Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F48 I1 R1 508 125.6 4303852 99.2% 4269421 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,113,756 C→A P239P (CCG→CCT)  fpr ← flavodoxin/ferredoxin‑NADP(+) reductase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,113,7560CA100.0% 511.1 / NA 147P239P (CCG→CCT) fprflavodoxin/ferredoxin‑NADP(+) reductase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (72/75);  total (72/75)

Only 100 of 150 total aligned reads displayed.

TGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCCGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCACATGGCTGGTTTCTTTATTCATCGGCAGGCCAATCGTGCTTTCCA  >  NC_000913/4113619‑4113892
                                                                                                                                         |                                                                                                                                        
  gTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTc                                                                                                                                      >  2:1380197/1‑140 (MQ=255)
   tcatcatcaCTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCg                                                                                                                                     <  1:520941/140‑1 (MQ=255)
     atcatcaCTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGc                                                                                                                                   <  1:1104241/140‑1 (MQ=255)
     atcatcaCTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGc                                                                                                                                   <  1:433455/140‑1 (MQ=255)
      tcatcaCTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGAAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCg                                                                                                                                  >  2:87061/1‑140 (MQ=255)
          caCTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGt                                                                                                                              <  1:1808626/140‑1 (MQ=255)
          caCTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGt                                                                                                                              >  2:1957059/1‑140 (MQ=255)
            cTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTaa                                                                                                                            <  1:129501/140‑1 (MQ=255)
              cATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAAt                                                                                                                          <  1:76177/140‑1 (MQ=255)
                       aCCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCa                                                                                                                 >  2:1502242/1‑140 (MQ=255)
                           tttGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCa                                                                                                                 >  1:997605/1‑136 (MQ=255)
                           tttGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTg                                                                                                             >  1:267799/1‑140 (MQ=255)
                           tttGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTg                                                                                                             >  1:1887040/1‑140 (MQ=255)
                           tttGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTg                                                                                                             >  1:1783392/1‑140 (MQ=255)
                           tttGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAACGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTg                                                                                                             >  1:650959/1‑140 (MQ=255)
                             tGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGcc                                                                                                           <  2:159213/140‑1 (MQ=255)
                             tGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGcc                                                                                                           <  2:754687/140‑1 (MQ=255)
                               aTGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCgg                                                                                                         <  2:1337218/140‑1 (MQ=255)
                                 gCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGt                                                                                                       <  1:338766/140‑1 (MQ=255)
                                     gCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTctct                                                                                                   >  1:2015331/1‑140 (MQ=255)
                                      cATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCtt                                                                                                  >  2:978354/1‑140 (MQ=255)
                                        tatCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTc                                                                                                <  2:1183502/140‑1 (MQ=255)
                                        tatCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTc                                                                                                <  1:398024/140‑1 (MQ=255)
                                             cgGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCaa                                                                                           <  2:438978/140‑1 (MQ=255)
                                             cgGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCaa                                                                                           <  1:780135/140‑1 (MQ=255)
                                             cgGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCaa                                                                                           <  2:1543823/140‑1 (MQ=255)
                                             cgGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCaa                                                                                           >  1:117039/1‑140 (MQ=255)
                                             cgGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCaa                                                                                           >  2:780135/1‑140 (MQ=255)
                                             cgGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCaa                                                                                           <  1:489151/140‑1 (MQ=255)
                                             cgGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCaa                                                                                           <  1:447604/140‑1 (MQ=255)
                                             cgGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCaa                                                                                           <  1:1380197/140‑1 (MQ=255)
                                             cgGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCaa                                                                                           <  1:1502242/140‑1 (MQ=255)
                                             cgGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCaa                                                                                           <  1:1960360/140‑1 (MQ=255)
                                             cgGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCaa                                                                                           <  1:2083752/140‑1 (MQ=255)
                                                  tgatCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACtgtt                                                                                      <  2:1283284/140‑1 (MQ=255)
                                                    atCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACtgttgt                                                                                    >  2:1118065/1‑140 (MQ=255)
                                                     tCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTtgtg                                                                                   >  1:88798/1‑140 (MQ=255)
                                                          aaGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATcg                                                                              <  2:480076/140‑1 (MQ=255)
                                                              tGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCa                                                                          <  2:2147653/140‑1 (MQ=255)
                                                              tGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCa                                                                          >  2:657481/1‑140 (MQ=255)
                                                              tGAGTGCGGATTTGCTCATCGTGCCGTTTATCG‑‑AAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATcg                                                                              <  1:1347375/134‑1 (MQ=255)
                                                              tGAGTGCGGATTTGCTCATCGTGCCGTTTATCG‑‑AAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATcg                                                                              >  2:1347375/1‑134 (MQ=255)
                                                               gAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCAc                                                                         >  2:2057697/1‑140 (MQ=255)
                                                               gAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCAc                                                                         <  2:897800/140‑1 (MQ=255)
                                                               gAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCAc                                                                         >  1:747071/1‑140 (MQ=255)
                                                               gAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCAc                                                                         >  1:1721043/1‑140 (MQ=255)
                                                               gAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCAc                                                                         <  2:1887040/140‑1 (MQ=255)
                                                               gAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCAc                                                                         <  1:1023104/140‑1 (MQ=255)
                                                                aGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCAcc                                                                        >  2:1760674/1‑140 (MQ=255)
                                                                aGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCAcc                                                                        >  2:883872/1‑140 (MQ=255)
                                                                 gTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCa                                                                       >  1:1372456/1‑140 (MQ=255)
                                                                  tGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCgcgc                                                                           <  2:45620/135‑1 (MQ=255)
                                                                  tGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCAt                                                                      >  2:909598/1‑140 (MQ=255)
                                                                  tGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCAt                                                                      <  1:102040/140‑1 (MQ=255)
                                                                  tGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCAt                                                                      >  1:2045659/1‑140 (MQ=255)
                                                                   gCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATc                                                                     >  2:2042101/1‑140 (MQ=255)
                                                                   gCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATc                                                                     >  1:775863/1‑140 (MQ=255)
                                                                    cGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCTCACCATCt                                                                    >  2:1543508/1‑140 (MQ=255)
                                                                       aTTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCtgtg                                                                 <  2:117039/140‑1 (MQ=255)
                                                                         ttGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGa                                                               <  2:2094541/140‑1 (MQ=255)
                                                                            cTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTg                                                            >  1:910201/1‑140 (MQ=255)
                                                                            cTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTg                                                            <  1:978354/140‑1 (MQ=255)
                                                                            cTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTg                                                            >  1:1152189/1‑140 (MQ=255)
                                                                                 cGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGTTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGca                                                       >  1:1663749/1‑140 (MQ=255)
                                                                                 cGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGca                                                       <  1:253829/140‑1 (MQ=255)
                                                                                 cGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGca                                                       <  1:657481/140‑1 (MQ=255)
                                                                                    gCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAg                                                    <  1:1575779/140‑1 (MQ=255)
                                                                                    gCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAg                                                    <  2:1372456/140‑1 (MQ=255)
                                                                                    gCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAg                                                    <  1:883872/140‑1 (MQ=255)
                                                                                           aTCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATcaca                                             >  2:408466/1‑140 (MQ=255)
                                                                                           aTCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATcaca                                             >  2:1251788/1‑140 (MQ=255)
                                                                                              gATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCACATgg                                          <  2:775863/140‑1 (MQ=255)
                                                                                                 aaGTAACCGCTTCCCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCACATGGCTg                                       <  1:1543508/140‑1 (MQ=255)
                                                                                                     aaCCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCACATGGCTGGttt                                   <  1:909598/140‑1 (MQ=255)
                                                                                                      aCCGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCACATGGCTGGTTTc                                  >  1:399448/1‑140 (MQ=255)
                                                                                                       ccGCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCACATGGCTGGTTTCt                                 >  1:1218551/1‑140 (MQ=255)
                                                                                                        agCTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCACATGGCTGGTTTCtt                                <  2:976512/139‑1 (MQ=255)
                                                                                                          cTTACCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCACATGGCTGGTTTCTTTa                              >  1:837235/1‑140 (MQ=255)
                                                                                                             aCCAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCACATGGCTGGTTTCTTTATTc                           >  1:854033/1‑140 (MQ=255)
                                                                                                              ccAGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCACATGGCTGGTTTCTTTATTCa                          >  1:704419/1‑140 (MQ=255)
                                                                                                                aGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCACACCATCTGTGGATTGCCGCACAGCATCACATGGCTGGTTTCtt                                <  1:1870205/132‑1 (MQ=255)
                                                                                                                aGTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCACACCATCTGTGGATTGCCGCACAGCATCACATGGCTGGTTTCtt                                >  2:1870205/1‑132 (MQ=255)
                                                                                                                 gTAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCACATGGCTGGTTTCTTTAtt                            <  2:621758/135‑1 (MQ=255)
                                                                                                                  tAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCACATGGCTGGTTTCTTTATTCATCgg                      >  2:1469193/1‑140 (MQ=255)
                                                                                                                  tAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCACATGGCTGGTTTCTTTATTCATCgg                      <  2:704419/140‑1 (MQ=255)
                                                                                                                  tAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCACATGGCTGGTTTCTTTATTCATCgg                      <  1:2092599/140‑1 (MQ=255)
                                                                                                                  tAATGCTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCACATGGCTGGTTTCTTTATTCATCgg                      >  1:1101794/1‑140 (MQ=255)
                                                                                                                       cTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCACATGGCTGGTTTCTTTATTCATCGGCAGGc                 >  1:1002217/1‑140 (MQ=255)
                                                                                                                       cTCCGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCACATGGCTGGTTTCTTTATTCATCGGCAGGc                 >  2:1993056/1‑140 (MQ=255)
                                                                                                                         ccGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCACATGGCTGGTTTCTTTATTCATCGGCAGGCCa               >  2:317443/1‑140 (MQ=255)
                                                                                                                         ccGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCACATGGCTGGTTTCTTTATTCATCGGCAGGCCa               >  2:1680116/1‑140 (MQ=255)
                                                                                                                          cGCTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCACATGGCTGGTTTCTTTATTCATCGGCAGGCCaa              <  1:1251788/140‑1 (MQ=255)
                                                                                                                            cTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCACATGGCTGGTTTCTTTATTCATCGGCAGGCCAATc            >  2:2101333/1‑140 (MQ=255)
                                                                                                                            cTGTCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCACATGGCTGGTTTCTTTATTCATCGGCAGGCCAATc            >  2:159306/1‑140 (MQ=255)
                                                                                                                               tCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCACATGGCTGGTTTCTTTATTCATCGGCAGGCCAATCGTg         <  1:1993056/140‑1 (MQ=255)
                                                                                                                               tCATATGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCACATGGCTGGTTTCTTTATTCATCGGCAGGCCAATCGTg         >  1:1044745/1‑140 (MQ=255)
                                                                                                                                  tatGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCACATGGCTGGTTTCTTTATTCATCGGCAGGCCAATCGTGCtt      <  1:1567918/140‑1 (MQ=255)
                                                                                                                                    tGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCACATGGCTGGTTTCTTTATTCATCGGCAGGCCAATCGTGCTTTc    <  1:317443/140‑1 (MQ=255)
                                                                                                                                    tGGCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCACATGGCTGGTTTCTTTATTCATCGGCAGGCCAATCGTGCTTTc    <  1:663183/140‑1 (MQ=255)
                                                                                                                                      gCCAGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCACATGGCTGGTTTCTTTATTCATCGGCAGGTCAATCCGGCCTTccc  >  2:1138052/1‑139 (MQ=255)
                                                                                                                                         |                                                                                                                                        
TGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTGTCATATGGCCCGGTCGGCGACGTAAATGTTTCGTCATCTGCCGGGTCTCTTTCAGCAACTGTTGTGTATCGCGCACCATCTGTGGATTGCCGCACAGCATCACATGGCTGGTTTCTTTATTCATCGGCAGGCCAATCGTGCTTTCCA  >  NC_000913/4113619‑4113892

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A