                                                                                   <  2:270257/140‑1 (MQ=255)
      aGGTACAGGGAAAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGAAATTAACCGGTGAAGAGTCGGATACATTACGTAAGATTGTACTTGAGGa                                                                                                                                  >  2:1334309/1‑140 (MQ=255)
         tACAGGGAAAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGAAATTAACCGGTGAAGAGTCGGATACATTACGTAAGATTGTACTTGAGGAATg                                                                                                                               <  2:1168559/140‑1 (MQ=255)
         tACAGGGAAAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGAAATTAACCGGTGAAGAGTCGGATACATTACGTAAGATTGTACTTGAGGAATg                                                                                                                               >  2:47953/1‑140 (MQ=255)
            aGGGAAAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGAAATTAACCGGTGAAGAGTCGGATACATTACGTAAGATTGTACTTGAGGAATGttt                                                                                                                            >  1:125300/1‑140 (MQ=255)
            aGGGAAAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGAAATTAACCGGTGAAGAGTCGGATACATTACGTAAGATTGTACTTGAGGAATGttt                                                                                                                            >  2:1222872/1‑140 (MQ=255)
            aGGGAAAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGAAATTAACCGGTGAAGAGTCGGATACATTACGTAAGATTGTACTTGAGGAATGttt                                                                                                                            >  2:399778/1‑140 (MQ=255)
            aGGGAAAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGAAATTAACCGGTGAAGAGTCGGATACATTACGTAAGATTGTACTTGAGGAATGttt                                                                                                                            <  2:80486/140‑1 (MQ=255)
              ggAAAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGAAATTAACCGGTGAAGAGTCGGATACATTACGTAAGATTGTACTTGAGGAATGTTTGc                                                                                                                          >  1:126592/1‑140 (MQ=255)
                aaaaaaaGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATTGTTATCGCCGTTGTGGCTGCCGGTATTGGATACTGGAAATTAACCGGTGTAGAGTCGGATACATTACGTAAGTTTGTACTTTAGGAATGTTTGccc                                                                                                                        >  2:1236431/1‑140 (MQ=255)
                   aaaaGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGAAATTAACCGGTGAAGAGTCGGATACATTACGTAAGATTGTACTTGAGGAATGTTTGCCCAAt                                                                                                                     >  2:320364/1‑140 (MQ=255)
                    aaaGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGAAATTAACCGGTGAAGAGTCGGATACATTACGTAAGATTGTACTTGAGGAATGTTTGCCCAATc                                                                                                                    <  2:129554/140‑1 (MQ=255)
                         tGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGAAATTAACCGGTGAAGAGTCGGATACATTACGTAAGATTGTACTTGAGGAATGTTTGCCCAATcagcag                                                                                                               >  1:922464/1‑140 (MQ=255)
                           aaaaaaGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGAAATTAACCGGTGAAGAGTCGGATACATTACGTAAGATTGTACTTGAGGAATGTTTGCCCAATCAgcagca                                                                                                             <  1:1334309/140‑1 (MQ=255)
                                             tttttGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGAAATTAACCGGTGAAGAGTCGGATACATTACGTAAGATTGTACTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGcc                                                                                           <  2:306638/140‑1 (MQ=255)
                                               tttGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGAAATTAACCGGTGAAGAGTCGGATACATTACGTAAGATTGTACTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGCCAt                                                                                         <  2:126592/140‑1 (MQ=255)
                                                  ggTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGAAATTAACCGGTGAAGAGTCGGATACATTACGTAAGATTGTACTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGCCAtgtg                                                                                      >  1:1223743/1‑140 (MQ=255)
                                                   gTGATAATAATTATCGCAGTTGTGGCTTACGGTATTGGTTACTGGAAATTAACCGGTGAAGAGTAGGAAAAAATAAGTAAGATTGTACTTGAGGAATGTTTGCCCAATCATCAGCAAAAACAAAATCCTTCGCCATGTGc                                                                                     <  2:858896/140‑1 (MQ=255)
                                                    tgatgaTAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGAAATTAACCGGTGAAGAGTCGGATACATTACGTAAGATTGTACTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGCCATGTGCg                                                                                    <  2:922464/140‑1 (MQ=255)
                                                    tgatgaTAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGAAATTAACCGGTGAAGAGTCGGATACATTACGTAAGATTGTACTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGCCATGTGCg                                                                                    >  2:885534/1‑140 (MQ=255)
                                                     gatgatAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGAAATTAACCGGTGAAGAGTCGGATACATTACGTAAGATTGTACTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGCCATGTGCgg                                                                                   <  1:423732/140‑1 (MQ=255)
                                                     gatgatAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGAAATTAACCGGTGAAGAGTCGGATACATTACGTAAGATTGTACTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGCCATGTGCgg                                                                                   <  1:320364/140‑1 (MQ=255)
                                                       tgatAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGAAATTAACCGGTGAAGAGTTGGATACATTACGTAAGATTGTACTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGCCATGTGCGGaa                                                                                 >  1:1116539/1‑140 (MQ=255)
                                                           aGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGAAATTAACCGGTGAAGAGTCGGATACATTACGTAAGATTGTACTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGCCATGTGCGGAAGTCa                                                                             <  1:1236431/140‑1 (MQ=255)
                                                           aGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGAAATTAACCGGTGAAGAGTCGGATACATTACGTAAGATTGTACTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGCCATGTGCGGAAGTCa                                                                             <  2:980955/140‑1 (MQ=255)
                                                                tCGCCGTTGTGGCTGCCGGTATTGGTTACTGGAAATTAACCGGTGAAGAGTCGGATACATTACGTAAGATTGTACTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGCCATGTGCGGAAGTCAAAccc                                                                        >  1:529803/1‑140 (MQ=255)
                                                                  gCCGTTGTGGCTGCCGGTATTGGTTACTGGAAATTAACCGGTGAAGAGTCGGATACATTACGTAAGATTGTACTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGCCATGTGCGGAAGTCAAACCCaa                                                                      >  1:965919/1‑140 (MQ=255)
                                                                     gTTGTGGCTGCCGGTATTGGTTACTGGAAATTAACCGGTGAAGAGTCGGATACATTACGTAAGATTGTACTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGCCATGTGCGGAAGTCAAACCCAATGc                                                                   <  2:991457/140‑1 (MQ=255)
                                                                     gTTGTGGCTGCCGGTATTGGTTACTGGAAATTAACCGGTGAAGAGTCGGATACATTACGTAAGATTGTACTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGCCATGTGCGGAAGTCAAACCCAATGc                                                                   <  1:47953/140‑1 (MQ=255)
                                                                      ttGTGGCTGCCGGTATTGGTTACTGGAAATTAACCGGTGAAGAGTCGGATACATTACGTAAGATTGTACTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGCCATGTGCGGAAGTCAAACCCAATGcc                                                                  >  1:916516/1‑140 (MQ=255)
                                                                      ttGTGGCTGCCGGTATTGGTTACTGGAAATTAACCGGTGAAGAGTCGGATACATTACGTAAGATTGTACTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGCCATGTGCGGAAGTCAAACCCAATGcc                                                                  >  2:287933/1‑140 (MQ=255)
                                                                       tgtgGCTGCCGGTATTGGTTACTGGAAATTAACCGGTGAAGAGTCGGATACATTACGTAAGATTGTACTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGCCATGTGCGGAAGTCAAACCCAATGCCg                                                                 >  1:1137454/1‑140 (MQ=255)
                                                                       tgtgGCTGCCGGGATTGGTTACTGGAAATTAACCGGTGAAGAGTCGGATACATTACGTAAGATTGTACTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGCCATGTGCGGAAGTCAAACCCAATGCCg                                                                 >  1:515779/1‑140 (MQ=255)
                                                                        gtgGCTGCCGGTATTGGTTACTGGAAATTAACCGGTGAAGAGTCGGATACATTACGTAAGATTGTACTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGCCATGTGCGGAAGTCAAACCCAATGCCgg                                                                >  2:516917/1‑140 (MQ=255)
                                                                             tGCCGGTATTGGTTACTGGAAATTAACCGGTGAAGAGTCGGATACATTACGTAAGATTGTACTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGCCATGTGCGGAAGTCAAACCCAATGCCGGATACg                                                           <  2:172917/140‑1 (MQ=255)
                                                                              accGGTATTGGTTACTGGAAATTAACCGGTGAAGAGTCGGATACATTACGTAAGATTGTACTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGCCATGTGCGGAAGTCAAACCCAATGCCGGATACGt                                                          <  2:515779/139‑1 (MQ=255)
                                                                                cGGTATTGGTTACTGGAAATTAACCGGTGAAGAGTCGGATACATTACGTAAGATTGTACTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGCCATGTGCGGAAGTCAAACCCAATGCCGGATACGTgg                                                        >  2:863271/1‑140 (MQ=255)
                                                                                      tGGTTACTGGAAATTAACCGGTGAAGAGTCGGATACATTACGTAAGATTGTACTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGCCATGTGCGGAAGTCAAACCCAATGCCGGATACGTGGTTTTaa                                                  <  1:885534/140‑1 (MQ=255)
                                                                                             tGGAAATTAACCGGTGAAGAGTCGGATACATTACGTAAGATTGTACTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGCCATGTGCGGAAGTCAAACCCAATGCCGGATACGTGGTTTTAAAAGATCt                                           >  2:124682/1‑140 (MQ=255)
                                                                                             tGGAAATTAACCGGTGAAGAGTCGGATACATTACGTAAGATTGTACTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGCCATGTGCGGAAGTCAAACCCAATGCCGGATACGTGGTTTTAAAAGATCt                                           >  1:7909/1‑140 (MQ=255)
                                                                                               gAAATTAACCGGTGAAGAGTCGGATACATTACGTAAGATTGTACTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGCCATGTGCGGAAGTCAAACCCAATGCCGGATACGTGGTTTTAAAAGATCTTa                                         <  1:124682/140‑1 (MQ=255)
                                                                                                  aTTAACCGGTGAAGAGTCGGATACATTACGTAAGATTGTACTTGAGGAATGTTTGCCCAATCAGCTGCAAAATCAAAATCCTTCGCCATGTGCGGAAGTCAAACCCAATGCCGGATACGTGGTTTTAAAAGATCTTAATg                                      <  2:1223743/140‑1 (MQ=255)
                                                                                                  aTTAACCGGTGAAGAGTCGGATACATTACGTAAGATTGTACTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGCCATGTGCGGAAGTCAAACCCAATGCCGGATACGTGGTTTTAAAAGATCTTAATg                                      >  1:786643/1‑140 (MQ=255)
                                                                                                  aTTAACCGGTGAAGAGTCGGATACATTACGTAAGATTGTACTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGCCATGTGCGGAAGTCAAACCCAATGCCGGATACGTGGTTTTAAAAGATCTTAATg                                      >  1:891523/1‑140 (MQ=255)
                                                                                                  aTTAACCGGTGAAGAGTCGGATACATTACGTAAGATTGTACTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGCCATGTGCGGAAGTCAAACCCAATGCCGGATACGTGGTTTTAAAAGATCTTAATg                                      >  2:151681/1‑140 (MQ=255)
                                                                                                     aaCCGGTGAAGAGTCGGATACATTACGTAAGATTGTACTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGCCATGTGCGGAAGTCAAACCCAATGCCGGATACGTGGTTTTAAAAGATCTTAATGGcc                                   <  1:999468/140‑1 (MQ=255)
                                                                                                     aaCCGGTGAAGAGTCGGATACATTACGTAAGATTGTACTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGCCATGTGCGGAAGTCAAACCCAATGCCGGATACGTGGTTTTAAAAGATCTTAATGGcc                                   <  2:125300/140‑1 (MQ=255)
                                                                                                      aCCGGTGAAGAGTCGGATACATTACGTAAGATTGTACTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGCCATGTGCGGAAGTCAAACCCAATGCCGGATACGTGGTTTTAAAAGATCTTAATGGccc                                  <  2:965919/140‑1 (MQ=255)
                                                                                                      aCCGGTGAAGAGTCGGATACATTACGTAAGATTGTACTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGCCATGTGCGGAAGTCAAACCCAATGCCGGATACGTGGTTTTAAAAGATCTTAATGGccc                                  <  2:557341/140‑1 (MQ=255)
                                                                                                      aCCGGTGAAGAGTCGGATACATTACGTAAGATTGTACTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGCCATGTGCGGAAGTCAAACCCAATGCCGGATACGTGGTTTTAAAAGATCTTAATGGccc                                  <  2:7909/140‑1 (MQ=255)
                                                                                                        cGGTGAAGAGTCGGATACATTACGTAAGATTGTACTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGCCATGTGCGGAAGTCAAACCCAATGCCGGATACGTGGTTTTAAAAGATCTTAATGGCCCAc                                <  1:863271/140‑1 (MQ=255)
                                                                                                                  tCGGATACATTACGTAAGATTGTACTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGCCATGTGCGGAAGTCAAACCCAATGCCGGATACGTGGTTTTAAAAGATCTTAATGGCCCACTGCAATATCt                      >  2:1445621/1‑140 (MQ=255)
                                                                                                                  tCGGATACATTACGTAAGAGTGTTCTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGCCATGTGCGGAAGTCAAACCCAATGCCGGATACGTGGTTTTAAAAGATCTTAATGGCCCACTGCAATATCt                      >  2:1067724/1‑140 (MQ=255)
                                                                                                                    ggATACATTACGTAAGATTGTACTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGCCATGTGCGGAAGTCAAACCCAATGCCGGATACGTGGTTTTAAAAGATCTTAATGGCCCACTGCAATATCTGt                    >  2:554679/1‑140 (MQ=255)
                                                                                                                     gATACATTACGTAAGATTGTACTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGCCATGTGCGGAAGTCAAACCCAATGCCGGATACGTGGTTTTAAAAGATCTTAATGGCCCACTGCAATATCTGtt                   >  1:838090/1‑140 (MQ=255)
                                                                                                                            tACGTAAGATTGTACTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGCCATGTGCGGAAGTCAAACCCAATGCCGGATACGTGGTTTTAAAAGATCTTAATGGCCCACTGCAATATCTGTTGATGCCa            <  1:1067724/140‑1 (MQ=255)
                                                                                                                                tAAGATTGTACTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGCCATGTGCGGAAGTCAAACCCAATGCCGGATACGTGGTTTTAAAAGATCTTAATGGCCCACTGCAATATCTGTTGATGCCAAcgt        <  2:786643/140‑1 (MQ=255)
                                                                                                                                tAAGATTGTACTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGCCATGTGCGGAAGTCAAACCCAATGCCGGATACGTGGTTTTAAAAGATCTTAATGGCCCACTGCAATATCTGTTGATGCCAAcgt        >  2:33953/1‑140 (MQ=255)
                                                                                                                                tAAGATTGTACTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGCCATGTGCGGAAGTCAAACCCAATGCCGGATACGTGGTTTTAAAAGATCTTAATGGCCCACTGCAATATCTGTTGATGCCAAcgt        >  2:1172749/1‑140 (MQ=255)
                                                                                                                                 aaGATTGTACTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGCCATGTGCGGAAGTCAAACCCAATGCCGGATACGTGGTTTTAAAAGATCTTAATGGCCCACTGCAATATCTGTTGATGCCAAcgta       <  1:33953/140‑1 (MQ=255)
                                                                                                                                   gATTGTACTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGCCATGTGCGGAAGTCAAACCCAATGCCGGATACATGGTTTTAAAAGATCTTAATGGCCCACTGCAATATCTGTTGATGCCAAcgtatc     >  1:946813/1‑140 (MQ=255)
                                                                                                                                    aTTGTACTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGCCATGTGCGGAAGTCAAACCCAATGCCGGATACGTGGTTTTAAAAGATCTTAATGGCCCACTGCAATATCTGTTGATGCCAAcgtatct    >  2:475643/1‑139 (MQ=255)
                                                                                                                                    aTTGTACTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGCCATGTGCGGAAGTCAAACCCAATGCCGGATACGTGGTTTTAAAAGATCTTAATGGCCCACTGCAATATCTGTTGATGCCAAcgtatcg    >  2:1041715/1‑140 (MQ=255)
                                                                                                                                     ttGTACTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGCCATGTGCGGAAGTCAAACCCAATGCCGGATACGTGGTTTTAAAAGATCTTAATGGCCCACTGCAATATCTGTTGATGCCAAcgtatcgt   <  2:838090/140‑1 (MQ=255)
                                                                                                                                     ttGTACTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGCCATGTGCGGAAGTCAAACCCAATGCCGGATACGTGGTTTTAAAAGATCTTAATGGCCCACTGCAATATCTGTTGATGCCAAcgtatcgt   <  2:891523/140‑1 (MQ=255)
                                                                                                                                      tGTACTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGCCATGTGCGGAAGTCAAACCCAATGCCGGATACGTGGTTTTAAAAGATCTTAATGGCCCACTGCAATATCTGTTGATGCCAAcgtatcgta  >  2:1385258/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                        
TCTTTGAGGTACAGGGAAAAAAAGATGAAAAAAGCGGGTCTTCTTTTTTTGGTGATGATAGTTATCGCCGTTGTGGCTGCCGGTATTGGTTACTGGAAATTAACCGGTGAAGAGTCGGATACATTACGTAAGATTGTCCTTGAGGAATGTTTGCCCAATCAGCAGCAAAATCAAAATCCTTCGCCATGTGCGGAAGTCAAACCCAATGCCGGATACGTGGTTTTAAAAGATCTTAATGGCCCACTGCAATATCTGTTGATGCCAACGTATCGTA  >  NC_000913/4109906‑4110179

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A