Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F48 I1 R1 508 125.6 4303852 99.2% 4269421 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,006,484 C→A R75S (CGC→AGC)  ygeW → putative carbamoyltransferase YgeW

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,006,4840CA98.8% 281.0 / ‑5.0 83R75S (CGC→AGC) ygeWputative carbamoyltransferase YgeW
Reads supporting (aligned to +/- strand):  ref base C (1/0);  new base A (53/29);  total (54/29)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

AACAGACGCCAGATGAACTGAAACAAGTACTGGACGTTGCCGCAGCATTAAAAGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCGCTCACGGCGAAACCGTGCGTGAAACCGCCAATATGATCTCCTTCTGCGCCGACG  >  NC_000913/3006347‑3006613
                                                                                                                                         |                                                                                                                                 
aaCAGACGCCAGATGAACTGAAACAAGTACTGGACGTTGCCGCAGCATTAAAAGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGc                                                                                                                                 >  1:268921/1‑140 (MQ=255)
aaCAGACGCCAGATGAACTGAAACAAGTACTGGACGTTGCCGCAGCATTAAAAGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGc                                                                                                                                 >  2:632206/1‑140 (MQ=255)
aaCAGACGCCAGATGAACTGAAACAAGTACTGGACGTTGCCGCAGCATTAAAAGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGc                                                                                                                                 <  1:752934/140‑1 (MQ=255)
aaCAGACGCCAGATGAACTGAAACAAGTACTGGACGTTGCCGCAGCATTAAAAGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGc                                                                                                                                 <  1:1375044/140‑1 (MQ=255)
 ataGACGCCAGATGAACTGAAACAAGTACTGGACGTTGCCGCAGCATTAAAAGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCt                                                                                                                                <  2:1145007/138‑1 (MQ=255)
     aCGCCAGATGAACTGAAACAAGTACTGGACGTTGCCGCAGCATTAAAAGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTtctc                                                                                                                            >  1:210278/1‑140 (MQ=255)
     aCGCCAGATGAACTGAAACAAGTACTGGACGTTGCCGCAGCATTAAAAGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTtctc                                                                                                                            >  1:641908/1‑140 (MQ=255)
     aCGCCAGATGAACTGAAACAAGTACTGGACGTTGCCGCAGCATTAAAAGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTtctc                                                                                                                            >  1:1960327/1‑140 (MQ=255)
       gCCAGATGAACTGAAACAAGTACTGGACGTTGCCGCAGCATTAAAAGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCtt                                                                                                                          >  1:129448/1‑140 (MQ=255)
              gAACTGAAACAAGTACTGGACGTTGCCGCAGCATTAAAAGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTc                                                                                                                   <  2:1220636/140‑1 (MQ=255)
              gAACTGAAACAAGTACTGGACGTTGCCGCAGCATTAAAAGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTc                                                                                                                   <  1:27953/140‑1 (MQ=255)
              gAACTGAAACAAGTACTGGACGTTGCCGCAGCATTAAAAGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTc                                                                                                                   <  2:1201287/140‑1 (MQ=255)
              gAACTGAAACAAGTACTGGACGTTGCCGCAGCATTAAAAGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTc                                                                                                                   <  2:1472340/140‑1 (MQ=255)
              gAACTGAAACAAGTACTGGACGTTGCCGCAGCATTAAAAGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTc                                                                                                                   <  2:270170/140‑1 (MQ=255)
              gAACTGAAACAAGTACTGGACGTTGCCGCAGCATTAAAAGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTc                                                                                                                   <  2:1893430/140‑1 (MQ=255)
                 cTGAAACAAGTACTGGACGTTGCCGCAGCATTAAAAGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCcgc                                                                                                                >  2:2095711/1‑140 (MQ=255)
                  tGAAACAAGTACTGGACGTTGCCGCAGCATTAAAAGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCcgcg                                                                                                               <  1:1755447/140‑1 (MQ=255)
                      aCAAGTACTGGACGTTGCCGCAGCATTAAAAGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTa                                                                                                           <  1:841094/140‑1 (MQ=255)
                        aaGTACTGGACGTTGCCGCAGCATTAAAAGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAAc                                                                                                         <  2:828472/140‑1 (MQ=255)
                           tACTGGACGTTGCCGCAGCATTAAAAGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTg                                                                                                      >  1:156211/1‑140 (MQ=255)
                             cTGGACGTTGCCGCAGCATTAAAAGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCt                                                                                                    <  1:1759492/140‑1 (MQ=255)
                             atGGACGTTGCCGCAGCATTAAAAGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCt                                                                                                    <  2:166848/139‑1 (MQ=255)
                              tGGACGTTGCCGCAGCATTAAAAGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTc                                                                                                   >  1:1408089/1‑140 (MQ=255)
                                gACGTTGCCGCAGCATTAAAAGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCgg                                                                                                 >  1:969112/1‑140 (MQ=255)
                                gACGTTGCCGCAGCATTAAAAGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCgg                                                                                                 <  1:1625985/140‑1 (MQ=255)
                                  cGTTGCCGCAGCATTAAAAGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGcc                                                                                               <  1:2044025/140‑1 (MQ=255)
                                  cGTTGCCGCAGCATTAAAAGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGcc                                                                                               <  2:1408089/140‑1 (MQ=255)
                                  agTTGCCGCAGCATTAAAAGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGcc                                                                                               <  2:1177366/139‑1 (MQ=255)
                                   gTTGCCGCAGCATTAAAAGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCt                                                                                              <  2:268921/140‑1 (MQ=255)
                                     tGCCGCAGCATTAAAAGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTg                                                                                            >  1:866091/1‑140 (MQ=255)
                                     tGCCGCAGCATTAAAAGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTg                                                                                            <  2:969112/140‑1 (MQ=255)
                                     tGCCGCAGCATTAAAAGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTg                                                                                            >  1:66362/1‑140 (MQ=255)
                                     tGCCGCAGCATTAAAAGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTg                                                                                            >  2:852649/1‑140 (MQ=255)
                                     tGCCGCAGCATTAAAAGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTg                                                                                            <  2:855261/140‑1 (MQ=255)
                                     tGCCGCAGCATTAAAAGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTg                                                                                            >  1:2150435/1‑140 (MQ=255)
                                     tGCCGCAACATTAAAAGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTg                                                                                            >  1:1014883/1‑140 (MQ=255)
                                      gCCGCAGCATTAAAAGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGc                                                                                           <  1:2095711/140‑1 (MQ=255)
                                       ccGCAGCATTAAAAGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGca                                                                                          >  1:1071381/1‑140 (MQ=255)
                                                       aCTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTcgact                                                                          >  2:411988/1‑139 (MQ=255)
                                                        cTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTagacga                                                                         >  2:1320728/1‑140 (MQ=255)
                                                         tGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGaa                                                                        >  1:492537/1‑140 (MQ=255)
                                                         tGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGaa                                                                        >  1:128842/1‑140 (MQ=255)
                                                           cGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAgt                                                                      >  2:326891/1‑139 (MQ=255)
                                                           cGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAgg                                                                      >  2:331335/1‑140 (MQ=255)
                                                           cGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAgg                                                                      >  1:1924073/1‑140 (MQ=255)
                                                           cGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAgc                                                                      >  1:593639/1‑139 (MQ=255)
                                                           cGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGGATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAgg                                                                      >  1:2149269/1‑140 (MQ=255)
                                                           cGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTAGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAgg                                                                      >  1:162778/1‑140 (MQ=255)
                                                            gTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGc                                                                     <  2:1134130/140‑1 (MQ=255)
                                                            gTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGc                                                                     >  2:1105430/1‑140 (MQ=255)
                                                                   aaaCATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATcac                                                              >  1:1796989/1‑140 (MQ=255)
                                                                         ctcAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATcc                                                        >  1:122536/1‑139 (MQ=255)
                                                                         ctcAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCg                                                        >  1:499910/1‑140 (MQ=255)
                                                                           cAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCGCt                                                      <  1:852649/140‑1 (MQ=255)
                                                                           cAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCGCt                                                      <  2:154692/140‑1 (MQ=255)
                                                                           aaaCCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCGCt                                                      <  2:1610047/139‑1 (MQ=255)
                                                                             aCCAAAGTCTTTAATAGTAGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCGCTCa                                                    <  2:162778/140‑1 (MQ=255)
                                                                              ccAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCGCTCAc                                                   >  1:819713/1‑140 (MQ=255)
                                                                                   gTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCGCTCACGGCGa                                              <  1:632206/140‑1 (MQ=255)
                                                                                      tttAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCGCTCACGGCGAAAc                                           >  1:946446/1‑140 (MQ=255)
                                                                                      tttAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCGCTCACGGCGAAAc                                           >  1:1292588/1‑140 (MQ=255)
                                                                                      tttAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCGCTCACGGCGAAAc                                           >  1:2079880/1‑140 (MQ=255)
                                                                                      tttAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCGCTCACGGCGAAAc                                           >  1:373888/1‑140 (MQ=255)
                                                                                              tGGATTAGGTATTTCCGTATTCCGTGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGAGCTTAACCTGCTCGGCCTTGCACAACAACATCTCGACGAAGGCAAATCACAAATCGCTCACGGCGAAACcctacgta                                   >  2:1979144/1‑139 (MQ=255)
                                                                                              tGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCGCTCACGGCGAAACcgtgcgtg                                   >  2:1350623/1‑140 (MQ=255)
                                                                                              tGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCGCTCACGGCGAAACcgtgcgtg                                   >  1:845491/1‑140 (MQ=255)
                                                                                              tGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCGCTCACGGCGAAACcgtgcgtg                                   >  1:1586405/1‑140 (MQ=255)
                                                                                                  ttAGGTTTTTCCGTATCCCGCGACAACCCCCCCCGTACCAGCTTCTTTTTTGCTCCCGCGCTAACCCTGCCCGGCCTTGCACAAAAAGATCCCGACGAAGCCAAATCAAAAATCGCTCACGGCGAAACCGTGCGTAAAAc                               <  2:128842/140‑1 (MQ=255)
                                                                                                    agttATTCCTGTATTCCGCGACAACCCCCCCCGTACCAGCTTCTCTTATGCTCCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGAAAATCACAAATCGCTCGCGGCAAACCCGTGCGTGAAACCg                             <  2:593639/137‑1 (MQ=255)
                                                                                                      gTATTCCCGTATCCCGCGACACCCCCCCCCGTACCAGCTTCTCTTATGCTCCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGCCAAATCACAAATCGCTCACGGCAAAACCGTGCGTGAAACCGcc                           <  2:535068/140‑1 (MQ=255)
                                                                                                       tATTCCCGTATCCCGCGACACCTCCCCCCGTACCAGCTTCTCTTATGCTCCCGCGCTAAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGAAAATCACAAATCGCTCACGGCAAACCCGTGCGTAAAACCGCCa                          <  2:59060/140‑1 (MQ=255)
                                                                                                         tttCCGTATTCCGCGACAACCCCCCCCGTCCCAGCTTCTCTTATGCTTCCGCGCTTACCCTGCTCGGCCTTGCACAACAGGATCTCGACGAAGCCAAATCACAAATCGCTCCCGGCGAACCCGTGCGTGAAACCGCCAat                        <  2:2079880/140‑1 (MQ=255)
                                                                                                          ttcattATCCCGCGACAACCCCCCCCGTACCAGCTTCTTTTATGCTTCCGGCCTTAACTTGCTCGCCTTTGCAAAAAAAGATCTAGACGAAGGCAAATCACAAATCTCTCACGGCGAAACCGGGCGTGAAACCGCCAata                       <  2:1014883/135‑1 (MQ=255)
                                                                                                          ttCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCGCTCACGGCGAAACCGTGCGTGAAACCGCCAata                       >  1:1982877/1‑140 (MQ=255)
                                                                                                          ttCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCGCTCACGGCGAAACCGTGCGTGAAACCGCCAata                       >  1:1346638/1‑140 (MQ=255)
                                                                                                          ttCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCGCTCACGGCGAAACCGTGCGTGAAACCGCCAata                       >  1:1867935/1‑140 (MQ=255)
                                                                                                           tCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCGCTCACGGCGAAACCGTGCGTGAAACCGCCAatat                      >  1:2085485/1‑140 (MQ=255)
                                                                                                           tCCGTATTCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCGCTCACGGCGAAACCGTGCGTGAAACCGCCAatat                      >  1:1307506/1‑140 (MQ=255)
                                                                                                                 ttCCGCGACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTTCTCGTCCTTGCACAACAAGTTCTTGACGAAGCCAAATCACAAATGGCTAACGGCGAATTCGTGCGTGAAATCGCCAATATgttttc                >  2:1373381/1‑135 (MQ=255)
                                                                                                                    cgcgACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCGCTCACGGCGAAACCGTGCGTGAAACCGCCAATATGATCTCCtt             >  2:1186595/1‑140 (MQ=255)
                                                                                                                    cgcgACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCGCTCACGGCGAAACCGTGCGTGAAACCGCCAATATGATCTCCtt             >  2:428745/1‑140 (MQ=255)
                                                                                                                    cgcgACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCGCTCACGGCGAAACCGTGCGTGAAACCGCCAATATGATCTCCtt             >  1:1602003/1‑140 (MQ=255)
                                                                                                                      cgACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCGCTCACGGCGAAACCGTGCGTGAAACCGCCAATATGTTCTCCTTCt           >  1:1732372/1‑140 (MQ=255)
                                                                                                                      cgACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCGCTCACGGCGAAACCGTGCGTGAAACCGCCAATATGATCTCCTTCt           >  1:263244/1‑140 (MQ=255)
                                                                                                                      cgACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCGCTCACGGCGAAACCGTGCGTGAAACCGCCAATATGATCTCCTTCt           >  1:1718732/1‑140 (MQ=255)
                                                                                                                      cgACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCGCTCACGGCGAAACCGTGCGTGAAACCGCCAATATGATCTCCTTCt           >  1:443906/1‑140 (MQ=255)
                                                                                                                      cgACAACTCCACCCGTACCAGCTTCTCTTATGCTTCCGCACTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCGCTCACGGCGAAACCGTGCATGAAACCGCCAATATGATCTCCTTCt           >  1:1623806/1‑140 (MQ=255)
                                                                                                                            cTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCGCTCACGGCGAAACCGTGCGTGAAACCGCCAATATGATCTCCTTCTGCGCCg     >  1:2106146/1‑140 (MQ=255)
                                                                                                                            cTCCACCCGTACCAGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCGCTCACGGCGAAACCGTGCGTGAAACCGCCAATATGATCTCCTTCTGCGCCg     >  1:1008746/1‑140 (MQ=255)
                                                                                                                             cccccccGTCCCAGCTTCTCTTATGCTCCCGCGCTTACCCTGCTCGGCCTTCCAAAAAAAGATCTCGACGAAGACAAAACACAAATCGCCCACGGCAAACCCGTGCGTAAAACCGCCAATATGATCTCCTTCTGCGCCGa    <  2:1030795/136‑1 (MQ=255)
                                                                                                                             cccccccGTACCAGCTTCTCTTATGCTTCCGCGCTTACCCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAACCAAAAATCGCTCACGGCAAACCCGTGCGTGAAACCGCCAATATGATCTCCTTCTGCGCCGa    <  1:1350623/136‑1 (MQ=255)
                                                                                                                             cccccccGCACCAGCTTCTCTTATGCTCCCGCGTTAAACCTGCCCGCCTTTGCAAAAAAAGATCTCGACAAAGGAAAATCAAAAACCGCCCACGGAGAACCCGGGCGTAAAACCGCCAATATGATCTCCTTCTGCGCCGa    <  2:1071381/136‑1 (MQ=255)
                                                                                                                               cccccGTCCCAGCTTCTCTTATGCTCCCGCGCTTAACCTCCCCGGCCTTGCAAAACAAGATCTCAACAAAGCCAAATCAAAAACCGCCCGCGGCAAACCCGTGCGTAAAACCGCCAATATGATCTCCTTCTGCGCCGACg  <  2:1960327/138‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                 
AACAGACGCCAGATGAACTGAAACAAGTACTGGACGTTGCCGCAGCATTAAAAGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCGCTCACGGCGAAACCGTGCGTGAAACCGCCAATATGATCTCCTTCTGCGCCGACG  >  NC_000913/3006347‑3006613

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A