Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A18 F48 I1 R1	70	76.3	2572620	98.7%	2539175	139.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,110,467	C→A	R180S (CGT→AGT)	cdh →	CDP‑diacylglycerol diphosphatase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,110,467	0	C	A	100.0%	313.0 / NA	88	R180S (CGT→AGT)	cdh	CDP‑diacylglycerol diphosphatase
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (44/44); total (44/44)

TACGCAAAACCATTTTCATATTCATATCTCTTGTATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGACGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCT  >  NC_000913/4110331‑4110603

tACGCAAAACCATTTTCATATTCATATCTCTTGTATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCATCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTc                                                                                                                                       >  2:966016/1‑140 (MQ=255)

             tttCATATTCATATCTCTTGTATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAg                                                                                                                          <  1:1071172/140‑1 (MQ=255)

             tttCATATTCATATCTCTTGTATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAg                                                                                                                          <  1:1034194/140‑1 (MQ=255)

             tttCATATTCATATCTCTTGTATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAg                                                                                                                          <  1:693210/140‑1 (MQ=255)

             tttCATATTCATATCTCTTGTATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAg                                                                                                                          >  2:590552/1‑140 (MQ=255)

             tttCATATTCATATCTCTTGTATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAg                                                                                                                          <  2:834501/140‑1 (MQ=255)

             tttCATATTCATATCTCTTGTATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAg                                                                                                                          <  2:923297/140‑1 (MQ=255)

             tttCATATTCATATCTCTTGTATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAg                                                                                                                          <  2:85226/140‑1 (MQ=255)

                 atattcatatCTCTTGTATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGaa                                                                                                                      <  2:717177/140‑1 (MQ=255)

                  tattcatatCTCTTGTATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAAc                                                                                                                     <  1:3321/140‑1 (MQ=255)

                  tattcatatCTCTTGTATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAAc                                                                                                                     <  2:317665/140‑1 (MQ=255)

                  aattcatatCTCTTGTATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAAc                                                                                                                     <  2:1094504/139‑1 (MQ=255)

                       atatCTCTTGTATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTa                                                                                                                <  2:1210490/140‑1 (MQ=255)

                       atatCTCTTGTATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCCAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTa                                                                                                                <  2:951126/140‑1 (MQ=255)

                            tctTGTATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACg                                                                                                           <  1:296239/140‑1 (MQ=255)

                            tctTGTATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACg                                                                                                           <  2:510189/140‑1 (MQ=255)

                              ttGTATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATATCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCa                                                                                                         <  1:218827/140‑1 (MQ=255)

                               tGTATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAg                                                                                                        <  1:251699/140‑1 (MQ=255)

                               tGTATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAg                                                                                                        >  2:218425/1‑140 (MQ=255)

                               tGTATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAg                                                                                                        <  2:683112/140‑1 (MQ=255)

                               tGTATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAg                                                                                                        >  2:669266/1‑140 (MQ=255)

                               tGTATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAg                                                                                                        >  2:910958/1‑140 (MQ=255)

                               tGTATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAg                                                                                                        <  1:966016/140‑1 (MQ=255)

                                 tATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGcc                                                                                                      >  2:843512/1‑140 (MQ=255)

                                     cGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCAtt                                                                                                  >  1:828676/1‑140 (MQ=255)

                                      gTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCAttt                                                                                                 >  1:638165/1‑140 (MQ=255)

                                      gTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCAttt                                                                                                 >  1:607101/1‑140 (MQ=255)

                                        ccTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTat                                                                                               >  1:761927/1‑140 (MQ=255)

                                        ccTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTat                                                                                               >  1:181079/1‑140 (MQ=255)

                                           gATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTatgat                                                                                            >  1:392812/1‑140 (MQ=255)

                                           gATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTatgat                                                                                            >  1:248644/1‑140 (MQ=255)

                                           gATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTatgat                                                                                            >  2:319136/1‑140 (MQ=255)

                                            aTGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTatgatg                                                                                           <  1:590552/140‑1 (MQ=255)

                                            aTGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTatgatg                                                                                           <  2:688218/140‑1 (MQ=255)

                                            aTGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTatgatg                                                                                           <  1:732787/140‑1 (MQ=255)

                                            aTGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTatgatg                                                                                           <  2:607101/140‑1 (MQ=255)

                                               tgCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTg                                                                                        >  1:986130/1‑140 (MQ=255)

                                                 cgcAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGc                                                                                      >  1:208883/1‑140 (MQ=255)

                                                  gcAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCa                                                                                     <  1:218425/140‑1 (MQ=255)

                                                      aCAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCagaag                                                                                 >  1:954683/1‑140 (MQ=255)

                                                         gCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGaagaag                                                                              <  2:501210/140‑1 (MQ=255)

                                                         gCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGaagaag                                                                              >  1:78547/1‑140 (MQ=255)

                                                                aaCAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGATTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGa                                                                       >  1:535360/1‑140 (MQ=255)

                                                                  cAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAgg                                                                     >  1:887436/1‑140 (MQ=255)

                                                                  cAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAgg                                                                     >  1:141033/1‑140 (MQ=255)

                                                                  cAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAgg                                                                     >  1:773971/1‑140 (MQ=255)

                                                                  aaaTCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAgg                                                                     <  2:392812/139‑1 (MQ=255)

                                                                    aTCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGgcg                                                                   >  2:1016561/1‑140 (MQ=255)

                                                                    aTCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGgcg                                                                   >  1:1228271/1‑140 (MQ=255)

                                                                    aTCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGgcg                                                                   <  1:331375/140‑1 (MQ=255)

                                                                     acTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGgcgc                                                                  <  2:986130/139‑1 (MQ=255)

                                                                       tGGCGAACATCAGCAGCCGCTTGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCgg                                                                >  1:882799/1‑140 (MQ=255)

                                                                       tGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCgg                                                                >  2:872622/1‑140 (MQ=255)

                                                                        ggCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCggg                                                               <  1:164427/140‑1 (MQ=255)

                                                                         gCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGa                                                              >  2:1087833/1‑140 (MQ=255)

                                                                          cGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGaa                                                             >  1:525721/1‑140 (MQ=255)

                                                                               aTCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCATAAGAAGTACCTGAGGCGCGGGAACatat                                                        >  2:1215259/1‑140 (MQ=255)

                                                                                       ccGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGACGCt                                                <  1:929923/140‑1 (MQ=255)

                                                                                           tGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGACGCTACgg                                            >  1:455593/1‑140 (MQ=255)

                                                                                            ggTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGACGCTACggg                                           <  1:172650/140‑1 (MQ=255)

                                                                                              ttGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGACGCTACGGGCt                                         <  1:669266/140‑1 (MQ=255)

                                                                                                 ccACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGACGCTACGGGCTGGc                                      <  1:958728/140‑1 (MQ=255)

                                                                                                 ccACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGACGCTACGGGCTGGc                                      <  1:437565/140‑1 (MQ=255)

                                                                                                       ccAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGACGCTACGGGCTGGCGATGGt                                >  1:1097256/1‑140 (MQ=255)

                                                                                                       ccAGGTGGTTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGACGCTACGGGCTGGCGATGGt                                >  1:768054/1‑140 (MQ=255)

                                                                                                          ggtggtTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGTGGCGCGGGAACATATGGGACGCTACGGGCTGGCGATGGTACg                             >  1:888006/1‑140 (MQ=255)

                                                                                                           gtggtTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGACGCTACGGGCTGGCGATGGTACgg                            >  2:364820/1‑140 (MQ=255)

                                                                                                            tggtTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGACGCTACGGGCTGGCGATGGTACGGc                           <  1:319136/140‑1 (MQ=255)

                                                                                                             ggtTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGACGCTACGGGCTGGCGATGGTACGGCa                          <  2:828676/140‑1 (MQ=255)

                                                                                                              gtTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGACGCTACGGGCTGGCGATGGTACGGCag                         <  2:525721/140‑1 (MQ=255)

                                                                                                              gtTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGACGCTACGGGCTGGCGATGGTACGGCag                         <  2:248644/140‑1 (MQ=255)

                                                                                                              gtTTGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGACGCTACGGGCTGGCGATGGTACGGCag                         <  2:181079/140‑1 (MQ=255)

                                                                                                                 tGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGACGCTACGGGCTGGCGATGGTACGGCAGAGt                      >  1:374449/1‑140 (MQ=255)

                                                                                                                 tGCGCGGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGACGCTACGGGCTGGCGATGGTACGGCAGAGt                      >  1:1113779/1‑140 (MQ=255)

                                                                                                                    gcgGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGACGCTACGGGCTGGCGATGGTACGGCAGAGTGAt                   >  1:446357/1‑140 (MQ=255)

                                                                                                                     ggggCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAG‑CCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGACGCTACGGGCTGGCGATGGTACGGCAGAGTGATaa                 <  1:493100/139‑1 (MQ=255)

                                                                                                                     cgGGCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGACGCTACGGGCTGGCGATGGTACGGCAGAGTGATa                  >  1:424941/1‑140 (MQ=255)

                                                                                                                     cgGACATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGGACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGACGCTACGGGCTGGCGATGGTACGGCAGAGTGATa                  >  2:448244/1‑140 (MQ=255)

                                                                                                                      gggCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGACGCTACGGGCTGGCGATGGTACGGCAGAGTGATaa                 <  2:263018/140‑1 (MQ=255)

                                                                                                                      gggCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGACGCTACGGGCTGGCGATGGTACGGCAGAGTGATaa                 <  2:1097256/140‑1 (MQ=255)

                                                                                                                        gCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGACGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACt               <  2:773971/140‑1 (MQ=255)

                                                                                                                        gCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGACGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACt               <  2:954683/140‑1 (MQ=255)

                                                                                                                        gCATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGACGCTACGGGCTGGCGA‑GGTACGGCAGAGTGATAACTc              >  1:191542/1‑140 (MQ=255)

                                                                                                                         cATGAATACCTGGCGAGTCGGGTAACGGAAAGCGAGCTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGACGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTc              >  1:781962/1‑140 (MQ=255)

                                                                                                                           tGAATACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCATCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGACGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCAt            <  2:761927/140‑1 (MQ=255)

                                                                                                                             aaTACCTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGACGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCAttt          >  1:563770/1‑140 (MQ=255)

                                                                                                                                  cTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGACGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTAtt     >  1:683587/1‑140 (MQ=255)

                                                                                                                                  cTGGCGAGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGACGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTAtt     >  1:75915/1‑140 (MQ=255)

                                                                                                                                     gcgaGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGACGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCt  >  2:129225/1‑140 (MQ=255)

TACGCAAAACCATTTTCATATTCATATCTCTTGTATTCGTCCTGATGTGCGCAAACAGCTGGATAACAATCTGGCGAACATCAGCAGCCGCTGGTTGCCACTGCCAGGTGGTTTGCGCGGGCATGAATACCTGGCGCGTCGGGTAACGGAAAGCGAACTGGTACAACGCAGCCCATTTATGATGCTGGCAGAAGAAGTACCTGAGGCGCGGGAACATATGGGACGCTACGGGCTGGCGATGGTACGGCAGAGTGATAACTCATTTGTATTGCT  >  NC_000913/4110331‑4110603

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A