Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F48 I1 R1 508 125.6 4303852 99.2% 4269421 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,012,347 C→A A296E (GCG→GAG)  yqeA → putative amino acid kinase YqeA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,012,3470CA100.0% 331.7 / NA 97A296E (GCG→GAG) yqeAputative amino acid kinase YqeA
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (49/48);  total (49/48)

AAGTGATGCTGAACGCTTTATCGAAGAAGGTCATTTTGCGAAAGGTTCTATGCTGCCTAAAGTGGAAGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGCGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCGGGTGGGTAATACCATCCGGCCAAAGATTGTCAAGTAAGTGCGCTTTGTTGATGCCGGATGCGGCGCGAGCGCCTTATC  >  NC_000913/3012216‑3012482
                                                                                                                                   |                                                                                                                                       
aaGTGATGCTGAACGCTTTATCGAAGAAGGTCATTTTGCGAAAGGTTCTATGCTGCCTAAAGTGGAAGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAaagaag                                                                                                                                 <  2:688490/140‑1 (MQ=255)
     aTGCTGAACGCTTTATCGCTGAAGGTCATTTTGCGAAAGGTTCTATGCTGCCTAAAGTGGAAGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGAtt                                                                                                                            >  2:2086007/1‑140 (MQ=255)
     aTGCTGAACGCTTTATCGAAGAAGGTCATTTTGCGAAAGGTTCTATGCTGCCTAAAGTGGAAGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGAtt                                                                                                                            >  2:645264/1‑140 (MQ=255)
     aTGCTGAACGCTTTATCGAAGAAGGTCATTTTGCGAAAGGTTCTATGCTGCCTAAAGTGGAAGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGAtt                                                                                                                            <  1:1132845/140‑1 (MQ=255)
     aTGCTGAACGCTTTATCGAAGAAGGTCATTTTGCGAAAGGTTCTATGCTGCCTAAAGTGGAAGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGAtt                                                                                                                            >  2:1065633/1‑140 (MQ=255)
      tGCTGAACGCTTTATCGAAGAAGGTCATTTTGCGAAAGGTTCTATGCTGCCTAAAGTGGAAGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTg                                                                                                                           >  1:1009412/1‑140 (MQ=255)
       gCTGAACGCTTTATCGAAGAAGGTCATTTTGCGAAAGGTTCTATGCTGCCTAAAGTGGAAGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCTTATTGAGCAAAGAGAAAGAAGGGATTGa                                                                                                                          >  2:2034518/1‑140 (MQ=255)
       gCTGAACGCTTTATCGAAGAAGGTCATTTTGCGAAAGGTTCTATGCTGCCTAAAGTGGAAGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGa                                                                                                                          <  1:935396/140‑1 (MQ=255)
       gCTGAACGCTTTATCGAAGAAGGTCATTTTGCGAAAGGTTCTATGCTGCCTAAAGTGGAAGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGa                                                                                                                          >  1:908622/1‑140 (MQ=255)
           aaCGCTTTATCGAAGAAGGTCATTTTGCGAAAGGTTCTATGCTGCCTAAAGTGGAAGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGc                                                                                                                      >  1:1452606/1‑140 (MQ=255)
           aaCGCTTTATCGAAGAAGGTCATTTTGCGAAAGGTTCTATGCTGCCTAAAGTGGAAGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGc                                                                                                                      >  1:87026/1‑140 (MQ=255)
            aCGCTTTATCGAAGAAGGTCATTTTGCGAAAGGTTCTATGCTGCCTAAAGTGGAAGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCa                                                                                                                     <  1:316156/140‑1 (MQ=255)
             cGCTTTATCGAAGAAGGTCATTTTGCGAAAGGTTCTATGCTGCCTAAAGTGGAAGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCaa                                                                                                                    <  2:1594397/140‑1 (MQ=255)
               cTTTATCGAAGAAGGTCATTTTGCGAAAGGTTCTATGCTGCCTAAAGTGGAAGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCaaaa                                                                                                                  <  2:510898/140‑1 (MQ=255)
                tttATCGAAGAAGGTCATTTTGCGAAAGGTTCTATGCTGCCTAAAGTGGAAGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAAc                                                                                                                 >  2:856661/1‑140 (MQ=255)
                 ttATCGAAGAAGGTCATTTTGCGAAAGGTTCTATGCTGCCTAAAGTGGAAGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACa                                                                                                                <  1:313644/140‑1 (MQ=255)
                  tATCGAAGAAGGTCATTTTGCGAAAGGTTCTATGCTGCCTAAAGTGGAAGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAg                                                                                                               >  1:1753433/1‑140 (MQ=255)
                    tCGAAGAAGGTCATTTTGCGAAAGGTTCTATGCTGCCTAAAGTGGAAGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGa                                                                                                             <  1:1942493/140‑1 (MQ=255)
                    acGAAGAAGGTCATTTTGCGAAAGGTTCTATGCTGCCTAAAGTGGAAGCTGCCGCCTCGTTTGCTTGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGa                                                                                                             <  2:1748593/139‑1 (MQ=255)
                      gaagaaGGTCATTTTGCGAAAGGTTCTATGCTGCCTAAAGTGGAAGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAAc                                                                                                           <  2:1009412/140‑1 (MQ=255)
                      gaagaaGGTCATTTTGCGAAAGGTTCTATGCTGCCTAAAGTGGAAGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAAc                                                                                                           <  1:1860395/140‑1 (MQ=255)
                      gaagaaGGTCATTTTGCGAAAGGTTCTATGCTGCATAAAGTGGAAGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAAc                                                                                                           <  2:1522911/140‑1 (MQ=255)
                       aagaagGTCATTTTGCGAAAGGTTCTATGCTGCCTAAAGTGGAAGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACg                                                                                                          >  1:256055/1‑140 (MQ=255)
                       aagaagGTCATTTTGCGAAAGGTTCTAAGCTGCCTAAAGAGGAAGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACg                                                                                                          >  2:180512/1‑140 (MQ=255)
                         gaagGTCATTTTGCGAAAGGTTCTATGCTGCCTAAAGTGGAAGCTGACGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGt                                                                                                        <  1:1986879/140‑1 (MQ=255)
                          aagGTCATTTTGCGAAAGGTTCTATGCTGCCTAAAGTGGAAGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGtt                                                                                                       >  2:571816/1‑139 (MQ=255)
                          aagGTCATTTTGCGAAAGGTTCTATGCTGCCTAAAGTGGAAGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTg                                                                                                       >  2:1879240/1‑140 (MQ=255)
                            ggTCATTTTGCGAAAGGTTCTATGCTGCCTAAAGTGGAAGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGAt                                                                                                     >  1:882024/1‑140 (MQ=255)
                            ggTCATTTTGCGAAAGGTTCTATGCTGCCTAAAGTGGAAGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGAt                                                                                                     <  2:5690/140‑1 (MQ=255)
                             gTCATTTTGCGAAAGGTTCTATGCTGCCTAAAGTGGAAGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGAtt                                                                                                    <  2:87026/140‑1 (MQ=255)
                              tCATTTTGCGAAAGGTTCTATGCTGCCTAAAGTGGAAGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGAttt                                                                                                   >  1:1669374/1‑140 (MQ=255)
                                aTTTTGCGAAAGGTTCTATGCTGCCTAAAGTGGAAGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGt                                                                                                 <  2:225176/140‑1 (MQ=255)
                                aTTTTGCGAAAGGTTCTATGATGCCTAAAGTGGAAGCTGACGCATCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTAGCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGt                                                                                                 <  2:908622/140‑1 (MQ=255)
                                  tttGCGAAAGGTTCTATGCTGCCTAAAGTGGAAGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCa                                                                                               <  2:256055/140‑1 (MQ=255)
                                    tGCGAAAGGTTCTATGCTGCCTAAAGTGGAAGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGt                                                                                             <  1:1703292/140‑1 (MQ=255)
                                    tGCGAAAGGTTCTATGCTGCCTAAAGTGGAAGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGt                                                                                             <  1:1073191/140‑1 (MQ=255)
                                              tCTATGCTGCCTAAAGTGGAAGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAgg                                                                                   <  2:1452606/140‑1 (MQ=255)
                                                taagctgcCTAAAGTGGAAGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGcc                                                                                 <  1:180512/137‑1 (MQ=255)
                                                  tgctgcCTAAAGTGGAAGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCgg                                                                               <  2:1245214/140‑1 (MQ=255)
                                                  tgctgcCTAAAGTGGAAGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCgg                                                                               <  2:381766/140‑1 (MQ=255)
                                                  tgctgcCTAAAGTGGAAGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCgg                                                                               <  1:681321/140‑1 (MQ=255)
                                                  tgctgcCTAAAGTGGAAGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCgg                                                                               <  1:645264/140‑1 (MQ=255)
                                                  tgctgcCTAAAGTGGAAGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCgg                                                                               <  1:1879240/140‑1 (MQ=255)
                                                  tgctgcCTAAAGTGGAAGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCgg                                                                               <  2:882024/140‑1 (MQ=255)
                                                   gctgcCTAAAGTGGAAGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCggg                                                                              <  2:734101/140‑1 (MQ=255)
                                                   gctgcCTAAAGTGGAAGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCggg                                                                              <  2:758816/140‑1 (MQ=255)
                                                      gcCTAAAGTGGAAGCTGCCGCCTCGTTTGCTGGCTCTCGCGGAGTGCGTGATGCTCTGATTACGGTATTTAGCAAAGAAAACAGAGGGATTGAAGGCAAAACAGGAACGGGGATTTTTCAGTAATTTAAAGGCCgggtgg                                                                           >  2:1429872/1‑140 (MQ=255)
                                                      gcCTAAAGTGGAAGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCgggtgg                                                                           <  1:1065633/140‑1 (MQ=255)
                                                       ccTAAAGTGGAAGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCgggtggg                                                                          >  2:1756157/1‑140 (MQ=255)
                                                       ccTAAAGTGGAAGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCgggtggg                                                                          >  1:2048062/1‑140 (MQ=255)
                                                       ccTAAAGTGGAAGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCggg                                                                              <  1:985351/136‑1 (MQ=255)
                                                       ccTAAAGTGGAAGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCggg                                                                              >  2:985351/1‑136 (MQ=255)
                                                                gAAGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCGGGTGGGTAATACCAt                                                                 >  2:422615/1‑140 (MQ=255)
                                                                 aaGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCGGGTGGGTAATACCATc                                                                >  1:2028498/1‑140 (MQ=255)
                                                                 aaGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCGGGTGGGTAATACCATc                                                                >  2:1119719/1‑140 (MQ=255)
                                                                 aaGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCGGGTGGGTAATACCATc                                                                <  2:1753433/140‑1 (MQ=255)
                                                                     tGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCGGGTGGGTAATACCATCCGGc                                                            >  1:715033/1‑140 (MQ=255)
                                                                     tGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCAATGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCGGGTGGGTAATACCATCCgga                                                            >  2:1665082/1‑139 (MQ=255)
                                                                       ccgccTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCGGGTGGGTAATACCATCCGGCCa                                                          >  2:320482/1‑140 (MQ=255)
                                                                       ccgccTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCGGGTGGGTAATACCATCCGGCCa                                                          >  1:714216/1‑140 (MQ=255)
                                                                        cgccTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCGGGTGGGTAATACCATCCGGCCaa                                                         <  1:2099623/140‑1 (MQ=255)
                                                                              gTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCGGGTGGGTAATACCATCCGGCCAAAGATTg                                                   <  1:1934333/140‑1 (MQ=255)
                                                                                    tcgctcTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCGGGTGGGTAATACCATCCGGCCAAAGATTGTCaagt                                             >  1:1495224/1‑140 (MQ=255)
                                                                                        tctcGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCGGGTGGGTAATACCATCCGGCCAAAGATTGTCaagtaagt                                         <  1:856661/140‑1 (MQ=255)
                                                                                        tctcGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCGGGTGGGTAATACCATCCGGCCAAAGATTGTCaagtaagt                                         >  2:1910133/1‑140 (MQ=255)
                                                                                            gcgcAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCGGGTGGGTAATACCATCCGGCCAAAGATTGTCAAGTAAGTgcgc                                     <  1:1756157/140‑1 (MQ=255)
                                                                                             cgcAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCGGGTGGGTAATACCATCCGGCCAAAGATTGTCAAGTAAGTGCGCt                                    <  1:1507339/140‑1 (MQ=255)
                                                                                              gcAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCGGGTGGGTAATACCATCCGGCCAAAGATTGTCAAGTAAGTGCGCtt                                   <  1:422615/140‑1 (MQ=255)
                                                                                                  gTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCGGGTGGGTAATACCATCCGGCCAAAGATTGTCAAGTAAGTGCGCTttgtt                               >  1:674730/1‑140 (MQ=255)
                                                                                                  gTCGTGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCGGGTGGGTAATACCATCCGGCCAAAGATTGTCAAGTAAGTGCGCTttgtt                               >  1:329493/1‑140 (MQ=255)
                                                                                                      tGAAGCACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCGGGTGGGTAATACCATCCGGCCAAAGATTGTCAAGTAAGTGCGCTTTGTTGATg                           >  2:917548/1‑140 (MQ=255)
                                                                                                           cACTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCGGGTGGGTAATACCATCCGGCCAAAGATTGTCAAGTAAGTGCGCTTTGTTGATGCCGGa                      <  2:2028498/140‑1 (MQ=255)
                                                                                                            aCTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCGGGTGGGTAATACCATCCGGCCAAAGATTGTCAAGTAAGTGCGCTTTGTTGATGCCGGAt                     >  1:1117620/1‑140 (MQ=255)
                                                                                                            aCTGATTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCGGGTGGGTAATACCATCCGGCCAAAGATTGTCAAGTAAGTGCGCTTTGTTGATGCCGGAt                     >  1:864561/1‑140 (MQ=255)
                                                                                                             cTGATTACCGTATTGAGCAAAGAGAAAGTAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCGGGTGGGTAATACCATCCGGCCAAAGATTGTCAAGTAAGTGCGCTTTGTTGATGCCGGATg                    >  1:1058809/1‑140 (MQ=255)
                                                                                                                aTTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCGGGTGGGTAATACCATCCGGCCAAAGATTGTCAAGTAAGTGCGCTTTGTTGATGCCGGATgcgg                 >  2:89942/1‑140 (MQ=255)
                                                                                                                aTTACCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCGGGTGGGTAATACCATCCGGCCAAAGATTGTCAAGTAAGTGCGCTTTGTTGATGCCGGATgcgg                 >  2:1081301/1‑140 (MQ=255)
                                                                                                                   aCCGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCGGGTGGGTAATACCATCCGGCCAAAGATTGTCAAGTAAGTGCGCTTTGTTGATGCCGGATGCGgcgc              >  2:735220/1‑140 (MQ=255)
                                                                                                                    ccGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCGGGTGGGTAATACCATCCGGCCAAAGATTGTCAAGTAAGTGCGCTTTGTTGATGCCGGATGCGGcgcg             <  1:571816/140‑1 (MQ=255)
                                                                                                                    acGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCGGGTGGGTAATACCATCCGGCCAAAGATTGTCAAGTAAGTGCGCTTTGTTGATGCCGGATGCGGcgcg             <  2:945072/139‑1 (MQ=255)
                                                                                                                    acGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCGGGTGGGTAATACCATCCGGCCAAAGATTGTCAAGTAAGTGCGCTTTGTTGATGCCGGATGCGGcgcg             <  2:106870/139‑1 (MQ=255)
                                                                                                                     cGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCGGGTGGGTAATACCATCCGGCCAAAGATTGTCAAGTAAGTGCGCTTTGTTGATGCCGGATGCGGCGCGa            <  2:714216/140‑1 (MQ=255)
                                                                                                                     cGTATTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCGGGTGGGTAATACCATCCGGCCAAAGATTGTCAAGTAAGTGCGCTTTGTTGATGCCGGATGCGGCGCGa            <  2:2048062/140‑1 (MQ=255)
                                                                                                                        aTTGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCGGGTGGGTAATACCATCCGGCCAAAGATTGTCAAGTAAGTGCGCTTTGTTGATGCCGGATGCGGCGCGAgcg         <  2:674730/140‑1 (MQ=255)
                                                                                                                         ttGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCGGGTGGGTAATACCATCCGGCCAAAGATTGTCAAGTAAGTGCGCTTTGTTGATGCCGGATGCGGCGCGAgcgc        >  2:1807071/1‑140 (MQ=255)
                                                                                                                          tGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCGGGTGGGTAATACCATCCGGCCAAAGATTGTCAAGTAAGTGCGCTTTGTTGATGCCGGGTGCGGCGCGAGCGcc       >  1:2066805/1‑140 (MQ=255)
                                                                                                                          tGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCGGGTGGGTAATACCATCCGGCCAAAGATTGTCAAGTAAGTGCGCTTTGTTGATGCCGGATGCGGCGCGAGCGcc       >  1:1940300/1‑140 (MQ=255)
                                                                                                                          tGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCGGGTGGGTAATACCATCCGGCCAAAGATTGTCAAGTAAGTGCGCTTTGTTGATGCCGGATGCGGCGCGAGCGcc       >  1:1583462/1‑140 (MQ=255)
                                                                                                                          tGAGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCGGGTGGGTAATACCATCCGGCCAAAGATTGTCAAGTAAGTGCGCTTTGTTGATGCCGGATGCGGCGCGAGCGcc       >  2:1553964/1‑140 (MQ=255)
                                                                                                                            agtaaaGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCGGGTGGGTAATACCATCCGGCCAAAGATTGTCAAGTAAGTGCGCTTTGTTGATGCCGGATGCGGCGCGAGCGCCtt     >  2:953531/4‑140 (MQ=255)
                                                                                                                            aGCAAAGAGAAAGAAGGGGTTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCGGGTGGGTAATACCATCCGGCCAAAGATTGTCAAGTAAGTGCGCTTTGTTGATGCCGTATGCGGCGCGAGCTCCtt     >  1:2129481/1‑140 (MQ=255)
                                                                                                                            aGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCGGGTGGGTAATACCATCCGGCCAAAGATTGTCAAGTAAGTGCGCTTTGTTGATGCCGGATGCGGCGCGAGCGCCtt     >  1:968461/1‑140 (MQ=255)
                                                                                                                            aGCAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCGGGTGGGTAATACCATCCGGCCAAAGATTGTCAAGTAAGTGCGCTTTGTTGATGCCGGATGCGGCGCGAGCGCCtt     >  1:583897/1‑140 (MQ=255)
                                                                                                                              cAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCGGGTGGGTAATACCATCCGGCCAAAGATTGTCAAGTAAGTGCGCTTTGTTGATGCCGGATGCGGCGCGAGCGCCTTAt   >  1:1293165/1‑140 (MQ=255)
                                                                                                                              cAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCGGGTGGGTAATACCATCCGGCCAAAGATTGTCAAGTAAGTGCGCTTTGTTGATGCCGGATGCGGCGCGAGCGCCTTAt   >  1:47996/1‑140 (MQ=255)
                                                                                                                              cAAAGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCGGGTGGGTAATACCATCCGGCCAAAGATTGTCAAGTAAGTGCGCTTTGTTGATGCCGGATGCGGCGCGAGCGCCTTAt   <  1:423419/140‑1 (MQ=255)
                                                                                                                               aaaGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCGGGTGGGTAATACCATCCGGCCAAAGATTGTCAAGTAAGTGCGCTTTGTTGATGCCGGATGCGGCGCGa            >  1:1360610/1‑130 (MQ=255)
                                                                                                                               aaaGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCGGGTGGGTAATACCATCCGGCCAAAGATTGTCAAGTAAGTGCGCTTTGTTGATGCCGGATGCGGCGCGa            <  2:1360610/130‑1 (MQ=255)
                                                                                                                               aaaGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCGGGTGGGTAATACCATCCGGCCAAAGATTGTCAAGTAAGTGCGCTTTGTTGATGCCGGATGCGGCGCGAGCGCCTTATc  <  2:715033/140‑1 (MQ=255)
                                                                                                                               aaaGAGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCGGGTGGGTAATACCATCCGGCCAAAGATTGTCAAGTAAGTGCGCTTTGTTGATGCCGGATGCGGCGCGAGCGCCTTATc  >  1:269781/1‑140 (MQ=255)
                                                                                                                                   |                                                                                                                                       
AAGTGATGCTGAACGCTTTATCGAAGAAGGTCATTTTGCGAAAGGTTCTATGCTGCCTAAAGTGGAAGCTGCCGCCTCGTTTGCTCGCTCTCGCGCAGGTCGTGAAGCACTGATTACCGTATTGAGCAAAGCGAAAGAAGGGATTGAAGGCAAAACAGGAACGGTGATTTGTCAGTAATTTAAAGGCCGGGTGGGTAATACCATCCGGCCAAAGATTGTCAAGTAAGTGCGCTTTGTTGATGCCGGATGCGGCGCGAGCGCCTTATC  >  NC_000913/3012216‑3012482

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A