Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A15 F48 I1 R1
|
115 |
87.5 |
3003888 |
99.1% |
2976853 |
139.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,450,011 |
C→A |
S17Y (TCT→TAT) |
ytfQ → |
galactofuranose ABC transporter periplasmic binding protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,450,011 | 0 | C | A | 99.0%
| 367.7
/ ‑3.0
| 103 | S17Y (TCT→TAT) | ytfQ | galactofuranose ABC transporter periplasmic binding protein |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base A (71/31); total (72/31) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.87e-01 |
Only 100 of 106 total aligned reads displayed.
TAACGCAATCTGTTACATAACGAATTGTCTATAGTTTTTTCGCGAACATCTTTTAACCAATAATAACTACCCCGACGAGGACAACCCTATGTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTCTATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGAAAAGTGAAGCCGAAAAGCGCGGAATCACGTTGAAAATTGCCGATG > NC_000913/4449874‑4450142
|
tAACGCAATCTGTTACATAACGAATTGTCTATAGTTTTTTCGCGAACATCTTTTAACCAATAATAACTACCCCGACGAGGACAACCCTATGTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGtata < 1:1018114/140‑1 (MQ=255)
tAACGCAATCTGTTACATAACGAATTGTCTATAGTTTTTTCGCGAACATCTTTTAACCAATAATAACTACCCCGACGAGGACAACCCTATGTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGtata > 1:742596/1‑140 (MQ=255)
cGCAATCTGTTACATAACGAATTGTCTATAGTTTTTTCGCGAACATCTTTTAACCAATAATAACTACCCCGACGAGGACAACCCTATGTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATgg > 1:1001326/1‑140 (MQ=255)
cAATCTGTTACATAACGAATTGTCTATAGTTTTTTCGCGAACATCTTTTAACCAATAATAACTACCCCGACGAGGACAACCCTATGTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGct > 2:556957/1‑139 (MQ=255)
aTCTGTTACATAACGAATTGTCTATAGTTTTTTCGGGAAAATCTTTTAACCAATAATAACTCCCCCGACGAGGACAACCCTATGTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGtt < 1:458883/140‑1 (MQ=255)
aTCTGTTACATAACGAATTGTCTATAGTTTTTTCGCGAACATCTTTTAACCAATAATAACTACCCCGACGAGGACAACCCTATGTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGtt < 2:1170308/140‑1 (MQ=255)
tCTGTTACATAACGAATTGTCTATAGTTTTTTCGCGAACATCTTTTAACCAATAATAACTACCCCGACGAGGACAACCCTATGTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTg > 2:913641/1‑140 (MQ=255)
tCTGTTACATAACGAATTGTCTATAGTTTTTTCGCGAACATCTTTTAACCAATAATAACTACCCCGACGAGGACAACCCTATGTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTg > 2:1485938/1‑140 (MQ=255)
cTGTTACATAACGAATTGTCTATAGTTTTTTCGCGAACATCTTTTAACCAATAATAACTACCCCGACGAGGACAACCCTATGTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTgg < 1:1123743/140‑1 (MQ=255)
gTTACATAACGAATTGTCTATAGTTTTTTCGCGAACATCTTTTAACCAATAATAACTACCCCGACGAGGACAACCCTATGTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGcc < 1:1472418/140‑1 (MQ=255)
ttACATAACGAATTGTCTATAGTTTTTTCGCGAACATCTTTTAACCAATAATAACTACCCCGACGAGGACAACCCTATGTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCg < 2:73191/140‑1 (MQ=255)
tACATAACGAATTGTCTATAGTTTTTTCGCGAACATCTTTTAACCAATAATAACTACCCCGACGAGGACAACCCTATGTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGc > 2:358834/1‑140 (MQ=255)
cGAATTGTCTATAGTTTTTTCGCGAACATCTTTTAACCAATAATAACTACCCCGACGAGGACAACCCTATGTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTa > 1:586110/1‑140 (MQ=255)
tGTCTATAGTTTTTTCGCGAACATCTTTTAACCAATAATAACTACCCCGACGAGGACACCCCTATGTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCTTTGGCCGCTCCATTAACCGt < 2:742596/140‑1 (MQ=255)
tGTCTATAGTTTTTTCGCGAACATCTTTTAACCAATAATAACTACCCCGACGAGGACAACCCTATGTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGt > 2:544018/1‑140 (MQ=255)
tCTATAGTTTTTTCGCGAACATCTTTTAACCAATAATAACTACCCCGACGAGGACAACCCTATGTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTg < 2:586110/140‑1 (MQ=255)
tataGTTTTTTCGCGAACATCTTTTAACCAATAATAACTACCCCGACGAGGACAACCCTATGTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGa > 1:637346/1‑140 (MQ=255)
tataGTTTTTTCGCGAACATCTTTTAACCAATAATAACTACCCCGACGAGGACAACCCTATGTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGa > 2:1079896/1‑140 (MQ=255)
ttttCGCGAACATCTTTTAACCAATAATAACTACCCCGACGAGGACAACCCTATGTGGAAACGCTTACTTATAGTCTCTGTAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGc > 2:683586/1‑140 (MQ=255)
tttCGCGAACATCTTTTAACCAATAATAACTACCCCGACGAGGACAACCCTATGTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCa > 1:809737/1‑140 (MQ=255)
tttCGCGAACATCTTTTAACCAATAATAACTACCCCGACGAGGACAACCCTATGTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCa < 2:809737/140‑1 (MQ=255)
tttCGCGAACATCTTTTAACCAATAATAACTACCCCGACGAGGACAACCCTATGTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCa > 1:526242/1‑140 (MQ=255)
tCGCGAACATCTTTTAACCAATAATAACTACCCCGACGAGGACAACCCTATGTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAgg > 1:863014/1‑140 (MQ=255)
tCGCGAACATCTTTTAACCAATAATAACTACCCCGACGAGGACAACCCTATGTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAgg > 1:1050901/1‑140 (MQ=255)
tCGCGAACATCTTTTAACCAATAATAACTACCCCGACGAGGACAACCCTATGTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCATTGGCCGCTCCATTAACCGTTGGATTTTCGCAgg > 2:1475838/1‑140 (MQ=255)
aaCATCTTTTAACCAATAATAACTACCCCGCCGAGGACAACCCTATGTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGtcgga > 1:1224003/1‑140 (MQ=255)
aCATCTTTTAACCAATAATAACTACCCCGACGAGGACAACCCTATGTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGtcggat < 1:1211478/140‑1 (MQ=255)
aCATCTTTTAACCAATAATAACTACCCCGACGAGGACAACCCTATGTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGtcggat < 1:11769/140‑1 (MQ=255)
aCATCTTTTAACCAATAATAACTACCCCGACGAGGACAACCCTATGTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGtcggat < 2:1416071/140‑1 (MQ=255)
aCATCTTTTAACCAATAATAACTACCCCGACGAGGACAACCCTATGTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGtcggat < 1:358834/140‑1 (MQ=255)
cATCTTTTAACCAATAATAACTACCCCGACGAGGACAACCCTATGTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGtcggatc < 1:918367/140‑1 (MQ=255)
tttAACCAATAATAACTACCCCGACGAGGACAACCCTATGTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAAt < 2:859459/140‑1 (MQ=255)
ataataACTACCCCGACGAGGACAACCCTATGTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTgg > 1:845052/1‑140 (MQ=255)
ataataACTACCCCGACGAGGACAACCCTATGTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTgg > 2:1279934/1‑140 (MQ=255)
taataaCTACCCCGACGAGGACAACCCTATGTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGc > 1:249729/1‑140 (MQ=255)
aCCCCGACGAGGACAACCCTATGTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCa < 2:526242/140‑1 (MQ=255)
cccGACGAGGACAACCCTATGTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGa > 2:1376737/1‑140 (MQ=255)
cccGACGAGGACAACCCTATGTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGa > 2:830025/1‑140 (MQ=255)
cccGACGAGGACAACCCTATGTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGa > 2:1363078/1‑140 (MQ=255)
cccGACGAGGACAACCCTATGTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGa > 2:1239363/1‑140 (MQ=255)
cccGACGAGGACAACCCTATGTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGa > 2:625565/1‑140 (MQ=255)
acgaGGACAACCCTATGAGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGCGCCGCAGAAAcc > 1:853464/1‑140 (MQ=255)
aGGACAACCCTATGTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAAt > 2:523196/1‑140 (MQ=255)
aGGACAACCCTATGTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAAt < 2:183170/140‑1 (MQ=255)
gACAACCCTATGTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAAtgt > 2:390177/1‑140 (MQ=255)
gACAACCCTATGTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAAtgt < 1:1376737/140‑1 (MQ=255)
aCCCTATGTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCg < 2:476843/140‑1 (MQ=255)
aCCCTATGTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCg < 1:390177/140‑1 (MQ=255)
cccTATGTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGa > 2:1009178/1‑140 (MQ=255)
ccTATGTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGaa > 1:673415/1‑140 (MQ=255)
aTGTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGAAAAg < 1:932341/140‑1 (MQ=255)
tgtgGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGAAAAGt > 1:877725/1‑140 (MQ=255)
tgtgGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGAAAAGt > 2:808471/1‑140 (MQ=255)
tgtgGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGAAAAGt > 2:1095836/1‑140 (MQ=255)
tgtgGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGAAAAGt > 1:1306766/1‑140 (MQ=255)
tgtgGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGAAAAGt > 2:520107/1‑140 (MQ=255)
tgtgGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGAAAAGt > 2:1242517/1‑140 (MQ=255)
tgtgGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATAAGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGAAAAGt > 1:747224/1‑140 (MQ=255)
gtgGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGAAAAGTg < 1:556957/140‑1 (MQ=255)
aaaCGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTCTATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGAAAAGTGAAGc > 1:33988/1‑140 (MQ=255)
aaaCGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGAAAAGTGAAGc > 1:1493845/1‑140 (MQ=255)
aaaCGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGAAAAGTGAAGc > 1:833746/1‑140 (MQ=255)
gCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGAAAAGTGAAGCCGaa < 1:1079896/140‑1 (MQ=255)
cttacttaTAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGAAAAGTGAAGCCGaaa > 2:53204/1‑140 (MQ=255)
cttacttaTAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGAAAAGTGAAGCCGaaa > 1:1269013/1‑140 (MQ=255)
tacttaTAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCGGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGAAAAGTGAAGCCGAAAAg > 2:1194726/1‑140 (MQ=255)
acttaTAGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCATTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGAAAAGTGAAGCCGAAAAgc < 1:1475838/140‑1 (MQ=255)
taGTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGAAAAGTGAAGCCGAAAAGCGCGGa < 1:1009178/140‑1 (MQ=255)
gTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGAAAAGTGAAGCCGAAAAGCGCGGAAt < 2:637346/140‑1 (MQ=255)
gTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGAAAAGTGAAGCCGAAAAGCGCGGAAt > 1:1303033/1‑140 (MQ=255)
gTCTCTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGCATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGAAAAGTGAAGCCGAAAAGCGCGGAAt < 2:853464/140‑1 (MQ=255)
tctcTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGAAAAGTGAAGCCGAAAAGCGCGGAATc > 1:1057701/1‑140 (MQ=255)
tctcTGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGAAAAGTGAAGCCGAAAAGCGCGGAATc < 2:1269013/140‑1 (MQ=255)
tctGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGAAAAGTGAAGCCGAAAAGCGCGGAATCAc > 1:328836/1‑140 (MQ=255)
tctGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGAAAAGTGAAGCCGAAAAGCGCGGAATCAc > 1:240909/1‑140 (MQ=255)
tctGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGAAAAGTGAAGCCGAAAAGCGCGGAATCAc > 1:1234983/1‑140 (MQ=255)
tctGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGAAAAGTGAAGCCGAAAAGCGCGGAATCAc > 2:519328/1‑140 (MQ=255)
tctGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGAAAAGTGAAGCCGAAAAGCGCGGAATCAc > 1:1366556/1‑140 (MQ=255)
tctGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGAAAAGTGAAGCCGAAAAGCGCGGAATCAc > 1:143620/1‑140 (MQ=255)
ctGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGAAAAGTGAAGCCGAAAAGCGCGGAATCACg > 1:1334242/1‑140 (MQ=255)
tGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGAAAAGTGAAGCCGAAAAGCGCGGAATCACGt > 1:636950/1‑140 (MQ=255)
tGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGAAAAGTGAAGCCGAAAAGCGCGGAATCACGt > 1:544672/1‑140 (MQ=255)
tGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGAAAAGTGAAGCCGAAAAGCGCGGAATCACGt > 1:111345/1‑140 (MQ=255)
tGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGAAAAGTGAAGCCGAAAAGCGCGGAATCACGt > 2:699276/1‑140 (MQ=255)
tGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGAAAAGTGAAGCCGAAAAGCGCGGAATCACGt > 2:694543/1‑140 (MQ=255)
tGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGAAAAGTGAAGCCGAAAAGCGCGGAATCACGt > 2:1445110/1‑140 (MQ=255)
tGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGAAAAGTGAAGCCGAAAAGCGCGGAATCACGt > 1:165849/1‑140 (MQ=255)
tGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGAAAAGTGAAGCCGAAAAGCGCGGAATCACGt > 2:1121119/1‑140 (MQ=255)
tGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGAAAAGTGAAGCCGAAAAGCGCGGAATCACGt > 2:516353/1‑140 (MQ=255)
tGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGAAAAGTGAAGCCGAAAAGCGCGGAATCACGt > 2:40541/1‑140 (MQ=255)
tGCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGAAAAGTGAAGCCGAAAAGCGCGGAATCACGt > 2:1423597/1‑140 (MQ=255)
gCAGTCTCGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGAAAAGTGAAGCCGAAAAGCGCGGAATCACGtt < 1:196962/140‑1 (MQ=255)
tctcGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGAAAAGTGAAGCCGAAAAGCGGGGAATCACGTTGaaa > 1:73331/1‑140 (MQ=255)
tcGGCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGAAAAGTGAAGCCGAAAAGCGCGGAATCACGTTGAAAAt > 2:1324487/1‑140 (MQ=255)
gCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGAAAAGTGAAGCCGAAAAGCGCGGAATCACGTTGAAAATTGc > 2:1154425/1‑140 (MQ=255)
gCAGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGAAAAGTGAAGCCGAAAAGCGCGGAATCACGTTGAAAATTGc > 1:304721/1‑140 (MQ=255)
aGCCATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGAAAAGTGAAGCCGAAAAGCGCGGAATCACGTTGAAAATTGCCg > 1:43171/1‑140 (MQ=255)
gacATGTCGTATATGGCGTTGGCCGCTCGAGTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAGACCAATGTGGCGAAAAGTGAAGCCGAAAAGCGCGGAATCACGTTGAAAATTGCCGa < 2:863014/138‑1 (MQ=255)
ccATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGAAAAGTGAAGCCGAAAAGCGCGGAATCACGTTGAAAATTGCCGAt > 1:287522/1‑140 (MQ=255)
cATGTCGTATATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGAAAAGTGAAGCCGAAAAGCGCGGAATCACGTTGAAAATTGCCGATg < 2:1334242/140‑1 (MQ=255)
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TAACGCAATCTGTTACATAACGAATTGTCTATAGTTTTTTCGCGAACATCTTTTAACCAATAATAACTACCCCGACGAGGACAACCCTATGTGGAAACGCTTACTTATAGTCTCTGCAGTCTCGGCAGCCATGTCGTCTATGGCGTTGGCCGCTCCATTAACCGTTGGATTTTCGCAGGTCGGATCGGAATCAGGCTGGCGTGCCGCAGAAACCAATGTGGCGAAAAGTGAAGCCGAAAAGCGCGGAATCACGTTGAAAATTGCCGATG > NC_000913/4449874‑4450142
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
