Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A19 F48 I1 R1	83	81.6	2760494	99.1%	2735649	139.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,926,893	G→T	G196C (GGT→TGT)	ppnN →	nucleotide 5'‑monophosphate nucleosidase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,926,893	0	G	T	98.8%	298.4 / ‑3.1	84	G196C (GGT→TGT)	ppnN	nucleotide 5'‑monophosphate nucleosidase
Reads supporting (aligned to +/- strand): ref base G (1/0); new base T (50/33); total (51/33)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.24e-01

GGTGGTCTGCTGGGGCGGTCACTCAATTAACGAAAACGAGTATTTGTATGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAAGGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCG  >  NC_000913/2926757‑2927022

ggtggtCTGCTGGGGCGGTCACTCAATTAACGAAAACGAGTATTTGTATGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAAtgtg                                                                                                                                <  2:621714/140‑1 (MQ=255)

  tggtCTGCTGGGGCGGTCACTCAATTAACGAAAACGAGTATTTGTATGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGtgct                                                                                                                              <  1:936384/140‑1 (MQ=255)

     tCTGCTGGGGCGGTCACTCAATTAACGAAAACGAGTATTTGTATGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCg                                                                                                                           >  2:309358/1‑140 (MQ=255)

      ctgctgGGGCGGTCACTCAATTAACGAAAACGAGTATTTGTATGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCgg                                                                                                                          >  1:703403/1‑140 (MQ=255)

        gctgGGGCGGTCACTCAATTAACGAAAACGAGTATTTGTATGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTc                                                                                                                        >  1:367951/1‑140 (MQ=255)

         ctgGGGCGGTCACTCAATTAACGAAAACGAGTATTTGTATGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCg                                                                                                                       >  2:911524/1‑140 (MQ=255)

          tgGGGCGGTCACTCAATTAACGAAAACGAGTATTTGTATGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCgg                                                                                                                      <  1:997806/140‑1 (MQ=255)

            gggCGGTCACTCAATTAACGAAAACGAGTATTTGTATGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGac                                                                                                                    <  2:824360/140‑1 (MQ=255)

            gggCGGTCACTCAATTAACGAAAACGAGTATTTGTATGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGac                                                                                                                    <  1:873189/140‑1 (MQ=255)

                 gTCACTCAATTAACGAAAACGAGTATTTGTATGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACAcgcg                                                                                                               >  1:1082785/1‑140 (MQ=255)

                 gTCACTCAATTAACGAAAACGAGTATTTGTATGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACAcgcg                                                                                                               >  1:351882/1‑140 (MQ=255)

                 gTCACTCAATTAACGAAAACGAGTATTTGTATGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACAcgcg                                                                                                               >  1:225367/1‑140 (MQ=255)

                    aCTCAATTAACGAAAACGAGTATTTGTATGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCgcag                                                                                                            <  1:53978/140‑1 (MQ=255)

                    aCTCAATTAACGAAAACGAGTATTTGTATGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCgcag                                                                                                            <  2:309072/140‑1 (MQ=255)

                      tCAATTAACGAAAACGAGTATTTGTATGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCgcagca                                                                                                          <  2:1149894/140‑1 (MQ=255)

                        aaTTAACGAAAACGAGTATTTGTATGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCagcagc                                                                                                        <  1:753810/140‑1 (MQ=255)

                        aaTTAACGAAAACGAGTATTTGTATGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCagcagc                                                                                                        <  2:419277/140‑1 (MQ=255)

                        aaTTAACGAAAACGAGTATTTGTATGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCagcagc                                                                                                        <  2:951156/140‑1 (MQ=255)

                        aaTTAACGAAAACGAGTATTTGTATGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCagcagc                                                                                                        <  1:369936/140‑1 (MQ=255)

                        aaTTAACGAAAACGAGTATTTGTATGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGAGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCagcagc                                                                                                        >  2:1154272/1‑140 (MQ=255)

                          ttAACGAAAACGAGTATTTGTATGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGt                                                                                                      >  2:1007575/1‑140 (MQ=255)

                                aaaaCGAGTATTTGTATGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACaaa                                                                                                >  2:1102006/1‑140 (MQ=255)

                                  aaCGAGTATTTGTATGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGa                                                                                              >  1:1356028/1‑140 (MQ=255)

                                    cGAGTATTTGTATGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACa                                                                                            >  1:517362/1‑140 (MQ=255)

                                        tATTTGTATGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTct                                                                                        >  2:1047831/1‑139 (MQ=255)

                                         aTTTGTATGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGt                                                                                       >  2:766364/1‑140 (MQ=255)

                                            tGTATGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGtttt                                                                                    <  1:309358/140‑1 (MQ=255)

                                            tGTATGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGtttt                                                                                    <  2:351882/140‑1 (MQ=255)

                                            tGTATGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGtttt                                                                                    <  1:906115/140‑1 (MQ=255)

                                             gTATGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTa                                                                                   <  1:1309808/140‑1 (MQ=255)

                                              tATGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTAt                                                                                  <  2:517362/140‑1 (MQ=255)

                                                tGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTAttt                                                                                >  2:225538/1‑139 (MQ=255)

                                                tGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTg                                                                                >  1:1088845/1‑140 (MQ=255)

                                                 gCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTgg                                                                               <  2:1364857/140‑1 (MQ=255)

                                                 gCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTgg                                                                               <  2:35880/140‑1 (MQ=255)

                                                 gCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTgg                                                                               <  1:820102/140‑1 (MQ=255)

                                                  cccGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGt                                                                              >  2:592442/1‑140 (MQ=255)

                                                  cccGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGt                                                                              >  2:805468/1‑140 (MQ=255)

                                                     gtcgcgtcgGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATg                                                                           >  1:694264/1‑140 (MQ=255)

                                                     gtcgcgtcgGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATg                                                                           >  1:349441/1‑140 (MQ=255)

                                                     gtcgcgtcgGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATg                                                                           >  1:226821/1‑140 (MQ=255)

                                                      tcgcgtcgGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGa                                                                          >  2:931491/1‑140 (MQ=255)

                                                      tcgcgtcgGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGa                                                                          >  1:101879/1‑140 (MQ=255)

                                                      tcgcgtcgGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGa                                                                          >  1:1232084/1‑140 (MQ=255)

                                                       cgcgtcgGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGAc                                                                         >  1:33118/1‑140 (MQ=255)

                                                       cgcgtcgGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGAc                                                                         >  2:1276406/1‑140 (MQ=255)

                                                                      cTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTAt                                                          >  2:195956/1‑140 (MQ=255)

                                                                        gggCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATcg                                                        >  1:183139/1‑140 (MQ=255)

                                                                               cGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGa                                                 <  2:225367/140‑1 (MQ=255)

                                                                               cGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGa                                                 >  1:225989/1‑140 (MQ=255)

                                                                                gTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGaa                                                <  1:225538/140‑1 (MQ=255)

                                                                                   aGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCg                                             >  2:290118/1‑140 (MQ=255)

                                                                                   aGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCg                                             >  1:30118/1‑140 (MQ=255)

                                                                                    gCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGc                                            <  1:911524/140‑1 (MQ=255)

                                                                                         atatCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAAc                                       >  2:860682/1‑140 (MQ=255)

                                                                                            tCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCg                                    <  2:694264/140‑1 (MQ=255)

                                                                                                cACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTgt                                >  2:256748/1‑139 (MQ=255)

                                                                                                cACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTgg                                >  1:452944/1‑140 (MQ=255)

                                                                                                cACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTgg                                >  1:555217/1‑140 (MQ=255)

                                                                                                  ccGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTc                              >  2:343127/1‑140 (MQ=255)

                                                                                                  ccGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTc                              >  1:301840/1‑140 (MQ=255)

                                                                                                  ccGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTc                              >  2:947435/1‑140 (MQ=255)

                                                                                                  ccGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTc                              >  2:468842/1‑140 (MQ=255)

                                                                                                    ggCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCaa                            >  2:566067/1‑140 (MQ=255)

                                                                                                     gCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAAc                           >  2:1168091/1‑140 (MQ=255)

                                                                                                     gCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAAc                           <  2:653404/140‑1 (MQ=255)

                                                                                                     gCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAAc                           >  1:653404/1‑140 (MQ=255)

                                                                                                      cTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACg                          <  2:452944/140‑1 (MQ=255)

                                                                                                       tgtgGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGa                         >  2:1366601/1‑140 (MQ=255)

                                                                                                        gtgGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGaa                        <  2:967817/140‑1 (MQ=255)

                                                                                                        gtgGTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGaa                        <  1:1047831/140‑1 (MQ=255)

                                                                                                           gTCCGGGAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTg                     <  2:719488/140‑1 (MQ=255)

                                                                                                                ggAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGatcat                <  1:931491/140‑1 (MQ=255)

                                                                                                                ggAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGatcat                >  1:295702/1‑140 (MQ=255)

                                                                                                                 gAGCGATGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGatcatc               <  1:1174947/140‑1 (MQ=255)

                                                                                                                     gATGGAAGCGCCGATGAAAGGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGc           >  1:1134331/1‑140 (MQ=255)

                                                                                                                      aTGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGcc          <  2:33118/140‑1 (MQ=255)

                                                                                                                      aTGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGcc          >  2:1224146/1‑140 (MQ=255)

                                                                                                                      aTGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGcc          >  2:74627/1‑140 (MQ=255)

                                                                                                                      aTGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGcc          >  2:1128753/1‑140 (MQ=255)

                                                                                                                      aTGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGcc          >  2:889943/1‑140 (MQ=255)

                                                                                                                       tGGAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCa         >  2:381197/1‑140 (MQ=255)

                                                                                                                        ggAAGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAg        <  1:727668/140‑1 (MQ=255)

                                                                                                                           aGCGCCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGata     <  1:566067/140‑1 (MQ=255)

                                                                                                                              gcCGATGAAATGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCg  >  1:932984/1‑140 (MQ=255)

GGTGGTCTGCTGGGGCGGTCACTCAATTAACGAAAACGAGTATTTGTATGCCCGTCGCGTCGGAAACCAGCTGGGCCTGCGTGAGCTGAATATCTGCACCGGCTGTGGTCCGGGAGCGATGGAAGCGCCGATGAAAGGTGCTGCGGTCGGACACGCGCAGCAGCGTTACAAAGACAGTCGTTTTATTGGTATGACAGAGCCGTCGATTATCGCCGCTGAACCGCCTAACCCGCTGGTCAACGAATTGATCATCATGCCAGATATCG  >  NC_000913/2926757‑2927022

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A