Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A18 F48 I1 R1 70 76.3 2572620 98.7% 2539175 139.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,945,316 G→T P176Q (CCG→CAG)  tcdA ← tRNA threonylcarbamoyladenosine dehydratase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,945,3160GT100.0% 260.5 / NA 73P176Q (CCG→CAG) tcdAtRNA threonylcarbamoyladenosine dehydratase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (36/37);  total (36/37)

CACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGTTTTTCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCGGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCGTCGGATCAATCTGCCCACCCGCGCCACCGGTTGTGACCAGTGGGATTTTATTGCGCCGACAATAAGCAATCAGCGCCGCTTTGGGCCGTACACT  >  NC_000913/2945182‑2945452
                                                                                                                                      |                                                                                                                                        
cacacaCCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGTTTTTCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTcc                                                                                                                                     >  2:960339/1‑140 (MQ=255)
cacacaCCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGTTTTTCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTcc                                                                                                                                     >  2:385059/1‑140 (MQ=255)
    cacCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGTTTTTCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGaa                                                                                                                                 <  1:996926/140‑1 (MQ=255)
    cacCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGTTTTTCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGaa                                                                                                                                 <  2:794560/140‑1 (MQ=255)
     accgtaccgtCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGTTTTTCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAAt                                                                                                                                >  1:629974/1‑140 (MQ=255)
         taccgtCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGTTTTTCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGtt                                                                                                                            >  2:227303/1‑140 (MQ=255)
              tCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGTTTTTCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGc                                                                                                                       <  1:1154339/140‑1 (MQ=255)
              tCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGTTTTTCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGc                                                                                                                       >  2:188051/1‑140 (MQ=255)
               cTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGTTTTTCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGcc                                                                                                                      >  1:795140/1‑140 (MQ=255)
               cTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGTTTTTCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGcc                                                                                                                      >  2:358800/1‑140 (MQ=255)
                tGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGTTTTTCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCa                                                                                                                     <  2:952352/140‑1 (MQ=255)
                tGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGTTTTTCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCa                                                                                                                     <  2:406162/140‑1 (MQ=255)
                 gACTGCGGGTACAGCAGCGCGGCAGTAGAAAACAGGCAATCCACTCCGAGCTGACCTCTAGTGTTTATTACGATGCCAGAATGGCTGTGCAGGCGCTCGTGGAACTTCGCCTCCAGCTGGTCCTGAATCGTTTTCGCCAg                                                                                                                    >  2:1208797/1‑140 (MQ=255)
                 gACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGTTTTTCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCat                                                                                                                    >  2:914610/1‑139 (MQ=255)
                 gACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGTTTTTCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAg                                                                                                                    >  1:1076220/1‑140 (MQ=255)
                 gACTGCGGGTACACCAGCGCTTCAGTAGAAAACACACAATCCACGCCGAGCTTACCTTTACTGTTTTTCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAg                                                                                                                    >  1:558417/1‑140 (MQ=255)
                      cGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGTTTTTCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAGATCgg                                                                                                               <  1:535314/140‑1 (MQ=255)
                      cGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGTTTTTCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAGATCgg                                                                                                               <  1:852423/140‑1 (MQ=255)
                        ggTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGTTTTTCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTa                                                                                                             >  2:434274/1‑140 (MQ=255)
                        ggTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGTTTTTCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTa                                                                                                             >  1:664109/1‑140 (MQ=255)
                          tACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGTTTTTCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAAc                                                                                                           <  2:355808/140‑1 (MQ=255)
                          tACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGTTTTTCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCACCAGATCGGTAAc                                                                                                           <  2:375753/140‑1 (MQ=255)
                                aGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGTTTTTCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAAt                                                                                                     <  2:161215/140‑1 (MQ=255)
                                     ttCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGTTTTTCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCg                                                                                                <  1:303117/140‑1 (MQ=255)
                                     ttCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGTTTTTCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCg                                                                                                <  2:472464/140‑1 (MQ=255)
                                      tCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGTTTTTCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCGt                                                                                               >  1:368438/1‑140 (MQ=255)
                                         gTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGTTTTTCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCGTCgg                                                                                            <  1:149242/140‑1 (MQ=255)
                                          tAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGTTTTTCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCGTCGGa                                                                                           <  2:270350/140‑1 (MQ=255)
                                             aaaaCACGCAATCCACGCCGAGCTTACCTTTACTGTTTTTCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCGTCGGATCa                                                                                        >  2:864796/1‑140 (MQ=255)
                                             aaaaCACGCAATCCACGCCGAGCTTACCTTTACTGTTTTTCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCGTCGGATCa                                                                                        <  1:383729/140‑1 (MQ=255)
                                                    gCAATCCACGCCGAGCTTACCTTTACTGTTTTTCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCGTCGGATCAATCTGcc                                                                                 >  2:257045/1‑140 (MQ=255)
                                                    gCAATCCACGCCGAGCTTACCTTTACTGTTTTTCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCGTCGGATCAATCTGcc                                                                                 >  2:255215/1‑140 (MQ=255)
                                                       aTCCACGCCGAGCTTACCTTTACTGTTTTTCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCGTCGGATCAATCTGCCCAc                                                                              >  2:555336/1‑140 (MQ=255)
                                                            cGCCGAGCTTACCTTTACTGTTTTTCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCGACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCGTCGGATCAATCTGCCCACCcgcg                                                                         >  1:877382/1‑140 (MQ=255)
                                                            cGCCGAGCTTACCTTTACTGTTTTTCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCGTCGGATCAATCTGCCCACCcgcg                                                                         >  1:1166964/1‑140 (MQ=255)
                                                             gCCGAGCTTACCTTTACTGTTTTTCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCGTCGGATCAATCTGCCCACCCgcgc                                                                        >  2:992335/1‑140 (MQ=255)
                                                              ccGAGCTTACCTTTACTGTTTTTCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCGTCGGATCAATCTGCCCACCCGCGcc                                                                       <  1:662285/140‑1 (MQ=255)
                                                              ccGAGCTTACCTTTACTGTTTTTCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCGTCGGATCAATCTGCCCACCCGCGcc                                                                       >  1:256610/1‑140 (MQ=255)
                                                                gAGCTTACCTTTACTGTTTTTCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCGTCGGATCAATCTGCCCACCCGCGCCAc                                                                     <  1:914610/140‑1 (MQ=255)
                                                                gAGCTTACCTTTACTGTTTTTCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCGTCGGATCAATCTGCCCACCCGCGCCAc                                                                     <  1:434274/140‑1 (MQ=255)
                                                                gAGCTTACCTTTACTGTTTTTCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCGTCGGATCAATCTGCCCACCCGCGCCAc                                                                     <  1:188051/140‑1 (MQ=255)
                                                                  gCTTACCTTTACTGTTTTTCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCGTCGGATCAATCTGCCCACCCGCGCCACCg                                                                   >  2:1280160/1‑140 (MQ=255)
                                                                  gCTTACCTTTACTGTTTTTCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCGTCGGATCAATCTGCCCACCCGCGCCACCg                                                                   >  1:703520/1‑140 (MQ=255)
                                                                           tACTGTTTTTCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCGTCGGATCAATCTGCCCACCCGCGCCACCGGTTGTGAcc                                                          >  1:176137/1‑140 (MQ=255)
                                                                           tACTGTTTTTCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCGTCGGATCAATCTGCCCACCCGCGCCACCGGTTGTGAcc                                                          >  1:297806/1‑140 (MQ=255)
                                                                            aCTGTTTTTCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCGTCGGATCAATCTGCCCACCCGCGCCACCGGTTGTGACCa                                                         >  1:596650/1‑140 (MQ=255)
                                                                             cTGTTTTTCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCGTCGGATCAATCTGCCCACCCGCGCCACCGGTTGTGACCAg                                                        <  1:55137/140‑1 (MQ=255)
                                                                              tGTTTTTCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCGTCGGATCAATCTGCCCACCCGCGCCACCGGTTGTGACCAGt                                                       <  1:227303/140‑1 (MQ=255)
                                                                               gTTTTTCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCGTCGGATCAATCTGCCCACCCGCGCCACCGGTTGTGACCAGTg                                                      <  2:246335/140‑1 (MQ=255)
                                                                                tttttCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCGTCGGATCAATCTGCCCACCCGCGCCACCGGTTGTGACCAGTgg                                                     >  1:1286179/1‑140 (MQ=255)
                                                                                tttttCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCGTCGGATCAATCTGCCCACCCGCGCCACCGGTTGTGACCAGTgg                                                     >  1:996024/1‑140 (MQ=255)
                                                                                  tttCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCGTCGGATCAATCTGCCCACCCGCGCCACCGGTTGTGACCAGTGGGa                                                   >  1:460475/1‑140 (MQ=255)
                                                                                  tttCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCGTCGGATCAATCTGCCCACCCGCGCCACCGGTTGTGACCAGTGGGa                                                   >  2:955506/1‑140 (MQ=255)
                                                                                          cGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCGTCGGATCAATCTGCCCACCCGCGCCACCGGTTGTGACCAGTGGGATTTTATTg                                           >  2:758446/1‑140 (MQ=255)
                                                                                          cGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCGTCGGATCAATCTGCCCACCCGCGCCACCGGTTGTGACCAGTGGGATTTTATTg                                           >  1:90850/1‑140 (MQ=255)
                                                                                            ccAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCGTCGGATCAATCTGCCCACCCGCGCCACCGGTTGTGACCAGTGGGATTTTATTgcg                                         <  1:864796/140‑1 (MQ=255)
                                                                                            ccAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCGTCGGATCAATCTGCCCACCCGCGCCACCGGTTGTGACCAGTGGGATTTTATTgcg                                         <  1:876062/140‑1 (MQ=255)
                                                                                            ccAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCGTCGGATCAAACTGCCCACCCGCGCCACCGGTTGTGACCAGTGGGATTTTATTgcg                                         <  1:839480/140‑1 (MQ=255)
                                                                                             cAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCGTCGGATCAATCTGCCCACCCGCGCCACCGGTTGTGACCAGTGGGATTTTATTgcgc                                        <  2:297806/140‑1 (MQ=255)
                                                                                             cAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCGTCGGATCAATCTGCCCACCCGCGCCACCGGTTGTGACCAGTGGGATTTTATTgcgc                                        >  2:779305/1‑140 (MQ=255)
                                                                                             cAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCGTCGGATCAATCTGCCCACCCGCGCCACCGGTTGTGACCAGTGGGATTTTATTgcgc                                        <  2:664109/140‑1 (MQ=255)
                                                                                                aaTCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCGTCGGATCAATCTGCCCACCCGCGCCACCGGTTGTGACCAGTGGGATTTTATTGCGCCGa                                     >  1:482288/1‑140 (MQ=255)
                                                                                                 aTCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCGTCGGATCAATCTGCCCACCCGCGCCACCGGTTGTGACCAGTGGGATTTTATTGCGCCGAc                                    <  2:1286179/140‑1 (MQ=255)
                                                                                                           aGGCGCTCGCGCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCGTCGGATCAATCTGCCCACCCGCGCCACCGGTTGTGACCAGTGGGATTTTATTGCGCCGACAATAAGCAAt                          <  1:160924/140‑1 (MQ=255)
                                                                                                                  cgcgCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCGTCGGATCAATCTGCCCACCCGCGCCACCGGTTGTGACCAGTGGGATTTTATTGCGCCGACAATAAGCAATCAGcgcc                   >  2:987318/1‑140 (MQ=255)
                                                                                                                  cgcgCAACTTCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCGTCGGATCAATCTGCCCACCCGCGCCACCGGTTGTGACCAGTGGGATTTTATTGCGCCGACAATAAGCAATCAGcgcc                   >  1:813740/1‑140 (MQ=255)
                                                                                                                          ttCGCCGCCAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCGTCGGATCAATCTGCCCACCCGCGCCACCGGTTGTGACCAGTGGGATTTTATTGCGCCGACAATAAGCAATCAGCGCCGCTTTggg           <  2:629974/140‑1 (MQ=255)
                                                                                                                            cgccgcCAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCGTCGGATCAATCTGCCCACCCGCGCCACCGGTTGTGACCAGTGGGATTTTATTGCGCCGACAATAAGCAATCAGCGCCGCTTTGGGcc         <  2:795140/140‑1 (MQ=255)
                                                                                                                            cgccgcCAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCGTCGGATCAATCTGCCCACCCGCGCCACCGGTTGTGACCAGTGGGATTTTATTGCGCCGACAATAAGCAATCAGCGCCGCTTTGGGcc         <  1:955506/140‑1 (MQ=255)
                                                                                                                             gccgccAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCGTCGGATCAATCTGCCCACCCGCGCCACCGGTTGTGACCAGTGGGATTTTATTGCGCCGACAATAAGCAATCAGCGCCGCTTTGGGCCg        <  1:992335/140‑1 (MQ=255)
                                                                                                                               cgccAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCGTCGGATCAATCTGCCCACCCGCGCCACCGGTTGTGACCAGTGGGATTTTATTGCGCCGACAATAAGCAATCAGCGCCGCTTTGGGCCGTa      <  2:703520/140‑1 (MQ=255)
                                                                                                                               cgccAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCGTCGGATCAATCTGCCCACCCGCGCCACCGGTTGTGACCAGTGGGATTTTATTGCGCCGACAATAAGCAATCAGCGCCGCTTTGGGCCGTa      <  2:368438/140‑1 (MQ=255)
                                                                                                                                gccAGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCGTCGGATCAATCTGCCCACCCGCGCCACCGGTTGTGACCAGTGGGATTTTATTGCGCCGACAATAAGCAATCAGCGCCGCTTTGGGCCGTac     <  1:1208797/140‑1 (MQ=255)
                                                                                                                                   aGCTGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCGTCGGATCAATCTGCCCACCCGCGCCACCGGTTGTGACCAGTGGGATTTTATTGCGCCGACAATAAGCAATCAGCGCCGCTTTGGGCCGTACACt  <  1:80053/140‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                        
CACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGTTTTTCACTACGCCAAAATCGCTTTTCAGGCGCTCGCGCAACTTCGCCGCCAGCGGGTCCTGAATCGTTTTCGCCAGATCGGTAACCTGAATCTGCGTCGGATCAATCTGCCCACCCGCGCCACCGGTTGTGACCAGTGGGATTTTATTGCGCCGACAATAAGCAATCAGCGCCGCTTTGGGCCGTACACT  >  NC_000913/2945182‑2945452

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A