Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A15 F48 I1 R1	115	87.5	3003888	99.1%	2976853	139.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,117,187	C→A	Q12H (CAG→CAT)	glpK ←	glycerol kinase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,117,187	0	C	A	100.0%	328.8 / NA	91	Q12H (CAG→CAT)	glpK	glycerol kinase
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (37/54); total (37/54)

TGGGTGGCCCAGATTTCCATTGGGTCGTGTTCTACCCAACCTGGTTTTGGGTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCCTGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCTTTTTGTTCTGAAGGAGTTGTGGTTTCCTTTTCTTCCACAACACAGATATCGCAAGGCAAATGG  >  NC_000913/4117053‑4117320

tGGGTGGCCCAGATTTCCATTGGGTCGTGTTCTACCCAACCTGGTTTTGGGTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTc                                                                                                                                  >  2:9823/1‑140 (MQ=255)

tGGGTGGCCCAGATTTCCATTGGGTCGTGTTCTACCCAACCTGGTTTTGGGTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTc                                                                                                                                  <  2:149019/140‑1 (MQ=255)

tGGGTGGCCCAGATTTCCATTGGGTCGTGTTCTACCCAACCTGGTTTTGGGTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTc                                                                                                                                  <  2:1078560/140‑1 (MQ=255)

  ggTGGCCCAGATTTCCATTGGGTCGTGTTCTACCCAACCTGGTTTTGGGTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGa                                                                                                                                >  2:411202/1‑140 (MQ=255)

  ggTGGCCCAGATTTCCATTGGGTCGTGTTCTACCCAACCTGGTTTTGGGTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGa                                                                                                                                >  2:1093500/1‑140 (MQ=255)

     ggCCCAGATTTCCATTGGGTCGTGTTCTACCCAACCTGGTTTTGGGTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAgcg                                                                                                                             <  1:1388528/140‑1 (MQ=255)

       cccAGATTTCCATTGGGTCGTGTTCTACCCAACCTGGTTTTGGGTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCa                                                                                                                           >  1:1093606/1‑140 (MQ=255)

       cccAGATTTCCATTGGGTCGTGTTCTACCCAACCTGGTTTTGGGTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCa                                                                                                                           >  1:959934/1‑140 (MQ=255)

             tttCCATTGGGTCGTGTTCTACCCAACCTGGTTTTGGGTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGata                                                                                                                     <  1:1274699/140‑1 (MQ=255)

             tttCCATTGGGTCGTGTTCTACCCAACCTGGTTTTGGGTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGata                                                                                                                     <  1:710755/140‑1 (MQ=255)

                 cATTGGGTCGTGTTCTACCCAACCTGGTTTTGGGTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAg                                                                                                                               <  2:809210/126‑1 (MQ=255)

                 cATTGGGTCGTGTTCTACCCAACCTGGTTTTGGGTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAg                                                                                                                               >  1:809210/1‑126 (MQ=255)

                 cATTGGGTCGTGTTCTACCCAACCTGGTTTTGGGTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATAtt                                                                                                                 >  1:963480/1‑140 (MQ=255)

                    tGGGTCGTGTTCTACCCAACCTGGTTTTGGGTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATAttttt                                                                                                              >  1:54097/1‑140 (MQ=255)

                      ggTCGTGTTCTACCCAACCTGGTTTTGGGTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATTTTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATAttttttt                                                                                                            >  1:180742/1‑140 (MQ=255)

                      ggTCGTGTTCTACCCAACCTGGTTTTGGGTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATAttttttt                                                                                                            <  2:1305663/140‑1 (MQ=255)

                      ggTCGTGTTCTACCCAACCTGGTTTTGGGTAGAGTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATAttttttt                                                                                                            >  2:1002419/1‑140 (MQ=255)

                       gTCGTGTTCTACCCAACCTGGTTTTGGGTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATAtttttttt                                                                                                           <  2:3976/140‑1 (MQ=255)

                       gTCGTGTTCTACCCAACCTGGTTTTGGGTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATAtttttttt                                                                                                           <  1:1424450/140‑1 (MQ=255)

                       gTCGTGTTCTACCCAACCTGGTTTTGGGTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATAtttttttt                                                                                                           <  1:26813/140‑1 (MQ=255)

                        tCGTGTTCTACCCAACCTGGTTTTGGGTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATTCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTc                                                                                                          >  1:617286/1‑140 (MQ=255)

                          gtgtTCTACCCAACCTGGTTTTGGGTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAg                                                                                                        <  1:411202/140‑1 (MQ=255)

                          gtgtTCTACCCAACCTGGTTTTGGGTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAg                                                                                                        <  2:803478/140‑1 (MQ=255)

                          gtgtTCTACCCAACCTGGTTTTGGGTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAg                                                                                                        <  1:1093500/140‑1 (MQ=255)

                                    cAACCTGGTTTTGGGTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTaa                                                                                              <  2:595249/140‑1 (MQ=255)

                                       ccTGGTTTTGGGTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAAttt                                                                                           >  2:1445716/1‑139 (MQ=255)

                                       ccTGGTTTTGGGTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTg                                                                                           >  2:1493938/1‑140 (MQ=255)

                                        cTGGTTTTGGGTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGt                                                                                          <  1:929085/140‑1 (MQ=255)

                                          ggTTTTGGGTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTcc                                                                                        >  1:60240/1‑140 (MQ=255)

                                          ggTTTTGGGTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTcc                                                                                        >  1:466758/1‑140 (MQ=255)

                                           gTTTTGGGTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTccc                                                                                       <  1:467366/140‑1 (MQ=255)

                                            ttttGGGTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTccct                                                                                      >  2:1226748/1‑139 (MQ=255)

                                            ttttGGGTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCg                                                                                      <  1:588599/140‑1 (MQ=255)

                                            ttttGGGTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCg                                                                                      <  1:1445716/140‑1 (MQ=255)

                                            ttttGGGTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCg                                                                                      >  2:812336/1‑140 (MQ=255)

                                             tttGGGTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGt                                                                                     <  1:9823/140‑1 (MQ=255)

                                             tttGGGTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGt                                                                                     <  1:209264/140‑1 (MQ=255)

                                             tttGGGTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGt                                                                                     <  1:1462991/140‑1 (MQ=255)

                                             tttGGGTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGt                                                                                     <  1:137709/140‑1 (MQ=255)

                                             tttGGGTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGt                                                                                     <  2:715992/140‑1 (MQ=255)

                                               tGGGTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTccc                                                                                       >  1:150453/1‑136 (MQ=255)

                                               tGGGTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTccc                                                                                       <  2:150453/136‑1 (MQ=255)

                                               tGGGTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAg                                                                                   <  2:966167/140‑1 (MQ=255)

                                               tGGGTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAg                                                                                   <  2:963480/140‑1 (MQ=255)

                                                gggTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGt                                                                                  <  2:1122883/140‑1 (MQ=255)

                                                gggTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGt                                                                                  <  1:638795/140‑1 (MQ=255)

                                                 ggTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGt                                                                                     >  1:1178062/1‑136 (MQ=255)

                                                 ggTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGt                                                                                     <  2:1178062/136‑1 (MQ=255)

                                                     gATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCatat                                                                             >  1:627829/1‑140 (MQ=255)

                                                           cTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGc                                                                       >  1:904434/1‑140 (MQ=255)

                                                              aaaTTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGaa                                                                    <  2:959934/140‑1 (MQ=255)

                                                                   cgcgCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCttt                                                               <  2:903339/140‑1 (MQ=255)

                                                                      gcTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCTTTTTg                                                            <  2:707090/140‑1 (MQ=255)

                                                                      gcTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCTTTTTg                                                            >  1:662768/1‑140 (MQ=255)

                                                                       cTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCTTTTTGt                                                           <  2:755094/140‑1 (MQ=255)

                                                                         gCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCTTTTTGTTc                                                         <  2:466758/140‑1 (MQ=255)

                                                                                gCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATA‑TTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCTTTTTGTTCTGAAGGAg                                                 <  1:290621/140‑1 (MQ=255)

                                                                                   aaTGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCTTTTTGTTCTGAAGGAGtt                                               <  1:1002419/140‑1 (MQ=255)

                                                                                    aTGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCTTTTTGTTCTGAAGGAGTtg                                              >  1:844753/1‑140 (MQ=255)

                                                                                    aTGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCTTTTTGTTCTGAAGGAGTtg                                              >  1:1476121/1‑140 (MQ=255)

                                                                                      gATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCTTTTTGTTCTGAAGGAGTtgtg                                            <  2:1210967/140‑1 (MQ=255)

                                                                                          ttGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCTTTTTGTTCTGAAGGAGTTGTGGttt                                        >  1:980618/1‑140 (MQ=255)

                                                                                          ttGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCTTTTTGTTCTGAAGGAGTTGTGGttt                                        >  1:680204/1‑140 (MQ=255)

                                                                                          ttGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCTTTTTGTTCTGAAGGAGTTGTGGttt                                        <  1:812336/140‑1 (MQ=255)

                                                                                            ggCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCTTTTTGTTCTGAAGGAGTTGTGGTTTcc                                      <  1:916581/140‑1 (MQ=255)

                                                                                            ggCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCTTTTTGTTCTGAAGGAGTTGTGGTTTcc                                      <  2:904434/140‑1 (MQ=255)

                                                                                              cATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCTTTTTGTTCTGAAGGAGTTGTGGTTTCCtt                                    >  2:98203/1‑140 (MQ=255)

                                                                                              cATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCTTTTTGTTCTGAAGGAGTTGTGGTTTCCtt                                    <  2:17116/140‑1 (MQ=255)

                                                                                                 cGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCTTTTTGTTCTGAAGGAGTTGTGGTTTCCttttt                                 >  2:786130/1‑139 (MQ=255)

                                                                                                 cGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCTTTTTGTTCTGAAGGAGTTGTGGTTTCCTTttc                                 <  2:1476121/140‑1 (MQ=255)

                                                                                                   tGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCTTTTTGTTCTGAAGGAGTTGTGGTTTCCTTttctt                               >  1:506835/1‑140 (MQ=255)

                                                                                                    gATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCTTTTTGTTCTGAAGGAGTTGTGGTTTCCTTttcttc                              <  2:60240/140‑1 (MQ=255)

                                                                                                    gATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCTTTTTGTTCTGAAGGAGTTGTGGTTTCCTTttcttc                              >  2:1317789/1‑140 (MQ=255)

                                                                                                    gATCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCTTTTTGTTCTGAAGGAGTTGTGGTTTCCTTttcttc                              <  1:1493938/140‑1 (MQ=255)

                                                                                                     aTCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCTTTTTGTTCTGAAGGAGTTGTGGTTTCCTTTTCTTcc                             <  1:346542/140‑1 (MQ=255)

                                                                                                      tCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCTTTTTGTTCTGAAGGAGTTGTGGTTTCCTTTTCTTCca                            <  2:54097/140‑1 (MQ=255)

                                                                                                      tCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCTTTTTGTTCTGAAGGAGTTGTGGTTTCCTTTTCTTCca                            <  2:980618/140‑1 (MQ=255)

                                                                                                      tCCATTACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCTTTTTGTTCTGAAGGAGTTGTGGTTTCCTTTTCTTCca                            <  2:627829/140‑1 (MQ=255)

                                                                                                          ttACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCTTTTTGTTCTGAAGGAGTTGTGGTTTCCTTTTCTTCCacaac                        <  2:617286/140‑1 (MQ=255)

                                                                                                          ttACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCTTTTTGTTCTGAAGGAGTTGTGGTTTCCTTTTCTTCCacaac                        >  2:603064/1‑140 (MQ=255)

                                                                                                          ttACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCTTTTTGTTCTGAAGGAGTTGTGGTTTCCTTTTCTTCCacaac                        <  2:302673/140‑1 (MQ=255)

                                                                                                           tACGACCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCTTTTTGTTCTGAAGGAGTTGTGGTTTCCTTTTCTTCCacaaca                       <  2:180742/140‑1 (MQ=255)

                                                                                                               aCCGCGCGGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCTTTTTGTTCTGAAGGAGTTGTGGTTTCCTTTTCTTCCACAACACAGa                   <  2:386570/140‑1 (MQ=255)

                                                                                                                  gcgcgGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCTTTTTGTTCTGAAGGAGTTGTGGTTTCCTTTTCTTCCACAACACAGatat                >  1:874414/1‑140 (MQ=255)

                                                                                                                  gcgcgGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCTTTTTGTTCTGAAGGAGTTGTGGTTTCCTTTTCTTCCACAACACAGatat                >  2:1312489/1‑140 (MQ=255)

                                                                                                                   cgcgGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCTTTTTGTTCTGAAGGAGTTGTGGTTTCCTTTTCTTCCACAACACAGATATc               >  2:1154340/1‑140 (MQ=255)

                                                                                                                    gcgGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCTTTTTGTTCTGAAGGAGTTGTGGTTTCCTTTTCTTCCACAACACAGATATCg              >  1:268808/1‑140 (MQ=255)

                                                                                                                     cgGGAGCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCTTTTTGTTCTGAAGGAGTTGTGGTTTCCTTTTCTTCCACAACACAGATATCGc             >  2:340897/1‑140 (MQ=255)

                                                                                                                          gCTGGTGGTGCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCTTTTTGTTCTGAAGGAGTTGTGGTTTCCTTTTCTTCCACAACACAGATATCGCAAGGc        <  1:603064/140‑1 (MQ=255)

                                                                                                                              gtggtgCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCTTTTTGTTCTGAAGGAGTTGTGGTTTCCTTTTCTTCCACAACACAGATATCGCAAGGCAAAt    >  2:1071084/1‑140 (MQ=255)

                                                                                                                                ggtgCCATGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCTTTTTGTTCTGAAGGAGTTGTGGTTTCCTTTTCTTCCACAACACAGATATCGCAAGGCAAATgg  <  1:1071084/140‑1 (MQ=255)

TGGGTGGCCCAGATTTCCATTGGGTCGTGTTCTACCCAACCTGGTTTTGGGTAGATTTGCTCAAATTCGCGCTGCGACACGCTAATGATATTGGCATCGTGATCCATTACGACCGCGCGGGAGCTGGTGGTGCCCTGGTCGAGCGCAACGATATATTTTTTTTCAGTCATGTTTAATTGTCCCGTAGTCATATTACAGCGAAGCTTTTTGTTCTGAAGGAGTTGTGGTTTCCTTTTCTTCCACAACACAGATATCGCAAGGCAAATGG  >  NC_000913/4117053‑4117320

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A