Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A15 F48 I1 R1 115 87.5 3003888 99.1% 2976853 139.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,426,475 G→C R123P (CGT→CCT)  rplI → 50S ribosomal subunit protein L9

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,426,4750GC100.0% 315.6 / NA 80R123P (CGT→CCT) rplI50S ribosomal subunit protein L9
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base C (41/39);  total (41/39)

GTTACCATCGCGTCTAAAGCTGGCGACGAAGGTAAACTGTTCGGTTCCATCGGTACTCGCGACATCGCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCGTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCGAAGTATTCGCGAAAGTGATCGTAAACGTAGTAGCTGAATAATTCGTTATTCAACGAGACGTAAAAACGCCGACCATTGGTCGGCGTTTTGCTTTC  >  NC_000913/4426339‑4426611
                                                                                                                                        |                                                                                                                                        
gTTACCATCGCGTCTAAAGCTGGCGACGAAGGTAAACTGTTCGGTTCCATCGGTACTCGCGACATCGCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTAc                                                                                                                                       >  2:205871/1‑140 (MQ=255)
  tACCATCGCGTCTAAAGCTGGCGACGAAGGTAAACTGTTCGGTTCCATCGGTACTCGCGACATCGCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCa                                                                                                                                     >  2:1330126/1‑140 (MQ=255)
    ccATCGCGTCTAAAGCTGGCGACGAAGGTAAACTGTTCGGTTCCATCGGTACTCGCGACATCGCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACt                                                                                                                                   >  1:762991/1‑140 (MQ=255)
    ccATCGCGTCTAAAGCTGGCGACGAAGGTAAACTGTTCGGTTCCATCGGTACTCGCGACATCGCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACt                                                                                                                                   >  1:584943/1‑140 (MQ=255)
    ccATCGCGTCTAAAGCTGGCGACGAAGGTAAACTGTTCGGTTCCATCGGTACTCGCGACATCGCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACt                                                                                                                                   >  1:39561/1‑140 (MQ=255)
    ccATCGCGTCTAAAGCTGGCGACGAAGGTAAACTGTTCGGTTCCATCGGTACTCGCGACATCGCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACt                                                                                                                                   >  1:28259/1‑140 (MQ=255)
      aTCGCGTCTAAAGCTGGCGACGAAGGTAAACTGTTCGGTTCCATCGGTACTCGCGACATCGCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTgg                                                                                                                                 <  2:28259/140‑1 (MQ=255)
      aTCGCGTCTAAAGCTGGCGACGAAGGTAAACTGTTCGGTTCCATCGGTACTCGCGACATCGCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTgg                                                                                                                                 <  2:39561/140‑1 (MQ=255)
        cgcgTCTAAAGCTGGCGACGAAGGTAAACTGTTCGGTTCCATCGGTACTCGCGACATCGCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCg                                                                                                                               >  1:875684/1‑140 (MQ=255)
        cgcgTCTAAAGCTGGCGACGAAGGTAAACTGTTCGGTTCCATCGGTACTCGCGACATCGCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCg                                                                                                                               >  1:434330/1‑140 (MQ=255)
         gcgTCTAAAGCTGGCGACGAAGGTAAACTGTTCGGTTCCATCTGTACTCGCGACATCGCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGa                                                                                                                              >  2:748551/1‑140 (MQ=255)
         gcgTCTAAAGCTGGCGACGAAGGTAAACTGTTCGGTTCCATCGGTACTCGCGACATCGCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGa                                                                                                                              >  2:1240074/1‑140 (MQ=255)
         gcgTCTAAAGCTGGCGACGAAGGTAAACTGTTCGGTTCCATCGGTACTCGCGACATCGCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGa                                                                                                                              >  2:147418/1‑140 (MQ=255)
         gcgTCTAAAGCTGGCGACGAAGGTAAACTGTTCGGTTCCATCGGTACTCGCGACATCGCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGa                                                                                                                              >  1:1260627/1‑140 (MQ=255)
           gTCTAAAGCTGGCGACGAAGGTAAACTGTTCGGTTCCATCGGTACTCGCGACATCGCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAac                                                                                                                            >  2:581566/1‑140 (MQ=255)
            tCTAAAGCTGGCGACGAAGGTAAACTGTTCGGTTCCATCGGTACTCGCGACATCGCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAaca                                                                                                                           >  2:423491/1‑140 (MQ=255)
                   cTGGCGACGAAGGTAAACTGTTCGGTTCCATCGGTACTCGCGACATCGCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTg                                                                                                                    >  1:819287/1‑140 (MQ=255)
                    tGGCGACGAAGGTAAACTGTTCGGTTCCATCGGTACTCGCGACATCGCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGa                                                                                                                   <  2:1097124/140‑1 (MQ=255)
                     ggCGACGAAGGTAAACTGTTCGGTTCCATCGGTACTCGCGACATCGCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAg                                                                                                                  >  2:1125866/1‑140 (MQ=255)
                     ggCGACGAAGGTAAACTGTTCGGTTCCATCGGTACTCGCGACATCGCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAg                                                                                                                  >  2:1337235/1‑140 (MQ=255)
                     ggCGACGAAGGTAAACTGTTCGGTTCCATCGGTACTCGCGACATCGCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAg                                                                                                                  <  2:434330/140‑1 (MQ=255)
                      gCGACGAAGGTAAACTGTTCGGTTCCATCGGTACTCGCGACATCGCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGc                                                                                                                 >  1:98715/1‑140 (MQ=255)
                      gCGACGAAGGTAAACTGTTCGGTTCCATCGGTACTCGCGACATCGCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGc                                                                                                                 >  2:729962/1‑140 (MQ=255)
                          agaAGGTAAACTGTTCGGTTCCATCGGTACTCGCGACATCGCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTcc                                                                                                             <  2:380265/139‑1 (MQ=255)
                               gTAAACTGTTCGGTTCCATCGGTACTCGCGACATCGCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGtt                                                                                                        <  1:423491/140‑1 (MQ=255)
                                 aaaCTGTTCGGTTCCATCGGTACTCGCGACATCGCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTca                                                                                                      <  2:76448/140‑1 (MQ=255)
                                    cTGTTCGGTTCCATCGGTACTCGCGACATCGCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAg                                                                                                   >  2:1009314/1‑140 (MQ=255)
                                      gTTCGGTTCCATCGGTACTCGCTACATCGCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCg                                                                                                 <  2:1016411/140‑1 (MQ=255)
                                      gTTCGGTTCCATCGGTACTCGCGACATCGCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCg                                                                                                 <  1:205871/140‑1 (MQ=255)
                                       ttCGGTTCCATCGGTACTCGCGACATCGCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCGa                                                                                                >  1:670723/1‑140 (MQ=255)
                                       ttCGGTTCCATCGGTACTCGCGACATCGCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCGa                                                                                                >  1:520246/1‑140 (MQ=255)
                                         cGGTTCCATCGGTACTCGCGACATCGCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCGAAg                                                                                              >  2:1460941/1‑140 (MQ=255)
                                              ccATCGGTACTCGCGACATCGCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCGAAGTATTc                                                                                         >  2:57957/1‑140 (MQ=255)
                                               cATCGGTACTCGCGACATCGCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCGAAGTATTcg                                                                                        <  2:905758/140‑1 (MQ=255)
                                               cATCGGTACTCGCGACATCGCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCGAAGTATTcg                                                                                        <  2:670723/140‑1 (MQ=255)
                                                    gTACTCGCGACATCGCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCGAAGTATTCGCGaaa                                                                                   <  2:762991/140‑1 (MQ=255)
                                                      aCTCGCGACATCGCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCGAAGTATTCGCGAAAGt                                                                                 >  1:949323/1‑140 (MQ=255)
                                                      aCTCGCGACATCGCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCGAAGTATTCGCGAAAGt                                                                                 >  1:466784/1‑140 (MQ=255)
                                                      aCTCGCGACATCGCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCGAAGTATTCGCGAAAGt                                                                                 <  1:1117347/140‑1 (MQ=255)
                                                         cgcgACATCGCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCGAAGTATTCGCGAAAGTGAt                                                                              <  1:1009314/140‑1 (MQ=255)
                                                         cgcgACATCGCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCGAAGTATTCGCGAAAGTGAt                                                                              <  1:1125866/140‑1 (MQ=255)
                                                          gcgACATCGCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCGAAGTATTCGCGAAAGTGATc                                                                             <  1:1075364/140‑1 (MQ=255)
                                                             aCATCGCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCGAAGTATTCGCGAAAGTGATCGTa                                                                          <  2:1179993/140‑1 (MQ=255)
                                                              cATCGCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCGAAGTATTCGCGAAAGTGATCGTaa                                                                         <  1:57957/140‑1 (MQ=255)
                                                               aTCGCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCGAAGTATTCGCGAAAGTGATCGTaaa                                                                        >  1:586470/1‑140 (MQ=255)
                                                                 cGCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCGAAGTATTCGCGAAAGTGATCGTAAACg                                                                      >  1:58565/1‑140 (MQ=255)
                                                                  gCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCGAAGTATTCGCGAAAGTGATCGTAAACgt                                                                     <  2:520246/140‑1 (MQ=255)
                                                                  gCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCGAAGTATTCGCGAAAGTGATCGTAAACgt                                                                     <  2:916723/140‑1 (MQ=255)
                                                                  gCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCGAAGTATTCGCGAAAGTGATCGTAAACgt                                                                     <  1:1240074/140‑1 (MQ=255)
                                                                  gCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCGAAGTATTCGCGAAAGTGATCGTAAACgt                                                                     <  1:748551/140‑1 (MQ=255)
                                                                    tGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCGAAGTATTCGCGAAAGTGATCGTAAACgtag                                                                   <  2:1260627/140‑1 (MQ=255)
                                                                       cGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCGAAGTATTCGCGAAAGTGATCGTAAACGtagtag                                                                <  2:301545/140‑1 (MQ=255)
                                                                       cGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCGAAGTATTCGCGAAAGTGATCGTAAACGtagtag                                                                <  1:1337235/140‑1 (MQ=255)
                                                                        gCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCGAAGTATTCGCGAAAGTGATCGTAAACGTAGTAGc                                                               >  1:1353051/1‑140 (MQ=255)
                                                                           gTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCGAAGTATTCGCGAAAGTGATCGTAAACGTAGTAGCTGa                                                            >  1:704705/1‑140 (MQ=255)
                                                                            tAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCGAAGTATTCGCGAAAGTGATCGTAAACGTAGTAGCTGaa                                                           >  2:1048149/1‑140 (MQ=255)
                                                                                 gCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCGAAGTATTCGCGAAAGTGATCGTAAACGTAGTAGCTGAATAAtt                                                      <  1:1460941/140‑1 (MQ=255)
                                                                                 gCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCGAAGTATTCGCGAAAGTGATCGTAAACGTAGTAGCTGAATAAtt                                                      <  2:875684/140‑1 (MQ=255)
                                                                                   aGCTGGTGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCGAAGTATTCGCGAAAGTGATCGTAAACGTAGTAGCTGAATAATTCg                                                    >  1:498579/1‑140 (MQ=255)
                                                                                   aGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCGAAGTATTCGCGAAAGTGATCGTAAACGTAGTAGCTGAATAATTCg                                                    <  2:98715/140‑1 (MQ=255)
                                                                                    gCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTAGCGCTGGCGAACACGAAGTGGGCTTCCAGGTTCACTGCGAAGTATTCGCGAAAGTGATCGTAAACGTAGTAGCTGAATAATTCGt                                                   >  2:1413242/1‑140 (MQ=255)
                                                                                      tGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCGAAGTATTCGCGAAAGTGATCGTAAACGTAGTAGCTGAATAATTCGTTa                                                 >  2:843259/1‑140 (MQ=255)
                                                                                             gAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCGAAGTATTCGCGAAAGTGATCGTAAACGTAGTAGCTGAATAATTCGTTATTCAACg                                          <  2:949323/140‑1 (MQ=255)
                                                                                             gAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCGAAGTATTCGCGAAAGTGATCGTAAACGTAGTAGCTGAATAATTCGTTATTCAACg                                          <  2:584943/140‑1 (MQ=255)
                                                                                              aaGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCGAAGTATTCGCGAAAGTGATCGTAAACGTAGTAGCTGAATAATTCGTTATTCAACga                                         <  2:58565/140‑1 (MQ=255)
                                                                                              aaGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCGAAGTATTCGCGAAAGTGATCGTAAACGTAGTAGCTGAATAATTCGTTATTCAACga                                         <  1:729962/140‑1 (MQ=255)
                                                                                              aaGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTAAGCTTCCAGGTTCACAGCGAAGTATTCGCGAAAGTGATCGTAAACGTAGTAGCTGAATAATTCGTTATTCAACga                                         <  1:147418/140‑1 (MQ=255)
                                                                                                   gCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCGAAGTATTCGCGAAAGTGATCGTAAACGTAGTAGCTGAATAATTCGTTATTCAACGAGACGt                                    >  1:819504/1‑140 (MQ=255)
                                                                                                        gagCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCGAAGTATTCGCGAAAGTGATCGTAAACGTAGTAGCTGAATAATTCGTTATTCAACGAGACGTaaaaa                               >  2:462393/1‑140 (MQ=255)
                                                                                                        gagCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCGAAGTATTCGCGAAAGTGATCGTAAACGTAGTAGCTGAATAATTCGTTATTCAACGAGACGTaaaaa                               >  2:281566/1‑140 (MQ=255)
                                                                                                        gagCGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCGAAGTATTCGCGAAAGTGATCGTAAACGTAGTAGCTGAATAATTCGTTATTCAACGAGACGTaaaaa                               >  1:748242/1‑140 (MQ=255)
                                                                                                           cGAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCGAAGTATTCGCGAAAGTGATCGTAAACGTAGTAGCTGAATAATTCGTTATTCAACGAGACGTAAAAACGc                            >  2:255791/1‑140 (MQ=255)
                                                                                                            gAAGTTCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCGAAGTATTCGCGAAAGTGATCGTAAACGTAGTAGCTGAATAATTCGTTATTCAACGAGACGTAAAAACGcc                           <  2:748242/140‑1 (MQ=255)
                                                                                                                ttCGTCTGCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCGAAGTATTCGCGAAAGTGATCGTAAACGTAGTAGCTGAATAATTCGTTATTCAACGAGACGTAAAAACGCCGAcc                       <  2:866270/140‑1 (MQ=255)
                                                                                                                       gCCGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCGAAGTATTCGCGAAAGTGATCGTAAACGTAGTAGCTGAATAATTCGTTATTCAACGAGACGTAAAAACGCCGACCATTGGTc                <  1:1330126/140‑1 (MQ=255)
                                                                                                                        ccGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCGAAGTATTCGCGAAAGTGATCGTAAACGTAGTAGCTGAATAATTCGTTATTCAACGAGACGTAAAAACGCCGACCATTGGTCg               >  2:1098823/1‑140 (MQ=255)
                                                                                                                        ccGAACGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCGAAGTATTCGCGAAAGTGATCGTAAACGTAGTAGCTGAATAATTCGTTATTCAACGAGACGTAAAAACGCCGACCATTGGTCg               >  2:565423/1‑140 (MQ=255)
                                                                                                                             cGGCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCGAAGTATTCGCGAAAGTGATCGTAAACGTAGTAGCTGAATAATTCGTTATTCAACGAGACGTAAAAACGCCGACCATTGGTCGGCGtt          <  1:581566/140‑1 (MQ=255)
                                                                                                                             aggCGTTCTGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCGAAGTATTCGCGAAAGTGATCGTAAACGTAGTAGCTGAATAATTCGTTATTCAACGAGACGTAAAAACGCCGACCATTGGTCGGCGtt          <  2:704705/139‑1 (MQ=255)
                                                                                                                                     tGCCTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCGAAGTATTCGCGAAAGTGATCGTAAACGTAGTAGCTGAATAATTCGTTATTCAACGAGACGTAAAAACGCCGACCATTGGTCGGCGTTTTGCTTTc  <  2:466784/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                        
GTTACCATCGCGTCTAAAGCTGGCGACGAAGGTAAACTGTTCGGTTCCATCGGTACTCGCGACATCGCTGACGCTGTAACTGCAGCTGGCGTTGAAGTGGCTAAGAGCGAAGTTCGTCTGCCGAACGGCGTTCTGCGTACCACTGGCGAACACGAAGTGAGCTTCCAGGTTCACAGCGAAGTATTCGCGAAAGTGATCGTAAACGTAGTAGCTGAATAATTCGTTATTCAACGAGACGTAAAAACGCCGACCATTGGTCGGCGTTTTGCTTTC  >  NC_000913/4426339‑4426611

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A