Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F48 I1 R1 508 125.6 4303852 99.2% 4269421 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,943,247 C→A intergenic (‑102/‑90) ygdI ← / → csdA DUF903 domain‑containing lipoprotein YgdI/cysteine sulfinate desulfinase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,943,2470CA100.0% 497.7 / NA 143intergenic (‑102/‑90)ygdI/csdADUF903 domain‑containing lipoprotein YgdI/cysteine sulfinate desulfinase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (72/71);  total (72/71)

Only 100 of 145 total aligned reads displayed.

CATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCTTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCCAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCGAGGAGTACCATGAACG‑TTTTTAATCCCGCGCAGTTTCGCGCCCAGTTTCCCGCA  >  NC_000913/2943110‑2943381
                                                                                                                                         |                                                                                                                                       
cATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCTTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAg                                                                                                                                       <  1:411164/140‑1 (MQ=255)
       gCAGAAATAATTGCGGCAGTCTTTTTCATCATCTTCTCCTTAAAGCGATTAATAAATCTTAATAGGATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATcc                                                                                                                                >  2:1953442/1‑140 (MQ=255)
          gAAATAATTGCGGCAGTCTTTTTCATCATCTTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGa                                                                                                                             >  2:1191749/1‑140 (MQ=255)
           aaaTAATTGCGGCAGTCTTTTTCATCATCTTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGAt                                                                                                                            <  1:825529/140‑1 (MQ=255)
                 ttGCGGCAGTCTTTTTCATCATCTTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCt                                                                                                                      >  1:433933/1‑140 (MQ=255)
                  tGCGGCAGTCTTTTTCATCATCTTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTg                                                                                                                     <  1:858719/140‑1 (MQ=255)
                  tGCGGCAGTCTTTTTCATCATCTTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTg                                                                                                                     <  1:1775884/140‑1 (MQ=255)
                  tGCGGCAGTCTTTTTCATCATCTTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTg                                                                                                                     <  1:1715249/140‑1 (MQ=255)
                    cGGCAGTCTTTTTCATCATCTTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCATGGATATCCAGATAATTCTGAt                                                                                                                   <  2:445395/140‑1 (MQ=255)
                     ggCAGTCTTTTTCATCATCTTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATg                                                                                                                  >  1:1125512/1‑140 (MQ=255)
                       cAGTCTTTTTCATCATCTTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGt                                                                                                                >  1:871876/1‑140 (MQ=255)
                            tttttCATCATCTTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCa                                                                                                           <  2:322257/140‑1 (MQ=255)
                            tttttCATCATCTTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCa                                                                                                           <  1:611405/140‑1 (MQ=255)
                            tttttCATCATCTTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCa                                                                                                           <  1:495696/140‑1 (MQ=255)
                            tttttCATCATCTTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCa                                                                                                           <  1:2049558/140‑1 (MQ=255)
                            tttttCATCATCTTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCa                                                                                                           <  1:1958061/140‑1 (MQ=255)
                            tttttCATCATCTTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCa                                                                                                           <  1:1524889/140‑1 (MQ=255)
                              tttCATCATCTTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCAct                                                                                                         <  2:1406400/140‑1 (MQ=255)
                              tttCATCATCTTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCAct                                                                                                         <  1:1000453/140‑1 (MQ=255)
                                    catcTTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCAct                                                                                                         >  1:1556863/1‑134 (MQ=255)
                                    catcTTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCAct                                                                                                         <  2:1556863/134‑1 (MQ=255)
                                       cttctCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTa                                                                                                <  1:1025168/140‑1 (MQ=255)
                                                aaaGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGa                                                                                       >  1:259637/1‑140 (MQ=255)
                                                  aGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAAt                                                                                     >  1:1712909/1‑140 (MQ=255)
                                                     gATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAAtttt                                                                                  >  2:1715097/1‑140 (MQ=255)
                                                       ttAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTgt                                                                                >  2:1013158/1‑139 (MQ=255)
                                                       ttAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGc                                                                                >  1:1205783/1‑140 (MQ=255)
                                                       ttAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGc                                                                                >  1:1132866/1‑140 (MQ=255)
                                                       ttAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGc                                                                                <  2:1712909/140‑1 (MQ=255)
                                                        taataaATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCg                                                                               <  2:1377374/140‑1 (MQ=255)
                                                             aaTCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACg                                                                          <  2:1205783/140‑1 (MQ=255)
                                                             aaTCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACg                                                                          <  1:484928/140‑1 (MQ=255)
                                                               tCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGAt                                                                        <  1:665953/140‑1 (MQ=255)
                                                               tCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGAt                                                                        <  1:1013728/140‑1 (MQ=255)
                                                               tCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGAt                                                                        <  1:1399009/140‑1 (MQ=255)
                                                                   aaTAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGt                                                                    >  1:1421273/1‑140 (MQ=255)
                                                                   aaTAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGt                                                                    >  2:2038997/1‑140 (MQ=255)
                                                                    aTAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTg                                                                   >  2:1808008/1‑140 (MQ=255)
                                                                     tAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGc                                                                  >  2:1049456/1‑140 (MQ=255)
                                                                      aGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCa                                                                 <  1:841851/140‑1 (MQ=255)
                                                                      aGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCa                                                                 <  1:106761/140‑1 (MQ=255)
                                                                        tATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATc                                                               >  1:1147285/1‑140 (MQ=255)
                                                                        tATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACAATCGGTGCATc                                                               <  1:1808008/140‑1 (MQ=255)
                                                                          ttGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACg                                                                          >  1:536216/1‑127 (MQ=255)
                                                                          ttGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCaa                                                             >  2:1930029/1‑140 (MQ=255)
                                                                          ttGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCaa                                                             >  2:1018843/1‑140 (MQ=255)
                                                                          ttGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCaa                                                             >  2:241265/1‑140 (MQ=255)
                                                                           tGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAg                                                            <  2:362956/140‑1 (MQ=255)
                                                                             aTTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGcc                                                          >  1:1879957/1‑140 (MQ=255)
                                                                              ttAACAGGCTAAAATTAACGCCTAACGCTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTTACGATCGGTGCATCAAGCCg                                                         <  2:433933/140‑1 (MQ=255)
                                                                               tAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCga                                                        <  1:1701302/140‑1 (MQ=255)
                                                                                aaCAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCgag                                                       <  2:1780534/140‑1 (MQ=255)
                                                                                aaCAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCgag                                                       <  1:1076577/140‑1 (MQ=255)
                                                                                  cAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCgagga                                                     >  1:505377/1‑140 (MQ=255)
                                                                                  aaGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCgagga                                                     <  2:888207/139‑1 (MQ=255)
                                                                                    ggCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCGAGGAGt                                                   >  1:856738/1‑140 (MQ=255)
                                                                                     gCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCGAGGAGTa                                                  >  1:1337902/1‑140 (MQ=255)
                                                                                       tAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCa                                                                 <  2:584366/123‑1 (MQ=255)
                                                                                       tAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCGAGGAGTAcc                                                >  2:788938/1‑140 (MQ=255)
                                                                                           aTTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCGAGGAGTACCATGa                                            <  2:1459707/140‑1 (MQ=255)
                                                                                             tAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCGAGGAGTACCATGAAc                                          <  2:1421273/140‑1 (MQ=255)
                                                                                             tAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCGAGGAGTACCATGAAc                                          <  2:1879957/140‑1 (MQ=255)
                                                                                             tAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCGAGGAGTACCATGAAc                                          <  1:1013158/140‑1 (MQ=255)
                                                                                              aaCGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCGAGGAGTACCATGAACg                                         >  1:1902898/1‑140 (MQ=255)
                                                                                                   cTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCGAGGAGTACCATGAACG‑ttttt                                   >  1:91841/1‑140 (MQ=255)
                                                                                                    tAACACTATTCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCGAGGAGTACCATGAACG‑TTTTTa                                  >  1:324704/1‑140 (MQ=255)
                                                                                                            ttCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCGAGGAGTACCATGAACG‑TTTTTAATCCcgcg                          >  2:123507/1‑140 (MQ=255)
                                                                                                             tCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCGAGGAGTACCATGAACG‑TTTTTAATCCCgcgc                         >  2:2148677/1‑140 (MQ=255)
                                                                                                             tCAGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCGAGGAGTACCATGAACG‑TTTTTAATCCCgcgc                         >  1:925335/1‑140 (MQ=255)
                                                                                                               aGCATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCGAGGAGTACCATGAACG‑TTTTTAATCCCGCGCAg                       >  1:1022129/1‑140 (MQ=255)
                                                                                                                 cATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCGAGGAGTACCATGAACG‑TTTTTAATCCCGCGCAGtt                     >  2:1290228/1‑140 (MQ=255)
                                                                                                                 cATATGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTCATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCGAGGAGTACCATGAACG‑TTTTTAATCCCGCGCAGtt                     >  1:377279/1‑140 (MQ=255)
                                                                                                                  atatGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCGAGGAGTACCATGAACG‑TTTTTAATCCCGCGCAGttt                    >  2:1238816/1‑140 (MQ=255)
                                                                                                                    atGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCGAGGAGTACCATGAACG‑TTTTTAATCCCGCGCAGTTTcg                  >  2:1966432/1‑140 (MQ=255)
                                                                                                                    atGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCGAGGAGTACCATGAACG‑TTTTTAATCCCGCGCAGTTTcg                  >  1:1117689/1‑140 (MQ=255)
                                                                                                                     tGTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCGAGGAGTACCATGAACG‑TTTTTAATCCCGCGCAGTTTcgc                 <  1:629577/140‑1 (MQ=255)
                                                                                                                      gTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCGAGGAGTACCATGAACG‑TTTTTAATc                               <  1:2147573/125‑1 (MQ=255)
                                                                                                                      gTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCGAGGAGTACCATGAACG‑TTTTTAATc                               >  2:2147573/1‑125 (MQ=255)
                                                                                                                      gTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCGAGGAGTACCATGAACG‑TTTTTAATCCCGCGCAGTTTcgcg                >  1:1116519/1‑140 (MQ=255)
                                                                                                                      gTTACTTACGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGAATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCGAGGAGTACCATGAACG‑TTTTTAATCCCGCGCAGTTTcgcg                <  1:1966432/140‑1 (MQ=255)
                                                                                                                        tacttacGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCGAGGAGTCCCATGAACG‑TTTTTAATCCCGCGCAGTTTCGCGcc              <  2:1125512/140‑1 (MQ=255)
                                                                                                                        tacttacGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCGAGGAGTACCATGAACG‑TTTTTAATCCCGCGCAGTTTCGCGcc              <  1:1191749/140‑1 (MQ=255)
                                                                                                                           ttacGCGGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCGAGGAGTACCATGAACG‑TTTTTAATCCCGCGCAGTTTCGCGCCCAg           >  1:1727964/1‑140 (MQ=255)
                                                                                                                               gcgGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCGAGGAGTACCATGAACG‑TTTTTAATCCCGCGCAGTTTCGCGCCCAGTTTc       <  1:280688/140‑1 (MQ=255)
                                                                                                                               gcgGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCGAGGAGTACCATGAACG‑TTTTTAATCCCGCGCAGTTTCGCGCCCAGTTTc       <  1:1328292/140‑1 (MQ=255)
                                                                                                                               gcgGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCGAGGAGTACCATGAACG‑TTTTTAATCCCGCGCAGTTTCGCGCCCAGTTTc       >  2:537815/1‑140 (MQ=255)
                                                                                                                               gcgGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCGAGGAGTACCATGAACG‑TTTTTAATCCCGCGCAGTTTCGCGCCCAGTTTc       >  2:231841/1‑140 (MQ=255)
                                                                                                                               gcgGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCGAGGAGTACCATGAACG‑TTTTTAATCCCGCGCAGTTTCGCGCCCAGTTTc       >  2:1152034/1‑140 (MQ=255)
                                                                                                                                cgGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCGAGGAGTACCATGAACG‑TTTTTAATCCCGCGCAGTTTCGCGCCCAGTTTcc      >  2:280944/1‑140 (MQ=255)
                                                                                                                                cgGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCGAGGAGTACCATGAACG‑TTTTTAATCCCGCGCAGTTTCGCGCCCAGTTTcc      >  2:745615/1‑140 (MQ=255)
                                                                                                                                cgGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCGAGGAGTACCATGAACG‑TTTTTAATCCCGCGCAGTTTCGCGCCCAGTTTcc      >  2:1642683/1‑140 (MQ=255)
                                                                                                                                cgGCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCGAGGAGTACCATGAACG‑TTTTTAATCCCGCGCAGTTTCGCGCCCAGTTTcc      <  2:856738/140‑1 (MQ=255)
                                                                                                                                  gCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCGAGGAGTACCATGAACG‑TTTTTAATCCCGCGCAGTTTCGCGCCCAGTTTCTCg    <  2:1132866/140‑1 (MQ=255)
                                                                                                                                  gCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCGAGGAGTACCATGAACG‑TTTTTAATCCCGCGCAGTTTCGCGCCCAGTTTCCCg    <  1:1642683/140‑1 (MQ=255)
                                                                                                                                  gCTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCGAGGAGTACCATGAACG‑TTTTTAATCCCGCGCAGTTTCGCGCCCAGTTTCCCg    <  2:934198/140‑1 (MQ=255)
                                                                                                                                   cTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCGAGGAGTACCATGAACGTTTTTTAATCCCGCGCAGTTTCGCGCCCAGTTTCCCg    <  2:630619/140‑1 (MQ=255)
                                                                                                                                   cTTCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCGAGGAGTACCATGAACG‑TTTTTAATCCCGCGCAGTTTCGCGCCCAGTTTCCCGc   <  1:537815/140‑1 (MQ=255)
                                                                                                                                    ttCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCGAGGAGTACCATGAACG‑TTTTTAATCCCGCGCAGTTTCGCGCCCAGTTTCCCGCa  >  1:2001739/1‑140 (MQ=255)
                                                                                                                                    ttCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCGAGGAGTACCATGAACG‑TTTTTAATCCCGCGCAGTTTCGCGCCCAGTTTCCCGCa  >  1:692382/1‑140 (MQ=255)
                                                                                                                                    ttCGCAAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCGAGGAGTACCATGAACG‑TTTTTAATCCCGCGCAGTTTCGCGCCCAGTTTCCCGCa  >  2:1049588/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                       
CATACAGGCAGAAATAATTGCGGCAGTCTTTTTCATCATCTTCTCCTTAAAGCGATTAATAAATCTTAATAGTATTGATTAACAGGCTAAAATTAACGCCTAACACTATTCAGCATATGTTACTTACGCGGCTTCGCCAGGATATCCAGATAATTCTGATGGTTAGCACTCTCCTTGTATCAAAGTGAATTTTGCGTCACGATCGGTGCATCAAGCCGAGGAGTACCATGAACG‑TTTTTAATCCCGCGCAGTTTCGCGCCCAGTTTCCCGCA  >  NC_000913/2943110‑2943381

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A