Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A15 F48 I1 R1	115	87.5	3003888	99.1%	2976853	139.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,495,662	A→T	I183N (ATC→AAC)	ahr ←	aldehyde reductase, NADPH‑dependent

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,495,662	0	A	T	100.0%	156.0 / NA	45	I183N (ATC→AAC)	ahr	aldehyde reductase, NADPH‑dependent
Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (29/16); total (29/16)

TGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGTGCAGAAGTTTTATAGCGATATGCCCCAGCCCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAAGACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAG  >  NC_000913/4495529‑4495798

tGCTTTCAGTGCCTGCGGATCGCGGCTATTAACCACTTTATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGTGCAGAAGTTTTATAGCGTTATGcc                                                                                                                                    >  2:200418/1‑140 (MQ=255)

    ttCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAAAACAAAAGGCTGTCCCCTCGCATCCAATTGCGTGCAGAATTTTTATAGCGTTATGCCCCAg                                                                                                                                <  2:882648/140‑1 (MQ=255)

            cTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGTGCAGAAGTTTTATAGCGTTATGCCCCAGCCCGCCaa                                                                                                                        >  1:1173204/1‑140 (MQ=255)

              gCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACAAAAGGCTGCCCCCTCGCACCCCATTGCGTGAAGAATTTTTATAGCTTTTTGCCCCAGCCCGCCAATa                                                                                                                      <  2:331916/140‑1 (MQ=255)

                ggATCGCGGCTTTTCACCCTTTTATCGGCACCCATCGCCAGCCCTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCCCGCATCCCATTGCGTGCAGAAGTTTTATAGCGTTATGCCCCAGCCCGCCAATAcc                                                                                                                    <  2:134553/140‑1 (MQ=255)

                   ttgcgGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGTGCAGAAGTTTTATAGCGTTATGCCCCAGCCCGCCAATACCAAt                                                                                                                 >  1:605403/3‑140 (MQ=255)

                   tCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGTGCAGAAGTTTTATAGCGTTATGCCCCAGCCCGCCAATACCAAt                                                                                                                 >  1:819100/1‑140 (MQ=255)

                           aTTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGTGAAGAAGTTTTATAGCGTTATGCCCCAGCCCGCCAATACCAATTACCCCaa                                                                                                         <  1:595921/140‑1 (MQ=255)

                             tccccccTTTATCGGCACCCATCGCCACCACTTCCTGCTCTTCCGCCGGATTAGAACAAAAGGCTACCCCCCCGCATCCCATTGCGTGAAGATTTTTTATAGCTTTATCCCCCACCCCGCCAATACCAATTACCCCAAcg                                                                                                       <  2:234321/134‑1 (MQ=255)

                               acctcTTTATCGGCCCCCACCGCCAGCACTTCCTGCTTTTTCGCCGGATTAGAACTAAAGGCTGCCCCCTCCCATCCCATTGCGTGCAGAAGTTTTATAGCGTTATCCCCCAGCCCGCCAATACCAATTACCCCAAcgcg                                                                                                     <  2:637001/140‑1 (MQ=255)

                                 cacTTTATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGTGCAGAAGTTTTATAGCGTTATGCCCCAGCCCGCCAATACCAATTACCCCAACGCGGc                                                                                                   >  1:1047627/1‑140 (MQ=255)

                                  attttATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGAATTAGAACAAAAGGCTGTCACCTCGCACCCCATTGCGTGCAGAAGTTTTATAGCGTTATGCCCCAGCCCGCCAATACCAATTACCCCAACGCGGCt                                                                                                  <  2:1193999/138‑1 (MQ=255)

                                   cTTTATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGTGCAGAAGTTTTATAGCGTTATGCCCCAGCCCGCCAATACCAATTACCCCAACGCGGCTg                                                                                                 >  1:345666/1‑140 (MQ=255)

                                    tttATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACAAAAGGCTGTCACCTCGCATCCCATTGCGTGCAGAAGTTTTATAGCGTTATGCCCCAGCCCGCCAATACCAATTACCCCAACGCGGCTgg                                                                                                <  1:376341/140‑1 (MQ=255)

                                      tATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGTGCAGAAGTTTTATAGCGTTATGCCCCAGCCCGCCAATACCAATTACCCCAACGCGGCTGGTa                                                                                              >  2:1096187/1‑140 (MQ=255)

                                      tATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGTGCAGAAGTTTTATAGCGTTATGCCCCAGCCCGCCAATACCAATTACCCCAACGCGGCTGGTa                                                                                              >  2:1351624/1‑140 (MQ=255)

                                      tATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGTGCAGAAGTTTTATAGCGTTATGCCCCAGCCCGCCAATACCAATTACCCCAACGCGGCTGGTa                                                                                              >  1:277814/1‑140 (MQ=255)

                                       aTCGGCACCCATCGCCAGCTTTCCCTGCTCTTTCGCCGGATTAGAAAAAAAGGCTGACCCCTCGCCTCCCATTGCGTGCAGAGGTTTTATAGCGTTATGCCCCAGCCCGCCAATACCAATTACCCCAACGCGGCTGGTAg                                                                                             <  2:140395/140‑1 (MQ=255)

                                       aTCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCCCCTCGCATCCCATTGCGTGCAGAAGTTTTATAGCGTTATGCCCCAGCCCGCCAATACCAATTACCCCAACGCGGCTGGTAg                                                                                             <  1:1351624/140‑1 (MQ=255)

                                       aTCGGCACCCACCGCCAGCTCTTCCTGTTCTTCCGCGGGTTAAGAACAAAAGGCTGCCACCTCGCATCCCATTGCGTGCAGAAGTTTTAGAGCGTTAGGCCCAAGCCCGCCAATACCAATTACCCCAACGCGGCTGGTAg                                                                                             <  2:200441/140‑1 (MQ=255)

                                        tCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGTGCAGAAGTTTTATAGCGTTATGCCCCAGCCCGCCAATACCAATTACCCCAACGCGGCTGGTAGc                                                                                            >  2:309826/1‑140 (MQ=255)

                                         cGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCCCCTCGCATCCCATTGCGTGCAGAAGTTTTATAGCGTTATGCCCCAGCCCGCCAATACCAATTACCCCAACGCGGCTGGTAGCa                                                                                           <  2:1139126/140‑1 (MQ=255)

                                           gCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGTGCAGAAGTTTTATAGCGTTATGCCCCAGCCCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGt                                                                                         >  1:830318/1‑140 (MQ=255)

                                            aaCCCATCGCCAGCACTCCCTGCTCTTTCGCCGGATAAGAACTAAAGGCTGTCCCCTCGCACCCCATTGCGGGGAGAGGTTTTCTAGCGTTATGCCCAGGCCCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTg                                                                                        <  2:266928/139‑1 (MQ=255)

                                              cccATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGTGCAGAAGTTTTATAGCGTTATGCCCCAGCCCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGat                                                                                      >  1:449238/1‑140 (MQ=255)

                                              cccATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGTGCAGAAGTTTTATAGCGTTATGCCCCAGCCCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGat                                                                                      >  1:1498587/1‑140 (MQ=255)

                                              cccATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGTGCAGAAGTTTTATAGCGTTATGCCCCAGCCCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGat                                                                                      >  1:1285571/1‑140 (MQ=255)

                                                caccGCCAGCTCTCCCTGCTCTTTCGCCGAATTAGAACAAAGGGCTGCCCCCTCGCATCCAATGGCGTGCAGAAGTTTTATAGCGTTATGCCCCAGCCCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGatat                                                                                    <  2:345666/137‑1 (MQ=255)

                                                cATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGTGCAGAAGTTTTATAGCGTTATGCCCCAGCCCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGatat                                                                                    <  1:1096187/140‑1 (MQ=255)

                                                cATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGTGCAGAAGTTTTATAGCGTTATGCCCCAGCCCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGatat                                                                                    >  2:1126555/1‑140 (MQ=255)

                                                aaTCGCCAGCACTTCCTGCTTTTTCGCCGGATTAGAACTAAAGGCTGTCCCCTCGCACCCCATTGCGTGCAGAATTTTTATAGCGTTATGCCCCAGCCCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGatat                                                                                    <  2:605403/139‑1 (MQ=255)

                                                  tCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCCCCTCGCATCCCATTGCGTGCAGAAGTTTTATGGCGTTATGCCCCAGCCCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATgg                                                                                  <  1:1311238/140‑1 (MQ=255)

                                                         cACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGTGCAGAAGTTTTATAGCGTTATGCCCCAGCCCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCa                                                                           >  1:1367786/1‑140 (MQ=255)

                                                         cACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGTGCAGAAGTTTTATAGCGTTATGCCCCAGCCCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCa                                                                           >  1:793019/1‑140 (MQ=255)

                                                          aCTTCCTGCTCTTTCGCGGGATTAGAACTAAAGGCTGTCACCTCGCCTCCAATGGCGTGAAGAAGTTTTAGAGCGTTATGCCCCAGCCCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCaa                                                                          <  2:32952/140‑1 (MQ=255)

                                                          aCTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGTGCAGAAGTTTTATAGCGTTATGCCCCAGCCCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCaa                                                                          <  2:216256/140‑1 (MQ=255)

                                                            ttCCTTCTCTTTCGCCGAATTAGAAATAAAGACTGTCCCCTCGCACCCCTTTGGGTGCAAAAGTTTTAAAGCGTTAGGCCCACGCCCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACa                                                                        <  2:196012/140‑1 (MQ=255)

                                                            ttCCTGTTCTTTCGCCGGATTAGAACTAAAGGCTGCCCCCTCGCATCCCATTGCGTGCAGAAGTTTAATAGCGTAATCCCCCAGCCCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACa                                                                        <  2:137694/140‑1 (MQ=255)

                                                            ttCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGTGCAGAATTTTTATAGCGTTATGCCCCAGCCCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACa                                                                        <  2:1173204/140‑1 (MQ=255)

                                                            ttCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGTGCAGAAGTTTTATAGCGTTATGCCCCAGCCCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACa                                                                        <  2:277814/140‑1 (MQ=255)

                                                              cttcctctTTCGCCAGATAACAACTAAAGGCTCCCCCCTCGCACCCCATGGCGTGAAAAAGTTTTATAGCTTTATGCCCAAGCCCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGt                                                                      <  2:1498587/136‑1 (MQ=255)

                                                              ccTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGTGCAGCAGTTTTATAGCGTTATGCCCCAGCCCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGt                                                                      >  2:1419469/1‑140 (MQ=255)

                                                                    ttttCGCCGGATGAAAAATAAAGGCTTTCCCCTCGCATCCCATTGCGGGCAGAATTTTTATAGCGTTATGCCCCAGCCCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTa                                                                <  2:819100/139‑1 (MQ=255)

                                                                    tttccgcgGGATAAGAAATAAGGGCTGCCACCTCGCACCCAATTGCGTGCAGAATTTTAATGGCGTGATGCCCGAGCCCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTa                                                                <  2:59223/136‑1 (MQ=255)

                                                                      ttCGCCGGATTAGAACTAAAGGCTGTCCCCTCGCATCCCATTGCGTGCAGAAGTTTTATAGCTTTATGCCCCAGCCCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTaaa                                                              <  1:1283125/140‑1 (MQ=255)

                                                                      ttCGCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGTGCAGAAGTTTTATAGCGTTATGCCCCAGCCCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTaaa                                                              >  2:375638/1‑140 (MQ=255)

                                                                        cGCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGTGCAGAAGTTTTATAGCGTTATGCCCCAGCCCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAAGa                                                            >  2:185718/1‑140 (MQ=255)

                                                                         gCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGTGCAGAAGTTTTATAGCGTTATGCCCCAGCCCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAAGAc                                                           <  1:1310552/140‑1 (MQ=255)

                                                                                 aGAACTAAAGGCTGTCCCCTCCCACCCCCTGGCATGAAGAATTTTTATGGCTTTATCCCCCTGCCCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAAGACCGTGATAc                                                   <  2:316334/140‑1 (MQ=255)

                                                                                   aaCTAAAGGCTGTCACCTCGCATCCCATTGCGTGCAGAAGTTTTATAGCGTTATGCCCCAGCCCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAAGACCGTGATAccg                                                 >  1:683641/1‑140 (MQ=255)

                                                                                        aaGGCTGTCCCCTCGCCCCCAATTCCGGGCAGAATTTTAATAGCTTTACGCCCCGGCCCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAAGACCGTGATACCGCCGca                                            <  1:1142048/140‑1 (MQ=255)

                                                                                             tGTCACCTCGCATCCCATTGCGTGCAGAAGTTTTATAGCGTTATGCCCCAGCCCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGCTTAAAGACCGTGATACCGCCGCacaaca                                       >  1:171965/1‑140 (MQ=255)

                                                                                                cACCTCGCATCCCATTGCGTGCAGAAGTTTTATAGCGTTATGCCCCAGCCCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAAGACCGTGATACCGCCGCACAACAGCg                                    >  2:851024/1‑140 (MQ=255)

                                                                                                      gCATCCCATTGCGTGCAGAAGTTTTATAGCGTTATGCCCCAGCCCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAAGACCGTGATACCGCCGCACAACAGCGGCCcgg                              >  1:1111315/1‑140 (MQ=255)

                                                                                                         tCCCATTGCGTGCAGAAGTTTTATAGCGTTATGCCCCAGCCCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAAGACCGTGATACCGCCGCACAACAGCGGCCcggcgg                           >  2:1456615/1‑140 (MQ=255)

                                                                                                           ccATTGCGTGCAGAAGTTTTATAGCGTTATGCCCCAGCCCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAAGACCGTGATACCGCCGCACAACAGCGGCCCGGCGGAc                         <  1:1126555/140‑1 (MQ=255)

                                                                                                            cATTGCGTGCAGAAGTTTTATAGCGTTATGCCCCAGCCCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAAGACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACt                        <  1:591661/140‑1 (MQ=255)

                                                                                                               tGCGTGCAGAAGTTTTATAGCGTTATGCCCCAGCCCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAAGACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGa                     >  1:804026/1‑140 (MQ=255)

                                                                                                                gCGTGCAGAAGTTTTATAGCGTTATGCCCCAGCCCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAAGACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGat                    >  1:687471/1‑140 (MQ=255)

                                                                                                                     aaGAATTTTTATAGCTTTATGCCCCAGCCCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAAGACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCaa               <  2:1367786/139‑1 (MQ=255)

                                                                                                                      aGAAGTTTTATAGCGTTATGCCCCAGCCCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAAGACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAat              >  2:337959/1‑140 (MQ=255)

                                                                                                                               ataGCGTTATGCCCCAGCCCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAATGATATGGTGCATCAACAGTGGTTTAAAGACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTgg     >  1:1020096/1‑140 (MQ=255)

                                                                                                                                taGCGTTATGCCCCAGCCCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAAGACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGc    >  1:229591/1‑140 (MQ=255)

                                                                                                                                  gCGTTATGCCCCAGCCCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAAGACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAg  <  1:1419469/140‑1 (MQ=255)

                                                                                                                                  gCGTTATGCCCCAGCCCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAAGACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAg  <  1:185718/140‑1 (MQ=255)

                                                                                                                                  gCGATATGCCCCAGCCCGCCAATGCCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAAGACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAg  <  1:200418/140‑1 (MQ=255)

TGCTTTCAGTGCCTGCGGATCGCGGCTATTCACCACTTTATCGGCACCCATCGCCAGCACTTCCTGCTCTTTCGCCGGATTAGAACTAAAGGCTGTCACCTCGCATCCCATTGCGTGCAGAAGTTTTATAGCGATATGCCCCAGCCCGCCAATACCAATTACCCCAACGCGGCTGGTAGCAGTGATATGGTGCATCAACAGTGGTTTAAAGACCGTGATACCGCCGCACAACAGCGGCCCGGCGGACTCGATATCAATATTTTCTGGCAG  >  NC_000913/4495529‑4495798

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A