Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A15 F48 I1 R1 115 87.5 3003888 99.1% 2976853 139.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,433,658 T→G K123Q (AAA→CAA)  qorB ← NAD(P)H:quinone oxidoreductase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,433,6580TG98.7% 291.4 / NA 75K123Q (AAA→CAA) qorBNAD(P)H:quinone oxidoreductase
Reads supporting (aligned to +/- strand):  ref base T (0/1);  new base G (40/34);  total (40/35)
Fisher's exact test for biased strand distribution p-value = 4.67e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

ATTTTGCCATCGCCCGCCGCACCGATAAATACGCCGTGTTCCAGTGCTGCCGGGGCGCTGGCGAGGTAGTTTTCGCTGTACCAGCCGTTGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTTCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGCATGTAGCAGGCTGGTATAAGCGATAAATTTCACGCCAGCCGCCTTTGCGGCATTAATAACATTACGATGCTGCGGGGCACGTTGACC  >  NC_000913/4433528‑4433793
                                                                                                                                  |                                                                                                                                       
aTTTTGCCATCGCCCGCCGCACCGATAAATACGCCGTGTTCCAGTGCTGACGGGGCGCTGGCGAGGTAGTTTTCGCTGTACCAGCCGTTGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGtctc                                                                                                                                >  1:617876/1‑140 (MQ=255)
 ttttCCGATCGCCCGCCGCACGGATAAATTCGCTGTGTTCGAGTGGTGCCGTGGCGTTGGCGAGGTAGTTTTCGCTGTACCAGCCGTTGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCg                                                                                                                               <  2:658336/140‑1 (MQ=255)
   ttgcggccgcccgccGCACCGATAAATACGCCGTGTTCCAGTGCTGCCGGGGCGCTGGCGAGGTAGTTTTCGCTGTACCAGCCGTTGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGAt                                                                                                                             <  2:1018464/133‑1 (MQ=255)
   ttGCCAGCCCCCGCCGCACCGATAAATCCGCCGTGTTCCAGTGCTGCGGGGGCGCGGGGGAGGTAGTTTTCGCTGTCCCTGCCGTTGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGAt                                                                                                                             <  2:508093/140‑1 (MQ=255)
         tCGCCCGCCGCACCGATAAATACGCCGTGTTCCAGTGCTGCCGGGGCGCTGGCGAGGTAGTTTTCGCTGTACCAGCCGTTGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTc                                                                                                                       <  1:284630/140‑1 (MQ=255)
          ggcccgccGCCCCGATAAATACGCCGTGTTCCAGTGCTGCCGGGGCGCTGGCGAGGTAGTTTTCGCTGTACCAGCCGTTGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCa                                                                                                                      <  2:58039/139‑1 (MQ=255)
          cgcccgccGCACCGATAAATACGCCGTGTTCCAGTGCTGCCGGGGCGCTGGCGAGGTAGTTTTCGCTGTACCAGCCGTTGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCa                                                                                                                      >  2:499408/1‑140 (MQ=255)
          cgcccgccGCACCGATAAATACGCCGTGTTCCAGTGCTGCCGGGGCGCTGGCGAGGTAGTTTTCGCTGTACCAGCCGTTGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCa                                                                                                                      >  2:427222/1‑140 (MQ=255)
                        aTAAATGCGGCGTGTTCGAGTGCTGCCGGGGCGCTGGCGAGGTAGTTTTCGCGGACCCAGCCGTTGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAg                                                                                                        <  2:633023/140‑1 (MQ=255)
                            aTACGCCGTGTTCCAGTGCTGCCGGGGCGCTGGCGAGGTAGTTTTCGCTGTACCAGCCGTTGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCggg                                                                                                    <  2:607987/140‑1 (MQ=255)
                             tACGCCGTGTTCCAGTGCTGCCGGGGCGCTGGCGAGGTAGTTTTCGCTGTACCAGCCGTTGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCgggg                                                                                                   <  1:499408/140‑1 (MQ=255)
                              aCGCCGTGTTCCAGTGCTGCCGGGGCGCTGGCGAGGTAGTTTTCGCTGTACCAGCCGTTGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGa                                                                                                  <  1:67621/140‑1 (MQ=255)
                              aCGCCGTGTTCCAGTGCTGCCGGGGCGCTGGCGAGGTAGTTTTCGCTGTACCAGCCGTTGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGa                                                                                                  <  1:1377415/140‑1 (MQ=255)
                                gCCGTGTTCCAGTGCTGCCGGGGCGCTGGCGAGGTAGTTTTCGCTGTACCAGCCGTTGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAgg                                                                                                >  2:196444/1‑140 (MQ=255)
                                 ccGTGTTCCAGTGCTGCCGGGGCGCTGGCGAGGTAGTTTTCGCTGTACCAGCCGTTGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGt                                                                                               <  2:874938/140‑1 (MQ=255)
                                 ccGTGTTCCAGTGCTGCCGGGGCGCTGGCGAGGTAGTTTTCGCTGTACCAGCCGTTGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGt                                                                                               <  1:169027/140‑1 (MQ=255)
                                  cGTGTTCCAGTGCTGCCGGGGCGCTGGCGAGGTAGTTTTCGCTGTACCAGCCGTTGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTa                                                                                              >  1:1492942/1‑140 (MQ=255)
                                  cGTGTTCCAGTGCTGCCGGGGCGCTGGCGAGGTAGTTTTCGCTGTACCAGCCGTTGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTa                                                                                              >  2:685533/1‑140 (MQ=255)
                                   gtgtTCCAGTGCTGCCGGGGCGCTGGCGAGGTAGTTTTCGCTGTACCAGCCGTTGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTAt                                                                                             >  2:288593/1‑140 (MQ=255)
                                   gtgtTCCAGTGCTGCCGGGGCGCTGGCGAGGTAGTTTTCGCTGTACCAGCCGTTGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTAt                                                                                             <  1:288593/140‑1 (MQ=255)
                                   gtgtTCCAGTGCTGCCGGGGCGCTGGCGAGGTAGTTTTCGCTGTACCAGCCGTTGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTAt                                                                                             <  1:109024/140‑1 (MQ=255)
                                    tgtTCCAGTGCTGCCGGGGCGCTGGCGAGGTAGTTTTCGCTGTACCAGCCGTTGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATc                                                                                            >  1:105316/1‑140 (MQ=255)
                                    tgtTCCAGTGCTGCCGGGGCGCTGGCGAGGTAGTTTTCGCTGTACCAGCCGTTGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATc                                                                                            >  2:1013568/1‑140 (MQ=255)
                                    tgtTCCAGTGCTGCCGGGGCGCTGGCGAGGTAGTTTTCGCTGTACCAGCCGTTGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGAATc                                                                                            >  1:852793/1‑140 (MQ=255)
                                       accAGTGCTGCCGGGGCGCTGGCGAGGTAGTTTTCGCTGTACCAGCCGTTGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTTCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGc                                                                                         <  2:617876/139‑1 (MQ=255)
                                             gctgcCGGGGCGCTGGAGAGGTAGTTTTCGCTGTACCAGCCGTTGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGCATGTAg                                                                                   <  2:627119/140‑1 (MQ=255)
                                              ctgcCGGGGCGCTGGCGAGGTAGTTTTCGCTGTACCAGCCGTTGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGCATGTAGc                                                                                  >  2:165342/1‑140 (MQ=255)
                                                gcCGGGGCGCTGGCGAGGTAGTTTTCGCTGTACCAGCCGTTGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGCATGTAGCAg                                                                                >  1:128116/1‑140 (MQ=255)
                                                gcCGGGGCGCTGGCGAGGTAGTTTTCGCTGTACCAGCCGTTGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGCATGTAGCAg                                                                                <  1:947218/140‑1 (MQ=255)
                                                 gccgggCGCTGGCGAGGTAGTTTTCGCTGTACCAGCCGTTGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGCATGTAGCAgg                                                                               >  2:144667/4‑140 (MQ=255)
                                                 ccGGGGCGCTGGCGAGGTAGTTTTCGCTGTACCAGCCGTTGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGCATGTAGCAgg                                                                               <  1:326712/140‑1 (MQ=255)
                                                 ccGGGGCGCTGGCGAGGTAGTTTTCGCTGTACCAGCCGTTGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGCATGTAGCAgg                                                                               <  1:165342/140‑1 (MQ=255)
                                                     ggCGCTGGCGAGGTAGTTTTCGCTGTACCAGCCGTTGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGCATGTAGCAGGCTgg                                                                           >  2:1486966/1‑140 (MQ=255)
                                                      gcgcTAGCGAGGTAGTTTTCGCTGTACCAGCCGTTGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATAGGCGAAGCCGAGCGGGATCGCATCTGCATGTAGCAGGCTGGt                                                                          >  2:773366/1‑140 (MQ=255)
                                                           ggCGAGGTAGTTTTCGCTGTACCAGCCGTTGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGCATGTAGCAGGCTGGTATAAg                                                                     >  2:43739/1‑140 (MQ=255)
                                                           ggCGAGGTAGTTTTCGCTGTACCAGCCGTTGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGCATGTAGCAGGCTGGTATAAg                                                                     >  2:188689/1‑140 (MQ=255)
                                                           ggCGAGGTAGTTTTCGCTGTACCAGCCGTTGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGCATGTAGCAGGCTGGTATAAg                                                                     >  2:964919/1‑140 (MQ=255)
                                                                    gTTTTCGCTGTACCAGCCGTTGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGCATGTAGCAGGCTGGTATAAGCGATAAAtt                                                            >  2:662349/1‑140 (MQ=255)
                                                                     ttttCGCTGTACCAGCCGTTGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGCATGTAGCAGGCTGGTATAAGCGATAAAttt                                                           <  1:427222/140‑1 (MQ=255)
                                                                       ttCGCTGTACCAGCCGTTGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGCATGTAGCAGGCTGGTATAAGCGATAAATTTCa                                                         <  2:133750/140‑1 (MQ=255)
                                                                          gCTGTACCAGCCGTTGCGCAGCATGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGCATGTAGCAGGCTGGTATAAGCGATAAATTTCACGc                                                      >  2:292045/1‑140 (MQ=255)
                                                                                 cAGCCGTTGCGCAACAGTGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGCATGTAGCAGGCTGGTATAAGCGATAAATTTCACGCCAgccgc                                               >  1:143200/1‑140 (MQ=255)
                                                                                   gCCGTTGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGCATGTAGCAGGCTGGTATAAGCGATAAATTTCACGCCAGCCGCCt                                             >  2:254875/1‑140 (MQ=255)
                                                                                   gCCGTTGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGCATGTAGCAGGCTGGTATAAGCGATAAATTTCACGCCAGCCGCCt                                             >  2:637927/1‑140 (MQ=255)
                                                                                   gCCGTTGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGCATGTAGCAGGCTGGTATAAGCGATAAATTTCACGCCAGCCGCCt                                             >  1:672540/1‑140 (MQ=255)
                                                                                   gCCGTTGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGCATGTAGCAGGCTGGTATAAGCGATAAATTTCACGCCAGCCGCCt                                             >  1:1388650/1‑140 (MQ=255)
                                                                                   gCCGTTGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGCATGTAGCAGGCTGGTATAAGCGATAAATTTCACGCCAGCCGCCt                                             >  1:356479/1‑140 (MQ=255)
                                                                                   gCCGTTGCGCAGCAGGGTGTAAACGATGCCAGAATCAACCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGCATGTAGCAGGCTGGTATAAGCGATAAATTTCACGCCAGCCGCCt                                             >  2:191177/1‑140 (MQ=255)
                                                                                     cGTTGCGCAGCAGGGTGTAAACGATGCCAGAATCAGACAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGCATGTAGCAGGCTGGTATAAGCGATAAATTTCACGCCAGCCGCCttt                                           <  1:144667/140‑1 (MQ=255)
                                                                                      gTTGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGCATGTAGCAGGCTGGTATAAGCGATAAATTTCACGCCAGCCGCCTTTg                                          <  1:773366/140‑1 (MQ=255)
                                                                                        tGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGCATGTAGCAGGCTGGTATAAGCGATAAATTTCACGCCAGCCGCCTTTGCg                                        >  2:1294936/1‑140 (MQ=255)
                                                                                        tGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGCATGTAGCAGGCTGGTATAAGCGATAAATTTCACGCCAGCCGCCTTTGCg                                        <  1:662349/140‑1 (MQ=255)
                                                                                        tGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGCATGTAGCAGGCTGGTATAAGCGATAAATTTCACGCCAGCCGCCTTTGCg                                        <  1:196444/140‑1 (MQ=255)
                                                                                        tGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGCATGTAGCAGGCTGGTATAAGCGATAAATTTCACGCCAGCCGCCTTTGCg                                        <  1:254875/140‑1 (MQ=255)
                                                                                        tGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGCATGTAGCAGGCTGGTATAAGCGATAAATTTCACGCCAGCCGCCTTTGCg                                        >  1:1378687/1‑140 (MQ=255)
                                                                                        tGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGCATGTAGCAGGCTGGTATAAGCGATAAATTTCACGCCAGCCGCCTTTGCg                                        >  1:441677/1‑140 (MQ=255)
                                                                                          cgcAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGCATGTAGCAGGCTGGTATAAGCGATAAATTTCACGCCAGCCGCCTTTGCGGc                                      <  1:188689/140‑1 (MQ=255)
                                                                                          cgcAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGCATGTAGCAGGCTGGTATAAGCGATAAATTTCACGCCAGCCGCCTTTGCGGc                                      <  1:43739/140‑1 (MQ=255)
                                                                                                  tgtgtAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGCATGTAGCAGGCTGGTATAAGCGATAAATTTCACGCCAGCCGCCTTTGCGGCATtaataa                              <  2:143200/139‑1 (MQ=255)
                                                                                                    tgtAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGCATGTAGCAGGCTGGTATAAGCGATAAATTTCACGCCAGCCGCCTTTGCGGCATTAATAACa                            >  1:538987/1‑140 (MQ=255)
                                                                                                     gtAAACGATGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGCATGTAGCAGGCTGGTATAAGCGATAAATTTCACGCCAGCCGCCTTTGCGGCATTAATAACAt                           <  1:637927/140‑1 (MQ=255)
                                                                                                             tGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGCATGTAGCAGGCTGGTATAAGCGATAAATTTCACGCCAGCCGCCTTTGCGGCATtaataa                              >  1:188978/1‑129 (MQ=255)
                                                                                                             tGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGCATGTAGCAGGCTGGTATAAGCGATAAATTTCACGCCAGCCGCCTTTGCGGCATtaataa                              <  2:188978/129‑1 (MQ=255)
                                                                                                             tGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGCATGTAGCAGGCTGGTATAAGCGATAAATTTCACGCCAGCCGCCTTTGCGGCATTAATAACa                            <  1:1335108/131‑1 (MQ=255)
                                                                                                             tGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGCATGTAGCAGGCTGGTATAAGCGATAAATTTCACGCCAGCCGCCTTTGCGGCATTAATAACa                            >  2:1335108/1‑131 (MQ=255)
                                                                                                             tGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGCATGTAGCAGGCTGGTATAAGCGATAAATTTCACGCCAGCCGCCTTTGCGGCATTAATAACATTACGAtgt                   >  2:452885/1‑139 (MQ=255)
                                                                                                             tGCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGCATGTAGCAGGCTGGTATAAGCGATAAATTTCACGCCAGCCGCCTTTGCGGCATTAATAACATTACGAtgc                   >  1:570294/1‑140 (MQ=255)
                                                                                                              gCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGGGGTATCTGCATGTAGCAGGCTGGTATAAGCGATAAATTTCACGCCAGCCGCCTTTGCGGCATTAATAACATTACGAtgct                  >  2:308342/1‑140 (MQ=255)
                                                                                                              gCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGCATGTAGCAGGCTGGTATAAGCGATAAATTTCACGCCAGCCGCCTTTGCGGCATTAATAACATTACGAtgct                  >  1:1072741/1‑140 (MQ=255)
                                                                                                              gCCAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGCATGTAGCAGGCTGGTATAAGCGATAAATTTCACGCCAGCCGCCTTTGCGGCATTAATAACATTACGAtgct                  >  1:774088/1‑140 (MQ=255)
                                                                                                                cAGAATCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGCATGTAGCAGGCTGGTATAAGCGATAAATTTCACGCCAGCCGCCTTTGCGGCATTAATAACATTACGAtgctgc                >  2:780028/1‑140 (MQ=255)
                                                                                                                    aTCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGCATGTAGCAGGCTGGTATAAGCGATAAATTTCACGCCAGCCGCCTTTGCGGCATTAATAACATTACGATGCTGCgggg            <  1:780028/140‑1 (MQ=255)
                                                                                                                    aTCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGCATGTAGCAGGCTGGTATAAGCGATAAATTTCACGCCAGCCGCCTTTGCGGCATTAATAACATTACGATGCTGCgggg            <  1:685533/140‑1 (MQ=255)
                                                                                                                    aTCAGCCAGCATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGCATGTAGCAGGCTGGTATAAGCGATAAATTTCACGCCAGCCGCCTTTGCGGCATTAATAACATTACGATGCTGCgggg            <  1:1294936/140‑1 (MQ=255)
                                                                                                                       agccagcATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGCATGTAGCAGGCTGGTATAAGCGATAAATTTCACGCCAGCCGCCTTTGCGGCATTAATAACATTACGATGCTGCGGGGCAc         >  2:9934/1‑140 (MQ=255)
                                                                                                                             cATTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGC‑GGGAGGTATCTGCATGTAGCAGGCTGGTATAAGCGATAAATATCACGCCAGCCGCCTTTGCGGCATTAATAACATTACGATGCTGCGGGGCACGTTGAcc  >  2:377659/1‑140 (MQ=255)
                                                                                                                              aTTTGCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGCATGTAGCAGGCTGGTATAAGCGATAAATTTCACGCCAGCCGCCTTTGCGGCATTAATAACATTACGATGCTGCGGGGCACGTTGAcc  <  2:570294/140‑1 (MQ=255)
                                                                                                                                  |                                                                                                                                       
ATTTTGCCATCGCCCGCCGCACCGATAAATACGCCGTGTTCCAGTGCTGCCGGGGCGCTGGCGAGGTAGTTTTCGCTGTACCAGCCGTTGCGCAGCAGGGTGTAAACGATGCCAGAATCAGCCAGCATTTTCTCCGTCTCGATGTGCTCATCGGCGAGGCCGAGCGGGGAGGTATCTGCATGTAGCAGGCTGGTATAAGCGATAAATTTCACGCCAGCCGCCTTTGCGGCATTAATAACATTACGATGCTGCGGGGCACGTTGACC  >  NC_000913/4433528‑4433793

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A