Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F48 I1 R1 508 125.6 4303852 99.2% 4269421 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,923,153 G→T P211H (CCT→CAT)  truC ← tRNA pseudouridine(65) synthase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,923,1530GT100.0% 258.6 / NA 75P211H (CCT→CAT) truCtRNA pseudouridine(65) synthase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (32/43);  total (32/43)

TCCATCCTGACCCGATGGCGCACTGAACTCAACCCTTTCATTTTCAGGAAGCAGACCGCGCCAGCCAAATTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAAGGATGCGTCAATGACAACTGACTGGCATGTAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCAATAATCGGATGACGCAAATGGGCAA  >  NC_000913/2923017‑2923282
                                                                                                                                        |                                                                                                                                 
tcCATCCTGACCCGATGGCGCACTGAACTCAACCCTTTCATTTTCAGGAAGCAGACCGCGCCAGCCAAATTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGAt                                                                                                                                <  2:1567558/140‑1 (MQ=255)
tcCATCCTGACCCGATGGCGCACTGAACTCAACCCTTTCATTTTCAGGAAGCAGACCGCGCCAGCCAAATTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGAt                                                                                                                                <  1:322201/140‑1 (MQ=255)
   aTCCTGACCCGATGGCGCACTGAACTCAACCCTTTCATTTTCAGGAAGCAGACCGCGCCAGCCAAATTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCg                                                                                                                             <  2:1480146/140‑1 (MQ=255)
   aTCCTGACCCGATGGCGCACTGAACTCAACCCTTTCATTTTCAGGAAGCAGACCGCGCCAGCCAAATTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCg                                                                                                                             <  1:706096/140‑1 (MQ=255)
     ccTGACCCGATGGCGCACTGAACTCAACCCTTTCATTTTCAGGAAGCAGACCGCGCCAGCCAAATTGTGATAACGCCTGCATCCAGGTGTCGACCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTc                                                                                                                           >  2:1808150/1‑140 (MQ=255)
       tGACCCGATGGCGCACTGAACTCAACCCTTTCATTTTCAGGAAGCAGACCGCGCCAGCCAAATTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCaa                                                                                                                         <  1:346113/140‑1 (MQ=255)
        gACCCGATGGCGCACTGAACTCAACCCTTTCATTTTCAGGAAGCAGACCGCGCCAGCCAAATTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAAt                                                                                                                        <  2:1563517/140‑1 (MQ=255)
        gACCCGATGGCGCACTGAACTCAACCCTTTCATTTTCAGGAAGCAGACCGCGCCAGCCAAATTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAAt                                                                                                                        <  2:1298302/140‑1 (MQ=255)
          cccGATGGCGCACTGAACTCAACCCTTTCATTTTCAGGAAGCAGACCGCGCCAGCCAAATTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGa                                                                                                                      >  1:273663/1‑140 (MQ=255)
            cGATGGCGCACTGAACTCAACCCTTTCATTTTCAGGAAGCAGACCGCGCCAGCCAAATTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACa                                                                                                                    <  1:403451/140‑1 (MQ=255)
              aTGGCGCACTGAACTCAACCCTTTCATTTTCAGGAAGCAGACCGCGCCAGCCAAATTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAac                                                                                                                  >  1:330651/1‑140 (MQ=255)
              aTGGCGCACTGAACTCAACCCTTTCATTTTCAGGAAGCAGACCGCGCCAGCCAAATTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAac                                                                                                                  >  1:644185/1‑140 (MQ=255)
              aTGGCGCACTGAACTCAACCCTTTCATTTTCAGGAAGCAGACCGCGCCAGCCAAATTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAac                                                                                                                  >  2:1902274/1‑140 (MQ=255)
              aTGGCGCACTGAACTCAACCCTTTCATTTTCAGGAAGCAGACCGCGCCAGCCAAATTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAac                                                                                                                  >  1:197540/1‑140 (MQ=255)
              aTGGCGCACTGAACTCAACCCTTTCATTTTCAGGAAGCAGACCGCGCCAGCCAAATTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAac                                                                                                                  >  2:1816842/1‑140 (MQ=255)
                  cgcACTGAACTCAACCCTTTCATTTTCAGGAAGCAGACCGCGCCAGCCAAATTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAactgac                                                                                                              <  2:1574395/140‑1 (MQ=255)
                   gcACTGAACTCAACCCTTTCATTTTCAGGAAGCAGACCGCGCCAGCCAAATTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAactgact                                                                                                             <  1:1361675/140‑1 (MQ=255)
                    cACTGAACTCAACCCTTTCATTTTCAGGAAGCAGACCGCGCCAGCCAAATTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAactgactg                                                                                                            <  2:273663/140‑1 (MQ=255)
                    cACTGAACTCAACCCTTTCATTTTCAGGAAGCAGACCGCGCCAGCCAAATTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAactgactg                                                                                                            >  2:1337416/1‑140 (MQ=255)
                    cACTGAACTCAACCCTTTCATTTTCAGGAAGCAGACCGCGCCAGCCAAATTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAactgactg                                                                                                            <  2:1599866/140‑1 (MQ=255)
                    cACTGAACTCAACCCTTTCATTTTCAGGAAGCAGACCGCGCCAGCCAAATTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAactgactg                                                                                                            <  1:2143773/140‑1 (MQ=255)
                    cACTGAACTCAACCCTTTCATTTTCAGGAAGCAGACCGCGCCAGCCAAATTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAactgactg                                                                                                            <  1:1236671/140‑1 (MQ=255)
                    cACTGAACTCAACCCTTTCATTTTCAGGAAGCAGACCGCGCCAGCCAAATTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAactgactg                                                                                                            <  1:1941746/140‑1 (MQ=255)
                        gAACTCAACCCTTTCATTTTCAGGAAGCAGACCGCGCCAGCCAAATTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACATCTGGCTGGCAt                                                                                                        <  1:1808150/140‑1 (MQ=255)
                        gAACTCAACCCTTTCATTTTCAGGAAGCAGACCGCGCCAGCCAAATTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAACTGACTGGCAt                                                                                                        <  1:1410864/140‑1 (MQ=255)
                        gAACTCAACCCTTTCATTTTCAGGAAGCAGACCGCGCCAGCAAAATTGTGATAACGCCTGCATCCAGGTGTCTTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAACTGACTGGCAt                                                                                                        <  1:2119508/140‑1 (MQ=255)
                         aaCTCAACCCTTTCATTTTCAGGAAGCAGACCGCGCCAGCCAAATTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACACCTGACTGGCAtt                                                                                                       >  2:1824314/1‑139 (MQ=255)
                         aaCTCAACCCTTTCATTTTCAGGAAGCAGACCGCGCCAGCCAAATTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAACTGACTGGCAtt                                                                                                       >  2:595095/1‑139 (MQ=255)
                         aaCTCAACCCTTTCATTTTCAGGAAGCAGACCGCGCCAGCCAAATTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAACTGACTGGCATg                                                                                                       <  1:221978/140‑1 (MQ=255)
                         aaCTCAACCCTTTCATTTTCAGGAAGCAGACCGCGCCAGCCAAATTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAACTGACTGGCATg                                                                                                       >  1:1328998/1‑140 (MQ=255)
                         aaCTCAACCCTTTCATTTTCAGGAAGCAGACCGCGCCAGCCAAATTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAACTGACTGGCATg                                                                                                       <  2:1328998/140‑1 (MQ=255)
                          aCTCAACCCTTTCATTTTCAGGAAGCAGACCGCGCCAGCCAAATTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAACTGACTGGCATGt                                                                                                      <  2:449137/140‑1 (MQ=255)
                              aaCCCTTTCATTTTCAGGAAGCAGACCGCGCCAGCCAAATTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAACTGACTGGCATGTAGCa                                                                                                  <  1:315323/140‑1 (MQ=255)
                                   tttCATTTTCAGGAAGCAGACCGCGCCAGCCAAATTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAactga                                                                                                               <  2:1881006/122‑1 (MQ=255)
                                   tttCATTTTCAGGAAGCAGACCGCGCCAGCCAAATTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAactga                                                                                                               >  1:1881006/1‑122 (MQ=255)
                                   tttCATTTTCAGGAAGCAGACCGCGCCAGCCAAATTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAACTGACTGGCATGTAGCATTAAc                                                                                             >  2:2093450/1‑140 (MQ=255)
                                   tttCATTTTCAGGAAGCAGACCGCGCCAGCCAAATTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAACTGACTGGCATGTAGCATTAAc                                                                                             <  2:345915/140‑1 (MQ=255)
                                   tttCATTTTCAGGAAGCAGACCGCGCCAGCCAAATTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAACTGACTGGCATGTAGCATTAAc                                                                                             >  2:1088588/1‑140 (MQ=255)
                                   tttCATTTTCAGGAAGCAGACCGCGCCAGCCAAATTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAACTGACTGGCATGTAGCATTAAc                                                                                             <  1:1337416/140‑1 (MQ=255)
                                     tCATTTTCAGGAAGCAGACCGCGCCAGCCAAATTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAACTGACTGGCATGTAGCATTAACCg                                                                                           >  2:451481/1‑140 (MQ=255)
                                       aTTTTCAGGAAGCAGACCGCGCCAGCCAAATTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAACTGACTGGCATGTAGCATTAACCGCt                                                                                         <  2:351150/140‑1 (MQ=255)
                                       aTTTTCAGGAAGCAGACCGCGCCAGCCAAATTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAACTGACTGGCATGTAGCATTAACCGCt                                                                                         <  2:1547609/140‑1 (MQ=255)
                                          ttCAGGAAGCAGACCGCGCCAGCCAAATTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAACTGACTGGCATGTAGCATTAACCGCTGGa                                                                                      >  2:251386/1‑140 (MQ=255)
                                          ttCAGGAAGCAGACCGCGCCAGCCAAATTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAACTGACTGGCATGTAGCATTAACCGCTGGa                                                                                      <  1:1306076/140‑1 (MQ=255)
                                               gAAGCAGACCGCGCCAGCCAAATTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAACTGACTGGCATGTAGCATTAACCGCTGGAGGCCa                                                                                 <  1:1088588/140‑1 (MQ=255)
                                               gAAGCAGACCGCGCCAGCCAAATTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAACTGACTGGCATGTAGCATTAACCGCTGGAGGCCa                                                                                 <  1:1260821/140‑1 (MQ=255)
                                                aaGCAGACCGCGCCAGCCAAATTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAACTGACTGGCATGTAGCATTAACCGCTGGAGGCCaa                                                                                <  2:708128/140‑1 (MQ=255)
                                                 aGCAGACCGCGCCAGCCAAATTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAACTGACTGGCATGTAGCATTAACCGCTGGAGGCCaaa                                                                               <  1:1902274/140‑1 (MQ=255)
                                                         gcgcCAGCCAAATTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAACTGACTGGCATGTAGCATTAACCGCTGGAGGCCAAAATGCTCAg                                                                       <  2:197540/140‑1 (MQ=255)
                                                                 caAATTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAACTGACTGGCATGTAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTg                                                               <  1:1669517/140‑1 (MQ=255)
                                                                 aaaaTTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAACTGACTGGCATGTAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTg                                                               <  2:1415525/139‑1 (MQ=255)
                                                                      tgtgATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAACTGACTGGCATGTAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGAtt                                                          <  1:451481/140‑1 (MQ=255)
                                                                          aTAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAACTGACTGGCATGTAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTgg                                                      >  2:1533484/1‑140 (MQ=255)
                                                                                  tGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAACTGACTGGCATGTAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATc                                              >  1:1119486/1‑140 (MQ=255)
                                                                                    cATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAACTGACTGGCATGTAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGc                                            >  1:1075410/1‑140 (MQ=255)
                                                                                    cATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAACTGACTGGCATGTAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGc                                            >  1:219092/1‑140 (MQ=255)
                                                                                         aGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAACTGACTGGCATGTAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGt                                       <  2:271369/140‑1 (MQ=255)
                                                                                              tcgtcCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAACTGACTGGCATGTAGCATTATCCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCt                                  <  2:330651/140‑1 (MQ=255)
                                                                                                gtcCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAACTGACTGGCATGTAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTAt                                >  1:2139539/1‑140 (MQ=255)
                                                                                                gtcCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAACTGACTGGCATGTAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTAt                                >  2:643398/1‑140 (MQ=255)
                                                                                                gtcCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAACTGACTGGCATGTAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTAt                                <  1:1438154/140‑1 (MQ=255)
                                                                                                           cgTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAACTGACTGGCATGTAGCATTAACCGCTTGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCAATAATc                     >  2:373782/1‑140 (MQ=255)
                                                                                                           cgTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAACTGACTGGCATGTAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCaataatt                     >  2:1893746/1‑139 (MQ=255)
                                                                                                           cgTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAACTGACTGGCATGTAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCaataatt                     >  2:421783/1‑139 (MQ=255)
                                                                                                           cgTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAACTGACTGGCATGTAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCAATAATc                     >  2:1087615/1‑140 (MQ=255)
                                                                                                           cgTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAACTGACTGGCATGTAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCAATAATc                     >  1:445901/1‑140 (MQ=255)
                                                                                                           cgTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAACTGACTGGCATGTAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCAATAATc                     >  1:1788200/1‑140 (MQ=255)
                                                                                                           cgTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAACTGACTGGCATGTAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCAATAATc                     >  1:113892/1‑140 (MQ=255)
                                                                                                           cgTGAATAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAACTGACTGGCATGGAGCATTAACCGCTGGAGGCCAAAATCCTCAACACCGTTCCGACTCGCGCGTAAATTGCCATTGTTGCTATCGCCaatcaac                     >  2:843082/1‑136 (MQ=255)
                                                                                                                 tAGTCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAACTGACTGGCATGTAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCAATAATCGGATGa               <  1:251386/140‑1 (MQ=255)
                                                                                                                    tCAGCGGCTCGCCAGTAAAATGATGCGTCAATGACAACTGACTGGCATGTAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCAATAATCGGATGACGc            >  1:1047260/1‑140 (MQ=255)
                                                                                                                     aaGCGGCTAGCCAGTAAAATGATGCGTCAATGACCACTGACTGACATGTAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCAATAATCGGATGACGCa           <  1:843082/139‑1 (MQ=255)
                                                                                                                       gCGGCTCGCCAGTAAAATGATGCGTCAATGACAACTGACTGGCATGTAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCAATAATCGGATGACGCaaa         <  2:2139539/140‑1 (MQ=255)
                                                                                                                             cGCCAGTAAAATGATGCGTCAATGACAACTGACTGGCATGTAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCAATAATCGGATGACGCAAATGGGCa   >  2:44280/1‑140 (MQ=255)
                                                                                                                             cGCCAGTAAAATGATGCGTCAATGACAACTGACTGGCATGTAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCAATAATCGGATGACGCAAATGGGCa   >  1:2012277/1‑140 (MQ=255)
                                                                                                                              gacAGTAAAATGATGCGTCAATGACAACTGACTGGCATGTAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCAATAATCGGATGACGCAAATGGGCaa  <  2:113892/138‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                 
TCCATCCTGACCCGATGGCGCACTGAACTCAACCCTTTCATTTTCAGGAAGCAGACCGCGCCAGCCAAATTGTGATAACGCCTGCATCCAGGTGTCGTCCAGGCCCGCGTGAATAGTCAGCGGCTCGCCAGTAAAAGGATGCGTCAATGACAACTGACTGGCATGTAGCATTAACCGCTGGAGGCCAAAATGCTCAGCACCGCTGCGATTCTGGCGTAAATCGCCATGTTTGCTATCGCCAATAATCGGATGACGCAAATGGGCAA  >  NC_000913/2923017‑2923282

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A