Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F48 I1 R1 508 125.6 4303852 99.2% 4269421 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,914,360 G→T A214E (GCA→GAA)  rlmD ← 23S rRNA m(5)U1939 methyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,914,3600GT100.0% 479.1 / NA 137A214E (GCA→GAA) rlmD23S rRNA m(5)U1939 methyltransferase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (67/70);  total (67/70)

Only 100 of 142 total aligned reads displayed.

AAAGTTAAGCGCAACCCGTTTGAGTCATACCAGGGCATCTCACCAGAGACGGTTTCGAGTATCTCACTATCGGGGGCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTGCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAGATGGCGCATAGCTTGTAAGCTGCCCAGACATGCCCTGACTTTGGGCAGCAATGCT  >  NC_000913/2914228‑2914491
                                                                                                                                    |                                                                                                                                   
   gTTAAGCGCAACCCGTTTGAGTCATACCAGGGCATCTCACCAGAGACGGTTTCGAGTATCTCACTATCGGGGGCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAg                                                                                                                           <  1:636495/140‑1 (MQ=255)
   gTTAAGCGCAACCCGTTTGAGTCATACCAGGGCATCTCACCAGAGACGGTTTCGAGTATCTCACTATCGGGGGCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAg                                                                                                                           <  2:252570/140‑1 (MQ=255)
     tAAGCGCAACCCGTTTGAGTCATACCAGGGCATCTCACCAGAGACGGTTTCGAGTATCTCACTATCGGGGGCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAgcg                                                                                                                         <  1:66950/140‑1 (MQ=255)
      aaGCGCAACCCGTTTGAGTCATACCAGGGCATCTCACCAGAGACGGTTTCGAGTATCTCACTATCGGGGGCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAgcgg                                                                                                                        >  2:1316895/1‑140 (MQ=255)
        gcgcAACCCGTTTGAGTCATACCAGGGCATCTCACCAGAGACGGTTTCGAGTATCTCACTATCGGGGGCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAgcggtg                                                                                                                      <  1:1781498/140‑1 (MQ=255)
        gcgcAACCCGTTTGAGTCATACCAGGGCATCTCACCAGAGACGGTTTCGAGTATCTCACTATCGGGGGCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAgcggtg                                                                                                                      <  1:1230142/140‑1 (MQ=255)
          gcAACCCGTTTGAGTCATACCAGGGCATCTCACCAGAGACGGTTTCGAGTATCTCACTATCGGGGGCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAgcggtgcg                                                                                                                    >  1:391372/1‑140 (MQ=255)
              cccGTTTGAGTCATACCAGGGCATCTCACCAGAGACGGTTTCGAGTATCTCACTATCGGGGGCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTAt                                                                                                                <  1:1747917/140‑1 (MQ=255)
              cccGTTTGAGTCATACCAGGGCATCTCACCAGAGACGGTTTCGAGTATCTCACTATCGGGGGCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTAt                                                                                                                >  2:271575/1‑140 (MQ=255)
              cccGTTTGAGTCATACCAGGGCATCTCACCAGAGACGGTTTCGAGTATCTCACTATCGGGGGCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCCTCCGAACTTAGCGGTGCGGTAt                                                                                                                >  1:1801188/1‑140 (MQ=255)
                   ttGAGTCATACCAGGGCATCTCACCAGAGACGGTTTCGAGTATCTCACTATCGGGGGCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGgcgc                                                                                                           <  1:2151584/140‑1 (MQ=255)
                      aGTCATACCAGGGCATCTCACCAGAGACGGTTTCGAGTATCTCACTATCGGGGGCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCaaa                                                                                                        >  1:1515472/1‑140 (MQ=255)
                          aTACCAGGGCATCTCACCAGAGACGGTTTCGAGTATCTCACTATCGGGGGCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAatca                                                                                                    >  1:1075668/1‑140 (MQ=255)
                            aCCAGGGCATCTCACCAGAGACGGTTTCGAGTATCTCACTATCGGGGGCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAatcatc                                                                                                  >  1:793437/1‑140 (MQ=255)
                            aCCAGGGCATCTCACCAGAGACGGTTTCGAGTATCTCACTATCGGGGGCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAataatc                                                                                                  >  1:916360/1‑140 (MQ=255)
                            aCCAGGGCATCTCACCAGAGACGGTTCCGAGTATCTCACTATCGGGGGCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAatcatc                                                                                                  >  2:172184/1‑140 (MQ=255)
                                 ggCATCTCACCAGAGACGGTTTCGAGTATCTCACTATCGGGGGCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGTGGTGCGGTATGGCGCAAAATCATCAGCGt                                                                                             >  1:1469049/1‑140 (MQ=255)
                                 ggCATCTCACCAGAGACGGTTTCGAGTATCTCACTATCGGGGGCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGt                                                                                             >  2:823686/1‑140 (MQ=255)
                                 ggCATCTCACCAGAGACGGTTTCGAGTATCTCACTATCGGGGGCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGt                                                                                             >  2:932535/1‑140 (MQ=255)
                                      ctcACCAGAGACGGTTTCGAGTATCTCACTATCGGGGGCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGc                                                                                        >  2:808405/1‑140 (MQ=255)
                                      ctcACCAGAGACGGTTTCGAGTATCTCACTATCGGGGGCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGc                                                                                        >  2:1463120/1‑140 (MQ=255)
                                      ctcACCAGAGACGGTTTCGAGTATCTCACTATCGGGGGCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGc                                                                                        >  2:1098118/1‑140 (MQ=255)
                                        cACCAGAGACGGTTTCGAGTATCTCACTATCGGGGGCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTg                                                                                      <  2:1476458/140‑1 (MQ=255)
                                         aCCAGAGACGGTTTCGAGTATCTCACTATCGGGGGCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTgg                                                                                     <  1:589264/140‑1 (MQ=255)
                                         aCCAGAGACGGTTTCGAGTATCTCACTATCGGGGGCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTgg                                                                                     <  1:271575/140‑1 (MQ=255)
                                         aCCAGAGACGGTTTCGAGTATCTCACTATCGGGGGCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTgg                                                                                     <  1:1098118/140‑1 (MQ=255)
                                           cAGAGACGGTTTCGAGTATCTCACTATCGGGGGCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGtt                                                                                   <  1:1654118/140‑1 (MQ=255)
                                           cAGAGACGGTTTCGAGTATCTCACTATCGGGGGCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGtt                                                                                   >  1:1437524/1‑140 (MQ=255)
                                              agaCGGTTTCGAGTATCTCACTATCGGGGGCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGcc                                                                                <  1:1012079/140‑1 (MQ=255)
                                                aCGGTTTCGAGTATCTCACTATCGGGGGCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCtt                                                                              >  2:276186/1‑139 (MQ=255)
                                                aCGGTTTCGAGTATCTCACTATCGGGGGCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTg                                                                              >  1:1878123/1‑140 (MQ=255)
                                                 cGGTTTCGAGTATCTCACTATCGGGGGCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGt                                                                             >  1:1976945/1‑140 (MQ=255)
                                                 cGGTTTCGAGTATCTCACTATCGGGGGCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGt                                                                             <  1:188993/140‑1 (MQ=255)
                                                 cGGTTTCGAGTATCTCACTATCGGGGGCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGt                                                                             <  2:445255/140‑1 (MQ=255)
                                                  ggTTTCGAGTATCTCACTATCGGGGGCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTa                                                                            <  2:1878123/140‑1 (MQ=255)
                                                   gTTTCGAGTATCTCACTATCGGGGGCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTAc                                                                           >  2:1404383/1‑140 (MQ=255)
                                                   gTTTCGAGTATCTCACTATCGGGGGCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTAc                                                                           >  2:836873/1‑140 (MQ=255)
                                                          gTATCTCACTATCGGGGGCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCa                                                                    <  2:68971/140‑1 (MQ=255)
                                                           tATCTCACTATCGGGGGCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCaa                                                                   <  1:403707/140‑1 (MQ=255)
                                                            aTCTCACTATCGGGGGCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAAc                                                                  <  2:214081/140‑1 (MQ=255)
                                                            aTCTCACTATCGGGGGCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAAc                                                                  <  1:538136/140‑1 (MQ=255)
                                                            aTCTCACTATCGGGGGCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAAc                                                                  <  2:916941/140‑1 (MQ=255)
                                                            aTCTCACTATCGGGGGCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAAc                                                                  <  1:172184/140‑1 (MQ=255)
                                                                   tATCGGGGGCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCa                                                           >  1:106437/1‑140 (MQ=255)
                                                                     tCGGGGGCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAg                                                         <  1:99686/140‑1 (MQ=255)
                                                                     acGGGGGCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAg                                                         <  2:16400/139‑1 (MQ=255)
                                                                      cGGGGGCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGGCCAAGa                                                        <  1:808405/140‑1 (MQ=255)
                                                                      cGGGGGCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAGa                                                        <  2:1437524/140‑1 (MQ=255)
                                                                       gggggCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAGAt                                                       >  1:585126/1‑140 (MQ=255)
                                                                        ggggCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAGa                                                        >  1:1303819/1‑138 (MQ=255)
                                                                        ggggCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAGa                                                        <  2:1303819/138‑1 (MQ=255)
                                                                          ggCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAGATGgc                                                    >  1:1240378/1‑140 (MQ=255)
                                                                           gCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCTGTGCGGTATGGCGCAAAATCATCAGCTTGCCGCTGGTTGCCTGTACCAGTTCAACATAACCAAGATGgcg                                                   <  2:1248378/140‑1 (MQ=255)
                                                                           gCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAGATGgcg                                                   >  2:868804/1‑140 (MQ=255)
                                                                           gCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAGATGgcg                                                   <  2:1730294/140‑1 (MQ=255)
                                                                             gagaTACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAGATGGCGCa                                                 >  1:949069/1‑140 (MQ=255)
                                                                             gagaTACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAGATGGCGCa                                                 <  1:2013539/140‑1 (MQ=255)
                                                                             gagaTACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAGATGGCGCa                                                 <  1:1523267/140‑1 (MQ=255)
                                                                              agaTACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAGATGGCGCAt                                                <  2:391372/140‑1 (MQ=255)
                                                                              agaTACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAGATGGCGCAt                                                <  2:793437/140‑1 (MQ=255)
                                                                              agaTACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAGATGGCGCAt                                                <  1:223534/140‑1 (MQ=255)
                                                                                      aTCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAGATGGCGCATAGCTTGTa                                        >  2:124646/1‑140 (MQ=255)
                                                                                        ccAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAGATGGCGCATAGCTTGTAAg                                      <  2:585126/140‑1 (MQ=255)
                                                                                        ccAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAGATGGCGCATAGCTTGTAAg                                      <  2:1230598/140‑1 (MQ=255)
                                                                                        ccAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAGATGGCGCATAGCTTGTAAg                                      <  2:1120890/140‑1 (MQ=255)
                                                                                        ccAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAGATGGCGCATAGCTTGTAAg                                      <  1:276186/140‑1 (MQ=255)
                                                                                        ccAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAGATGGCGCATAGCTTGTAAg                                      <  1:1154856/140‑1 (MQ=255)
                                                                                        ccAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGAAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGTCCAAAATGGCGCATAGCTTGTAAg                                      <  2:1801188/140‑1 (MQ=255)
                                                                                        ccAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCAATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAGATGGCGCATAGCTTGTAAg                                      <  2:1364433/140‑1 (MQ=255)
                                                                                        acAGGCCTTCCGAACGCGAAACGCGTTCCAGTTTATCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAGATGGCGCATAGCTTGTAAg                                      <  2:1092748/139‑1 (MQ=255)
                                                                                         cAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCTCTGGTTGCCTGTACCAGTTCAACATGACCAAGATGGCGCATAGCTTGTAAGc                                     >  1:1890412/1‑140 (MQ=255)
                                                                                         cAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAGATGGCGCATAGCTTGTAAg                                      <  1:61419/139‑1 (MQ=255)
                                                                                         cAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAGATGGCGCATAGCTTGTAAg                                      >  2:61419/1‑139 (MQ=255)
                                                                                         cAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAGATGGCGCATAGCTTGTAAGc                                     >  1:1861178/1‑140 (MQ=255)
                                                                                         cAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAGATGGCGCATAGCTTGTAAGc                                     >  1:415944/1‑140 (MQ=255)
                                                                                         cAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAGATGGCGCATAGCTTGTAAGc                                     >  2:659964/1‑140 (MQ=255)
                                                                                          aGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAGATGGCGCATAGCTTGTAAGCt                                    >  2:1465920/1‑140 (MQ=255)
                                                                                          aGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAGATGGCGCATAGCTTGTAAGCt                                    >  2:723096/1‑140 (MQ=255)
                                                                                          aGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAGATGGCGCATAGCTTGTAAGCt                                    >  2:52023/1‑140 (MQ=255)
                                                                                           ggCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAGATGGCGCATAGCTTGTAAGCTg                                   >  2:1880213/1‑140 (MQ=255)
                                                                                           ggCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGACTGTACCAGTTCAACATGACCAAGATGGCGCATAGCTTGTAAGCTg                                   >  2:753632/1‑140 (MQ=255)
                                                                                             ccTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAGATGGCGCATAGCTTGTAAGCTGcc                                 <  2:1528952/140‑1 (MQ=255)
                                                                                             ccTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAGATGGCGCATAGCTTGTAAGCTGcc                                 <  1:124646/140‑1 (MQ=255)
                                                                                                tCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAGATGGCGCATAGCTTGTAAGCTGCCCac                              >  1:1092748/1‑139 (MQ=255)
                                                                                                tCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAGATGGCGCATAGCTTGTAAGCTGCCCAg                              >  1:14045/1‑140 (MQ=255)
                                                                                                tCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAGATGGCGCATAGCTTGTAAGCTGCCCAg                              >  2:1181724/1‑140 (MQ=255)
                                                                                                tCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAGATGGCGCATAGCTTGTAAGCTGCCCAg                              >  1:1734326/1‑140 (MQ=255)
                                                                                                tCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAGATGGCGCATAGCTTGTAAGCTGCCCAg                              >  2:1630095/1‑140 (MQ=255)
                                                                                                        cGAAAAGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAGATGGCGCATAGCTTGTAAGCTGCCCAGACATGccc                      <  2:636521/140‑1 (MQ=255)
                                                                                                             aGCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAGATGGCGCATAGCTTGTAAGCTGCCCAGACATGCCCTGACt                 <  1:1193244/140‑1 (MQ=255)
                                                                                                              gCGTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAGATGGCGCATAGCTTGTAAGCTGCCCAGACATGCCCTGACtt                >  1:320863/1‑140 (MQ=255)
                                                                                                                gTTCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAGATGGCGCATAGCTTGTAAGCTGCCCAGACATGCCCTGACTTTg              <  1:311687/140‑1 (MQ=255)
                                                                                                                  tCCAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAGATGGCGCATAGCTTGTAAGCTGCCCAGACATGCCCTGACTTTggg            <  2:1091034/140‑1 (MQ=255)
                                                                                                                   ccAGTTTTTCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAGATGGCGCATAGCTTGTAAGCTGCCCAGACATGCCCTGACTTTGGgc           <  1:1465920/140‑1 (MQ=255)
                                                                                                                       tttttCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAGATGGCGCATAGCTTGTAAGCTGCCCAGACATGCCCTGACTTTGGgcagca       <  2:402494/140‑1 (MQ=255)
                                                                                                                       tttttCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAGATGGCGCATAGCTTGTAAGCTGCCCAGACATGCCCTGACTTTGGgcagca       <  2:320863/140‑1 (MQ=255)
                                                                                                                       tttttCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAGATGGCGCATAGCTTGTAAGCTGCCCAGACATGCCCTGACTTTGGgcagca       <  2:1867637/140‑1 (MQ=255)
                                                                                                                        ttttCGCGATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAGATGGCGCATAGCTTGTAAGCTGCCCAGACATGCCCTGACTTTGGGCAGCaa      <  1:868804/140‑1 (MQ=255)
                                                                                                                            cgcgATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAGATGGCGCATAGCTTGTAAGCTGCCCAGACATGCCCTGACTTTGGGCAGCAATGCt  >  2:240326/1‑140 (MQ=255)
                                                                                                                            cgcgATCTTCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAGATGGCGCATAGCTTGTAAGCTGCCCAGACATGCCCTGACTTTGGGCAGCAATGCt  <  2:1515472/140‑1 (MQ=255)
                                                                                                                                    |                                                                                                                                   
AAAGTTAAGCGCAACCCGTTTGAGTCATACCAGGGCATCTCACCAGAGACGGTTTCGAGTATCTCACTATCGGGGGCGAGATACAGATCCAGGCCTTCAGAATGCGAAAAGCGTTCCAGTTTTTCGCGATCTGCCGAACTTAGCGGTGCGGTATGGCGCAAAATCATCAGCGTGCCGCTGGTTGCCTGTACCAGTTCAACATGACCAAGATGGCGCATAGCTTGTAAGCTGCCCAGACATGCCCTGACTTTGGGCAGCAATGCT  >  NC_000913/2914228‑2914491

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A