Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,986,816	G→T	G324C (GGT→TGT)	yqeG →	putative transporter YqeG

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,986,816	0	G	T	100.0%	503.9 / NA	145	G324C (GGT→TGT)	yqeG	putative transporter YqeG
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (73/72); total (73/72)

Only 100 of 146 total aligned reads displayed.

TGCCGAACGCCCCAGCATGGTTGTCAATTTCCGGGATTATTGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTGGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAATTATGTTGGTATCGCTGATTACCTTCATTGTTTGTTGCATTAACCCGAACGCGATTTCGATGATTTACGCGATCAGCGGCCCGCTCATTGCCATGA  >  NC_000913/2986679‑2986951

tgcCGAACGCCCCAGCATGGTTGTCAATTTCCGGGATTATTGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTgt                                                                                                                                       <  1:514583/140‑1 (MQ=255)

 gcCGAACGCCCCAGCATGGTTGTCAATTTCCGGGATTATTGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTtgtg                                                                                                                                      >  2:1524466/1‑140 (MQ=255)

  ccGAACGCCCCAGCATGGTTGTCAATTTCCGGGATTATTGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTgtgt                                                                                                                                     >  1:454703/1‑140 (MQ=255)

  ccGAACGCCCCAGCATGGTTGTCAATTTCCGGGATTATTGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTgtgt                                                                                                                                     >  1:1484651/1‑140 (MQ=255)

  ccGAACGCCCCAGCATGGTTGTCAATTTCCGGGATTATTGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTgtgt                                                                                                                                     >  2:604889/1‑140 (MQ=255)

  ccGAACGCCCCAGCATGGTTGTCAATTTCCGGGATTATTGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTgtgt                                                                                                                                     >  1:1227706/1‑140 (MQ=255)

   cGAACGCCCCAGCATGGTTGTCAATTTCCGGGATTATTGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTa                                                                                                                                    >  2:1143637/1‑140 (MQ=255)

        ggcccAGCATGGTTGTCAATTTCCGGGATTATTGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAGCAACACTACAGCAGGTTTGTGTAAAGaa                                                                                                                               <  2:1739497/138‑1 (MQ=255)

        gCCCCAGCATGGTTGTCAATTTCCGGGATTATTGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGaa                                                                                                                               <  2:1579573/140‑1 (MQ=255)

            cAGCATGGTTGTCAATTTCCGGGATTATTGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGt                                                                                                                           >  1:1004732/1‑140 (MQ=255)

             aGCATGGTTGTCAATTTCCGGGATTATTGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTc                                                                                                                          <  1:1143637/140‑1 (MQ=255)

                    ttGTCAATTTCCGGGATTATTGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCAtt                                                                                                                   >  2:717521/1‑140 (MQ=255)

                    ttGTCAATTTCCGGGATTATTGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCAtt                                                                                                                   >  1:267828/1‑140 (MQ=255)

                    ttGTCAATTTCCGGGATTATTGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCAtt                                                                                                                   >  2:1611265/1‑140 (MQ=255)

                    ttGTCAATTTCCGGGATTATTGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCAtt                                                                                                                   >  2:1054874/1‑140 (MQ=255)

                    ttGTCAATTTCCGGGATTATTGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCAtt                                                                                                                   >  1:1990592/1‑140 (MQ=255)

                    ttGTCAATTTCCGGGATTATTGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCAtt                                                                                                                   >  2:846671/1‑140 (MQ=255)

                    ttGTCAATTTCCGGGATTATTGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCAtt                                                                                                                   >  2:24421/1‑140 (MQ=255)

                       tCAATTTCCGGGATTATTGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTaa                                                                                                                <  1:1021868/140‑1 (MQ=255)

                       tCAATTTCCGGGATTATTGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTaa                                                                                                                >  1:2043755/1‑140 (MQ=255)

                          aTTTCCGGGATTATTGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACcg                                                                                                             <  2:1225045/140‑1 (MQ=255)

                           tttCCGGGATTATTGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACcgc                                                                                                            <  1:2105663/140‑1 (MQ=255)

                            ttCCGGGATTATTGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAGCcgcg                                                                                                           <  1:1447741/140‑1 (MQ=255)

                            ttCCGGGATTATTGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACcgcg                                                                                                           <  1:604889/140‑1 (MQ=255)

                            ttCCGGGATTATTGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACcgcg                                                                                                           <  2:381449/140‑1 (MQ=255)

                            ttCCGGGATTATTGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACcgcg                                                                                                           <  1:1611265/140‑1 (MQ=255)

                            ttCCGGGATTATTGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACcgcg                                                                                                           <  1:1594717/140‑1 (MQ=255)

                            ttCCGGGATTATTGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACcgcg                                                                                                           <  1:2140197/140‑1 (MQ=255)

                            ttCCGGGATTATTGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACcgcg                                                                                                           <  2:410470/140‑1 (MQ=255)

                            ttCCGGGATTATTGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACcgcg                                                                                                           <  1:30335/140‑1 (MQ=255)

                             tCCGGGATTATTGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACGCTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCgcgc                                                                                                          <  2:34204/140‑1 (MQ=255)

                             tCCGGGATTATTGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCgcgc                                                                                                          <  2:1004732/140‑1 (MQ=255)

                             tCCGGGATTATTGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCgcgc                                                                                                          >  2:1797291/1‑140 (MQ=255)

                             tCCGGGATTATTGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCgcgc                                                                                                          <  2:1990592/140‑1 (MQ=255)

                             tCCGGGATTATTGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCgcgc                                                                                                          <  1:2067506/140‑1 (MQ=255)

                             tCCGGGATTATTGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCgcgc                                                                                                          <  2:2110316/140‑1 (MQ=255)

                              ccGGGATTATTGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCa                                                                                                         >  1:1189656/1‑140 (MQ=255)

                              ccGGGATTATTGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCa                                                                                                         <  1:582741/140‑1 (MQ=255)

                               cGGGATTATTGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGGGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCAc                                                                                                        <  2:1769030/140‑1 (MQ=255)

                               cGGGATTATTGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCAc                                                                                                        <  1:387132/140‑1 (MQ=255)

                               cGGGATTATTGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCAc                                                                                                        <  1:919524/140‑1 (MQ=255)

                                gggATTATTGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACt                                                                                                       <  1:1524466/140‑1 (MQ=255)

                                 ggATTATTGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTa                                                                                                      <  2:1520651/140‑1 (MQ=255)

                                 ggATTATTGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATAGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTa                                                                                                      >  2:458629/1‑140 (MQ=255)

                                    ttattGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCa                                                                                                   <  2:1657682/140‑1 (MQ=255)

                                    ttattGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCa                                                                                                   <  2:331486/140‑1 (MQ=255)

                                     tattGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCaa                                                                                                  <  2:945105/140‑1 (MQ=255)

                                      attGTCGCAGTAGTTGCGATGTCGCAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTTCAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAAt                                                                                                 <  1:451292/140‑1 (MQ=255)

                                      attGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAAt                                                                                                 <  2:949408/140‑1 (MQ=255)

                                      attGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAAt                                                                                                 <  2:2043755/140‑1 (MQ=255)

                                      attGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAAt                                                                                                 <  2:454703/140‑1 (MQ=255)

                                      attGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAAt                                                                                                 <  1:1192066/140‑1 (MQ=255)

                                             cAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCATCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAATTATGTTg                                                                                          >  2:120227/1‑140 (MQ=255)

                                                tagtTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAATTATGTTGGTa                                                                                       <  1:1797291/140‑1 (MQ=255)

                                                tagtTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAATTATGTTGGTa                                                                                       <  1:375069/140‑1 (MQ=255)

                                                tagtTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAATTATGTTGGTa                                                                                       <  2:762463/140‑1 (MQ=255)

                                                  gtTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAATTATGTTGGTATc                                                                                     <  1:489013/140‑1 (MQ=255)

                                                       gATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAATTATGTTGGTATCGCTGa                                                                                >  2:136851/1‑140 (MQ=255)

                                                        aTGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAATTATGTTGGTATCGCTGAt                                                                               >  2:277119/1‑140 (MQ=255)

                                                          gTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAATTATGTTGGTATCGCTGATTa                                                                             >  2:1943243/1‑140 (MQ=255)

                                                          gTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAATTATGTTGGTATCGCTGATTa                                                                             >  1:1285484/1‑140 (MQ=255)

                                                          gTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAATTATGTTGGTATCGCTGATTa                                                                             <  1:717521/140‑1 (MQ=255)

                                                            cGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAATTATGTTGGTATCGCTGATTAcc                                                                           >  1:501608/1‑140 (MQ=255)

                                                             gAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAATTATGTTGGTATCGCTGATTACCt                                                                          <  2:267828/140‑1 (MQ=255)

                                                                  cATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAATTATGTTGGTATCGCTGATTACCTTCAtt                                                                     <  1:665131/140‑1 (MQ=255)

                                                                  cATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAATTATGTTGGTATCGCTGATTACCTTCAtt                                                                     <  1:1054874/140‑1 (MQ=255)

                                                                       cTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAATTATGTTGGTATCGCTGATTACCTTCAttgtttg                                                                <  1:846671/140‑1 (MQ=255)

                                                                       cTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAATTATGTTGGTATCGCTGATTACCTTCAttgtttg                                                                <  1:136851/140‑1 (MQ=255)

                                                                       cTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAATTATGTGGGTATCGCTGATTACCTTCAttgtttg                                                                <  2:832340/140‑1 (MQ=255)

                                                                         gggTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAATTATGTTGGTATCGCTGATTACCTTCATtgtttgtt                                                              >  1:303532/1‑140 (MQ=255)

                                                                         gggTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAATTATGTTGGTATCGCTGATTACCTTCATtgtttgtt                                                              <  2:1802055/140‑1 (MQ=255)

                                                                            tacgtacTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAATTATGTTGGTATCGCTGATTACCTTCATTGTTTGTTGCa                                                           >  2:1514621/1‑140 (MQ=255)

                                                                               gtacTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAATTATGTTGGTATCGCTGATTACCTTCAtt                                                                     >  2:1409018/1‑127 (MQ=255)

                                                                               gtacTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAATTATGTTGGTATCGCTGATTACCTTCAtt                                                                     <  1:1409018/127‑1 (MQ=255)

                                                                                         gTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAATTATGTTGGTATCGCTGATTACCTTCATTGTTTGTTGCATTAACCCGAAcgc                                              >  1:96015/1‑140 (MQ=255)

                                                                                          ttATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAATTATGTTGGTATCGCTGATTACCTTCATTGTTTGTTGCATTAACCCGAAcgcg                                             <  1:1000054/140‑1 (MQ=255)

                                                                                            aTTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAATTATGTTGGTATCGCTGATTACCTTCATTGTTTGTTGCATTAACCCGAACGCGAt                                           >  2:1317327/1‑140 (MQ=255)

                                                                                                     gCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAATTATGTTGGTATCGCTGATTACCTTCATTGTTTGTTGCATTAACCCGAACGCGATTTCgatgat                                  >  1:11052/1‑140 (MQ=255)

                                                                                                     gCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAATTATGTTGGTATCGCTGATTACCTTCATTGTTTGTTGCATTAACCCGAACGCGATTTCgatgat                                  >  2:1923332/1‑140 (MQ=255)

                                                                                                      ccACAGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAATTATGTTGGTATCGCTGATTACCTTCATTGTTTGTTGCATTAACCCGAACGCGATTTCGATGAtt                                 >  2:1129910/1‑140 (MQ=255)

                                                                                                       cacaGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAATTATGTTGGTATCGCTGATTACCTTCATTGTTTGTTGCATTAACCCGAACGCGATTTCGATGAttt                                >  1:1825056/1‑140 (MQ=255)

                                                                                                       cacaGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAATTATGTTGGTATCGCTGATTACCTTCATTGTTTGTTGCATTAACCCGAACGCGATTTCGATGAttt                                >  2:1958654/1‑140 (MQ=255)

                                                                                                       cacaGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAATTATGTTGGTATCGCTGATTACCTTCATTGTTTGTTGCATTAACCCGAACGCGATTTCGATGAttt                                >  2:1361851/1‑140 (MQ=255)

                                                                                                       cacaGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAATTATGTTGGTATCGCTGATTACCTTCATTGTTTGTTGCATTAACCCGAACGCGATTTCGATGAttt                                >  1:1663710/1‑140 (MQ=255)

                                                                                                       cacaGAGGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAATTATGTTGGTATCGCTGATTACCTTCATTGTTTGTTGCATTAACCCGAACGCGATTTCGATGAttt                                >  2:1445604/1‑140 (MQ=255)

                                                                                                           gagGTCGTCAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAATTATGTTGGTATCGCTGATTACCTTCATTGTTTGTTGCATTAACCCGAACGCGATTTCGATGATTTAcgc                            <  1:277119/140‑1 (MQ=255)

                                                                                                              gtcgtcAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAATTATGTTGGTATCGCTGATTACCTTCATTGTTTGTTGCATTAACCCGAACGCGATTTCGATGATTTACGCGAt                         >  2:1733198/1‑140 (MQ=255)

                                                                                                              gtcgtcAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAATTATGTTGGTATCGCTGATTACCTTCATTGTTTGTAGCATTAACCCGAACGCGATTTCGATGATTTACGCGAt                         >  1:2011173/1‑140 (MQ=255)

                                                                                                                cgtcAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAATTATGTTGGTATCGCTGATTACCTTCATTGTTTGTTGCATTAACCCGAACGCGATTTCGATGATTTACGCGATCa                       >  2:1287511/1‑140 (MQ=255)

                                                                                                                cgtcAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAATTATGTTGGTATCGCTGATTACCTTCATTGTTTGTTGCATTAACCCGAACGCGATTTCGATGATTTACGCGATCa                       <  2:1838553/140‑1 (MQ=255)

                                                                                                                cgtcAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAATTATGTTGGTATCGCTGATTACCTTCATTGTTTGTTGCATTAACCCGAACGCGATTTCGATGATTTACGCGATCa                       <  2:175763/140‑1 (MQ=255)

                                                                                                                cgtcAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAATTATGTTGGTATCGCTGATTACCTTCATTGTTTGTTGCATTAACCCGAACGCGATTTCGATGATTTACGCGATCa                       >  1:927155/1‑140 (MQ=255)

                                                                                                                cgtcAAAACAACACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAATTATGTTGGTATCGCTGATTACCTTCATTGTTTGTTGCATTAACCCGAACGCGATTTCGATGATTTACGCGATCa                       >  1:1156214/1‑140 (MQ=255)

                                                                                                                      aacaacACTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAATTATGTTGGTATCGCTGATTACCTTCATTGTTTGTTGCATTAACCCGAACGCGATTTCGATGATTTACGCGATCAGCGGcc                 <  2:599311/140‑1 (MQ=255)

                                                                                                                       acaacaCTACAGCAGGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAATTATGTTGGTATCGCTGATTACCTTCATTGTTTGTTGCATTAACCCGAACGCGATTTCGATGATTTACGCGATCAGCGGccc                <  1:1945868/140‑1 (MQ=255)

                                                                                                                                cagcagGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAATTATGTTGGTATCGCTGATTACCTTCATTGTTTGTTGCATTAACCCGAACGCGATTTCGATGATTTACGCGATCAGCGGCCCGCTCATTGc       >  2:381771/1‑140 (MQ=255)

                                                                                                                                cagcagGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAATTATGTTGGTATCGCTGATTACCTTCATTGTTTGTTGCATTAACCCGAACGCGATTTCGATGATTTACGCGATCAGCGGCCCGCTCATTGc       >  2:1171734/1‑140 (MQ=255)

                                                                                                                                   cagGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAATTATGTTGGTATCGCTGATTACCTTCATTGTTTGTTGCATTAACCCGAACGCGATTTCGATGATTTACGCGATCAGCGGCCCGCTCATTGCCAt    >  2:1601298/1‑140 (MQ=255)

                                                                                                                                    agGTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAATTATGTTGGTATCGCTGATTACCTTCATTGTTTGTTGCATTAACCCGAACGCGATTTCGATGATTTACGCGATCAGCGGCCCGCTCATTGCCATg   <  2:302244/140‑1 (MQ=255)

                                                                                                                                     ggTTTGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAATTATGTTGGTATCGCTGATTACCTTCATTGTTTGTTGCATTAACCCGAACGCGATTTCGATGATTTACGCGATCAGCGGCCCGCTCATTGCCATGa  >  1:1694450/1‑140 (MQ=255)

TGCCGAACGCCCCAGCATGGTTGTCAATTTCCGGGATTATTGTCGCAGTAGTTGCGATGTCGAAATCATTCCTGGGTACGTACTTTGGCGTTATTGAAGGTGCCACAGAGGTCGTCAAAACAACACTACAGCAGGTTGGTGTAAAGAAAAGTCGTGCATTTAACCGCGCACTATCAATTATGTTGGTATCGCTGATTACCTTCATTGTTTGTTGCATTAACCCGAACGCGATTTCGATGATTTACGCGATCAGCGGCCCGCTCATTGCCATGA  >  NC_000913/2986679‑2986951

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A