Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F48 I1 R1
|
508 |
125.6 |
4303852 |
99.2% |
4269421 |
139.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,942,008 |
G→T |
A187D (GCT→GAT) |
gcvA ← |
DNA‑binding transcriptional dual regulator GcvA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,942,008 | 0 | G | T | 99.1%
| 381.4
/ ‑3.1
| 112 | A187D (GCT→GAT) | gcvA | DNA‑binding transcriptional dual regulator GcvA |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base T (64/47); total (65/47) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.57e-01 |
Only 100 of 112 total aligned reads displayed.
TGGATAGCCGCTTGCAGCACCATGGCGCTATGGCTAAAAATTGGCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTAGCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAGCCCCGGCCAGTTGCCCCGACCATAAAATATCGCCAC > NC_000913/2941873‑2942141
|
tGGATAGCCGCTTGCAGCACCATGGCGCTATGGCTAAAAATTGGCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAg > 1:61084/1‑140 (MQ=255)
tGGATAGCCGCTTGCAGCACCATGGCGCTATGGCTAAAAATTGGCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAg < 1:175958/140‑1 (MQ=255)
tGGATAGCCGCTTGCAGCACCATGGCGCTATGGCTAAAAATTGGCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAg < 2:30291/140‑1 (MQ=255)
cTTGCAGCACCATGGCGCTATGGCTAAAAATTGGCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGgt < 2:2088154/140‑1 (MQ=255)
cTTGCAGCACCATGGCGCTATGGCTAAAAATTGGCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGgt < 2:552399/140‑1 (MQ=255)
tGCAGCACCATGGCGCTATGGCTAAAAATTGGCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGgtgt > 1:207061/1‑140 (MQ=255)
gcagcaCCATGGCGCTATGGCTAAAAATTGGCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTc < 2:976409/140‑1 (MQ=255)
caCCATGGCGCTATGGCTAAAAATTGGCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCa > 2:1858719/1‑140 (MQ=255)
cATGGCGCTATGGCTAAAAATTGGCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAgg > 2:1605634/1‑140 (MQ=255)
aTGGCGCTATGGCTAAAAATTGGCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAggg > 1:321325/1‑140 (MQ=255)
cTATGGCTAAAAATTGGCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTc > 1:2026018/1‑140 (MQ=255)
tATGGCTAAAAATTGGCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCg < 1:1903772/140‑1 (MQ=255)
tATGGCTAAAAATTGGCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCg < 1:1694700/140‑1 (MQ=255)
tATGGCTAAAAATTGGCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCg < 2:6443/140‑1 (MQ=255)
aTGGCTAAAAATTGGCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGc < 2:61084/140‑1 (MQ=255)
tGGCTAAAAATTGGCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGcc > 1:1955533/1‑140 (MQ=255)
tGGCTAAAAATTGGCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGc > 2:540710/1‑139 (MQ=255)
tGGCTAAAAATTGGCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGc < 1:540710/139‑1 (MQ=255)
ggCTAAAAATTGGCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCa < 1:380525/140‑1 (MQ=255)
gCTAAAAATTGGCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCat > 2:609910/1‑139 (MQ=255)
ttGGCCCTTGCTGAACGTTGATATGATTTAATCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGt > 1:1493733/1‑140 (MQ=255)
tGGCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTa < 1:347356/140‑1 (MQ=255)
tGGCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTa < 2:1955533/140‑1 (MQ=255)
gCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAgc > 1:1863442/1‑140 (MQ=255)
gCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAgc < 1:1523851/140‑1 (MQ=255)
gCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAgc < 2:1645910/140‑1 (MQ=255)
gCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAgc < 2:2026018/140‑1 (MQ=255)
ttGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAgcggcg < 1:1865375/140‑1 (MQ=255)
tGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGa > 2:261554/1‑140 (MQ=255)
gTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCg < 1:583554/140‑1 (MQ=255)
tGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGc > 1:1193375/1‑140 (MQ=255)
tGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGc < 1:1299681/140‑1 (MQ=255)
tGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGc > 2:1209960/1‑140 (MQ=255)
tGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGc > 2:590291/1‑140 (MQ=255)
tGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGc < 1:1933534/140‑1 (MQ=255)
aTTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCaataaat > 1:697595/1‑140 (MQ=255)
tttAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCaataaata > 1:1932916/1‑140 (MQ=255)
tttAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCaataaata > 2:1605615/1‑140 (MQ=255)
aaCCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAGGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTc > 1:986698/1‑140 (MQ=255)
aCCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCg < 1:1605634/140‑1 (MQ=255)
aCCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCg > 2:537293/1‑140 (MQ=255)
aCCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCg > 2:1878804/1‑140 (MQ=255)
cAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGt < 1:261554/140‑1 (MQ=255)
cAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGt < 2:697595/140‑1 (MQ=255)
aCTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTAc > 2:864090/1‑140 (MQ=255)
aCTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTAc > 2:905214/1‑140 (MQ=255)
tCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGtt > 2:876864/1‑140 (MQ=255)
gggTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGGTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGtttt > 1:1112213/1‑140 (MQ=255)
tataTGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTcc < 1:609910/140‑1 (MQ=255)
tatGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCAc > 1:423131/1‑140 (MQ=255)
gTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCg > 2:949478/1‑140 (MQ=255)
tGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAg > 2:1193468/1‑140 (MQ=255)
gCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTc > 1:1361888/1‑130 (MQ=255)
gCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTc < 1:1634684/130‑1 (MQ=255)
gCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTc > 2:1634684/1‑130 (MQ=255)
gCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTc < 2:1361888/130‑1 (MQ=255)
gCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAGc > 2:288977/1‑140 (MQ=255)
gCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAGc > 1:249949/1‑140 (MQ=255)
ccAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAGcc < 1:905214/140‑1 (MQ=255)
ccAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAGcc > 2:1458305/1‑140 (MQ=255)
ccAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAGcc > 1:877934/1‑140 (MQ=255)
ccAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAGcc > 2:947950/1‑140 (MQ=255)
ccAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAGcc > 1:447970/1‑140 (MQ=255)
ccAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGAGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAGcc < 2:654015/140‑1 (MQ=255)
gTCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAGCCCCg < 1:107398/140‑1 (MQ=255)
tCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAGCCCCgg > 2:71002/1‑140 (MQ=255)
tCACGGCGCGAAGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAGCCCCgg > 2:629564/1‑140 (MQ=255)
cgcgAAGCATCATGTAATAACGTATGTTTAGCCAGATCTTCCGGTGTCTTCAAGGGCTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAGCCCCGGCCAGtt > 2:1784470/1‑140 (MQ=255)
aaGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAGCCCCGGCCAGTTGccc < 1:1878804/140‑1 (MQ=255)
aGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAGCCCCGGCCAGTTGcccc < 1:316701/140‑1 (MQ=255)
aGCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAGCCCCGGCCAGTTGcccc < 1:629564/140‑1 (MQ=255)
gCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAGCCCCGGCCAGTTGCCCCg < 1:1193468/140‑1 (MQ=255)
gCATCATGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAGCCCCGGCCAGTTGCCCCg < 1:1652431/140‑1 (MQ=255)
catcatGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAGCCCCGGCCAGTTGCCCCGa < 1:1442553/140‑1 (MQ=255)
catcatGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAGCCCCGGCCAGTTGCCCCGa < 1:260279/140‑1 (MQ=255)
catcatGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAGCCCCGGCCAGTTGCCCCGa < 2:1352597/140‑1 (MQ=255)
catGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAGCCCCGGCCAGTTGCCCCGACCa > 2:909591/1‑140 (MQ=255)
catGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAGCCCCGGCCAGTTGCCCCGACCa < 1:980762/140‑1 (MQ=255)
catGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAGCCCCGGCCAGTTGCCCCGACCa > 1:958481/1‑140 (MQ=255)
catGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAGCCCCGGCCAGTTGCCCCGACCa < 1:241244/140‑1 (MQ=255)
atGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCTCCCGTAGCCCCGGCCAGTTGCCCCGACCAt < 2:1112213/140‑1 (MQ=255)
tGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAGCCCCGGCCAGTTGCCCCGACCATa > 1:1007657/1‑140 (MQ=255)
tGTAATAACGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAGCCCCGGCCAGTTGCCCCGACCATa > 1:20594/1‑140 (MQ=255)
taaCGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAGCCCCGGCCAGTTGCCCCGACCATAAAatt > 2:1719257/1‑139 (MQ=255)
taaCGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAGCCCCGGCCAGTTGCCCCGACCATAAAata > 1:855564/1‑140 (MQ=255)
taaCGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAGCCCCGGCCAGTTGCCCCGACCATAAAata > 1:633118/1‑140 (MQ=255)
taaCGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAGCCCCGGCCAGTTGCCCCGACCATAAAata > 1:624134/1‑140 (MQ=255)
cGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAGCCCCGGCCAGTTGCCCCGACCATAAAATATCg > 2:950167/1‑140 (MQ=255)
cGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAGCCCCGGCCAGTTGCCCCGACCATAAAATATCg > 1:1015014/1‑140 (MQ=255)
cGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAGCCCCGGCCAGTTGCCCCGACCATAAAATATCg > 2:1566203/1‑140 (MQ=255)
cGTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAGCCCCGGCCAGTTGCCCCGACCATAAAATATCg > 1:2125085/1‑140 (MQ=255)
gTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAGCCCCGGCCAGTTGCCCCGACCATAAAATATCGc < 2:633118/140‑1 (MQ=255)
gTATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAGCCCCGGCCAGTTGCCCCGACCATAAAATATCGc < 1:1651004/140‑1 (MQ=255)
tATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAGCCCCGGCCAGTTGCCCCGACCATAAAATATCGcc > 2:501350/1‑140 (MQ=255)
tATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAGCCCCGGCCAGTTGCCCCGACCATAAAATATCGcc > 2:435951/1‑140 (MQ=255)
tATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAGCCCCGGCCAGTTGCCCCGACCATAAAATATCGcc < 2:1932916/140‑1 (MQ=255)
tATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAGCCCCGGCCAGTTGCCCCGACCATAAAATATCGcc > 1:903040/1‑140 (MQ=255)
tATGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAGCCCCGGCCAGTTGCCCCGACCATAAAATATCGcc > 1:1845536/1‑140 (MQ=255)
tGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAGCCCCGGCCAGTTGCCCCGACCATAAAATATCGCcac > 1:910887/1‑140 (MQ=255)
tGTTTATCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAGCCCCGGCCAGTTGCCCCGACCATAAAATATCGCcac > 1:1127584/1‑140 (MQ=255)
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TGGATAGCCGCTTGCAGCACCATGGCGCTATGGCTAAAAATTGGCCCTTGCTGAACGTTGATATGATTTAACCCCAACTGTCGGGTATATGTCTGCCAGTCACGGCGCGAAGCATCATGTAATAACGTATGTTTAGCCAGATCTTCCGGTGTCTTCAAGGGTTTTTCGCCAGTCAGCAGTAGCGGCGAACACACCGGCAATAAATATTCGGCGTACAGTTTTTCCACCCGTAGCCCCGGCCAGTTGCCCCGACCATAAAATATCGCCAC > NC_000913/2941873‑2942141
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
