Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,043,887	G→T	D76Y (GAC→TAC)	bglA →	6‑phospho‑beta‑glucosidase A

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,043,887	0	G	T	100.0%	325.0 / NA	93	D76Y (GAC→TAC)	bglA	6‑phospho‑beta‑glucosidase A
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (53/40); total (53/40)

GGAAAAGGGCCGAGCATTTGTGACGTTCTGACCGGTGGCGCACACGGCGTGCCGCGCGAAATCACCAAAGAAGTCTTGCCAGGAAAATACTATCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAAGACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGCCAAACGAAGAAGGGCTGAAGTTCTACGATGATATGTTCGATGAAC  >  NC_000913/3043752‑3044022

ggAAAAGGGCCGAGCATTTGTGACGTTCTGACCGGTGGCGCACACGGCGTGCCGCGCGAAATCACCAAAGAAGTCTTGCCAGTAAAATACTATCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACAt                                                                                                                                     >  2:1482696/1‑140 (MQ=255)

 gAAAAGGGCCGAGCATTTGTGACGTTCTGACCGGTGGCGCACACGGCGTGCCGCGCGAAATCACCAAAGAAGTCTTGCCAGTAAAATACTATCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATc                                                                                                                                    >  2:2007349/1‑140 (MQ=255)

 gAAAAGGGCCGAGCATTTGTGACGTTCTGACCGGTGGCGCACACGGCGTGCCGCGCGAAATCACAAAAGAAGTCTTGCCAGTAAAATACTATCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATc                                                                                                                                    >  1:900144/1‑140 (MQ=255)

         ccGAGCATTTGTGACGTTCTGACCGGTGGCGCACACGGCGTGCCGCGCGAAATCACCAAAGAAGTCTTGCCAGTAAAATACTATCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTAtt                                                                                                                            >  2:329357/1‑140 (MQ=255)

            aGCATTTGTGACGTTCTGACCGGTGGCGCACACGGCGTGCCGCGCGAAATCACCAAAGAAGTCTTGCCAGTAAAATACTATCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGc                                                                                                                         >  1:1401733/1‑140 (MQ=255)

                 ttGTGACGTTCTGACCGGTGGCGCACACGGCGTGCCGCGCGAAATCACCAAAGAAGTCTTGCCAGTAAAATACTATCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGaaa                                                                                                                    <  2:1698308/140‑1 (MQ=255)

                 ttGTGACGTTCTGACCGGTGGCGCACACGGCGTGCCGCGCGAAATCACCAAAGAAGTCTTGCCAGTAAAATACTATCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGaaa                                                                                                                    <  1:329357/140‑1 (MQ=255)

                  tgtgACGTTCTGACCGGTGGCGCACACGGCGTGCCGCGCGAAATCACCAAAGAAGTCTTGCCAGTAAAATACTATCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAAt                                                                                                                   >  1:1024431/1‑140 (MQ=255)

                   gtgACGTTCTGACCGGTGGCGCACACGGCGTGCCGCGCGAAATCACCAAAGAAGTCTTGCCAGTAAAATACTATCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATg                                                                                                                  <  2:269461/140‑1 (MQ=255)

                   gtgACGTTCTGACCGGTGGCGCACACGGCGTGCCGCGCGAAATCACCAAAGAAGTCTTGCCAGTAAAATACTATCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATg                                                                                                                  <  1:361800/140‑1 (MQ=255)

                         ttCTGACCGGTGGCGCACACGGCGTGCCGCGCGAAATCACCAAAGAAGTCTTGCCAGTAAAATACTATCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTc                                                                                                            >  1:234471/1‑140 (MQ=255)

                         ttCTGACCGGTGGCGCACACGGCGTGCCGCGCGAAATCACCAAAGAAGTCTTGCCAGTAAAATACTATCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTc                                                                                                            >  2:1304847/1‑140 (MQ=255)

                           cTGACCGGTGGCGCACACGGCGTGCCGCGCGAAATCACCAAAGAAGTCTTGCCAGTAAAATACTATCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAGTACATCAAGCTATTTGCCGAAATGGGCTTCaa                                                                                                          >  2:675476/1‑140 (MQ=255)

                           cTGACCGGTGGCGCACACGGCGTGCCGCGCGAAATCACCAAAGAAGTCTTGCCAGTAAAATACTATCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCaa                                                                                                          >  2:897586/1‑140 (MQ=255)

                           cTGACCGGTGGCGCACACGGCGTGCCGCGCGAAATCACCAAAGAAGTCTTGCCAGTAAAATACTATCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCaa                                                                                                          >  1:258886/1‑140 (MQ=255)

                            tGACCGGTGGCGCACACGGCGTGCCGCGCGAAATCACCAAAGAAGTCTTGCCAGTAAAATACTATCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCaaa                                                                                                         >  1:1616521/1‑140 (MQ=255)

                            tGACCGGTGGCGCACACGGCGTGCCGCGCGAAATCACCAAAGAAGTCTTGCCAGTAAAATACTATCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCaaa                                                                                                         <  2:1401733/140‑1 (MQ=255)

                                  gTGGCGCACACGGCGTGCCGCGCGAAATCACCAAAGAAGTCTTGCCAGTAAAATACTATCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGtttt                                                                                                   >  2:1661243/1‑140 (MQ=255)

                                      cgcACACGGCGTGCCGCGCGAAATCACCAAAGAAGTCTTGCCATTAAAATACTATCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTa                                                                                               <  2:1147482/140‑1 (MQ=255)

                                      cgcACACGGCGTGCCGCGCGAAATCACCAAAGAAGTCTTGCCAGTAAAATACTATCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTa                                                                                               <  1:1661243/140‑1 (MQ=255)

                                      cgcACACGGCGTGCCGCGCGAAATCACAAAAGAAGTCTTGCCAGTAAAATACTATCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTa                                                                                               <  2:900144/140‑1 (MQ=255)

                                          cacGGCGTGCCGCGCGAAATCACCAAAGAAGTCTTGCCAGTAAAATACTATCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATc                                                                                           <  1:2007349/140‑1 (MQ=255)

                                            cGGCGTGCCGCGCGAAATCACCAAAGAAGTCTTGCCAGTAAAATACTATCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCa                                                                                         <  1:1064989/140‑1 (MQ=255)

                                            aggCGTGCCGCGCGAAATCACCAAAGAAGTCTTGCCAGTAAAATACTATCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCa                                                                                         <  2:850495/139‑1 (MQ=255)

                                             ggCGTGCCGCGCGAAATCACCAAAGAAGTCTTGCCAGTAAAATACTATCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATc                                                                                           <  1:137985/137‑1 (MQ=255)

                                             ggCGTGCCGCGCGAAATCACCAAAGAAGTCTTGCCAGTAAAATACTATCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATc                                                                                           >  2:137985/1‑137 (MQ=255)

                                             ggCGTGCCGCGCGAAATCACCAAAGAAGTCTTGCCAGTAAAATACTATCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCAt                                                                                        >  2:1388386/1‑140 (MQ=255)

                                             ggCGTGCCGCGCGAAATCACCAAAGAAGTCTTGCCAGTAAAATACTATCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCAt                                                                                        >  1:1355555/1‑140 (MQ=255)

                                                gTGCCGCGCGAAATCACCAAAGAAGTCTTGCCAGTAAAATACTATCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGc                                                                                     >  1:420861/1‑140 (MQ=255)

                                                           aaTCACCAAAGAAGTCTTGCCAGTAAAATACTATCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCa                                                                          >  1:1666229/1‑140 (MQ=255)

                                                                   aagaagTCTTGCCAGTAAAATACTATCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCa                                                                  <  2:1666229/140‑1 (MQ=255)

                                                                         tCTTGCCAGTAAAATACTATCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGc                                                            >  1:1735518/1‑140 (MQ=255)

                                                                           ttGCCAGTAAAATACTATCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCgt                                                          >  1:681111/1‑139 (MQ=255)

                                                                           ttGCCAGTAAAATACTATCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGa                                                          >  1:1362784/1‑140 (MQ=255)

                                                                             gCCAGTAAAATACTATCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATg                                                        >  2:12892/1‑140 (MQ=255)

                                                                                agtaaaaTACTATCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGaat                                                     >  2:719634/4‑139 (MQ=255)

                                                                                agtaaaaTACTATCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAg                                                     <  1:1482696/137‑1 (MQ=255)

                                                                                  taaaaTACTATCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCt                                                   <  2:1362784/139‑1 (MQ=255)

                                                                                  taaaaTACTATCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCt                                                   >  1:1716441/2‑140 (MQ=255)

                                                                                       aaCTATCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGcc                                              <  2:1716441/139‑1 (MQ=255)

                                                                                          tATCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGCCaaa                                           >  2:804851/1‑140 (MQ=255)

                                                                                          tATCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGCCaaa                                           <  1:1388386/140‑1 (MQ=255)

                                                                                            tCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGcc                                              <  2:1234698/135‑1 (MQ=255)

                                                                                            tCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGcc                                              >  1:1234698/1‑135 (MQ=255)

                                                                                            tCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGCCAAACg                                         >  1:677349/1‑140 (MQ=255)

                                                                                            tCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGCCAAACg                                         >  2:1446869/1‑140 (MQ=255)

                                                                                            tCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGCCAAACg                                         >  2:1560112/1‑140 (MQ=255)

                                                                                            tCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGCCAAACg                                         >  1:235203/1‑140 (MQ=255)

                                                                                            tCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGCCAAACg                                         >  1:146289/1‑140 (MQ=255)

                                                                                            tCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGCCAAACg                                         >  2:1747689/1‑140 (MQ=255)

                                                                                            tCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGCCAAACg                                         >  2:2101046/1‑140 (MQ=255)

                                                                                              cAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGCCAAACgaa                                       >  1:671602/1‑140 (MQ=255)

                                                                                               aaaCCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGCCAAACgaag                                      <  2:420861/140‑1 (MQ=255)

                                                                                               aaaCCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGCCAAACgaag                                      <  1:1162305/140‑1 (MQ=255)

                                                                                               aaaCCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGCCAAACgaag                                      <  1:12892/140‑1 (MQ=255)

                                                                                               aaaCCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGCCAAACgaag                                      <  1:1747689/140‑1 (MQ=255)

                                                                                               aaaCCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGCCAAACgaag                                      <  1:2101046/140‑1 (MQ=255)

                                                                                                 aCCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGCCa                                             >  1:1384238/1‑131 (MQ=255)

                                                                                                 aCCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGCCa                                             <  2:1384238/131‑1 (MQ=255)

                                                                                                 aCCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGCCAAACgaagaa                                    <  1:1560112/140‑1 (MQ=255)

                                                                                                 aCCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGCCAAACgaagaa                                    >  1:444196/1‑140 (MQ=255)

                                                                                                 aCCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGCCAAACgaagaa                                    >  1:683901/1‑140 (MQ=255)

                                                                                                 aCCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGCCAAACg                                         >  1:1273519/1‑135 (MQ=255)

                                                                                                 aCCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGCCAAACg                                         <  2:1273519/135‑1 (MQ=255)

                                                                                                   cATGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGCCAAACGAAGAAgg                                  >  2:1107546/1‑140 (MQ=255)

                                                                                                    aTGAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGCCAAACGAAGAAggg                                 >  2:40204/1‑140 (MQ=255)

                                                                                                      gAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGTTCAGCCAAACGAAGAAGGGCt                               >  1:228638/1‑140 (MQ=255)

                                                                                                      gAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGCCAAACGAAGAAGGGCt                               >  1:1305106/1‑140 (MQ=255)

                                                                                                      gAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGCCAAACGAAGAAGGGCt                               >  1:119053/1‑140 (MQ=255)

                                                                                                      gAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGCCAAACGAAGAAGGGCt                               >  2:1170956/1‑140 (MQ=255)

                                                                                                      gAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGCCAAACGAAGAAGGGCt                               >  1:1212793/1‑140 (MQ=255)

                                                                                                      gAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGCCAAACGAAGAAGGGCt                               >  1:328596/1‑140 (MQ=255)

                                                                                                      gAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGCCAAACGAAGAAGGGCt                               >  1:1550836/1‑140 (MQ=255)

                                                                                                      gAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGCCAAACGAAGAAGGGCt                               >  2:1867895/1‑140 (MQ=255)

                                                                                                      gAAGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGCCAAACGAAGAAGGGCt                               >  1:1543842/1‑140 (MQ=255)

                                                                                                       aaGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGCCAAACGAAGAAGGGCTg                              <  2:119053/140‑1 (MQ=255)

                                                                                                       aaGCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAACCAAACGAAGAAGGGCTg                              <  2:1616521/140‑1 (MQ=255)

                                                                                                         gCCGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGCCAAACGAAGAAGGGCTGaa                            <  1:1304847/140‑1 (MQ=255)

                                                                                                          ccGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGCCAAACGAAGAAGGGCTGAAg                           <  1:1401693/140‑1 (MQ=255)

                                                                                                           cGTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGTTCAGCCAAACGAAGAAGGGCTGAAGt                          <  2:228638/140‑1 (MQ=255)

                                                                                                            gTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGCCAAACGAAGAAGGGCTGAAGtt                         <  2:677349/140‑1 (MQ=255)

                                                                                                            gTTGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGCCAAACGAAGAAGGGCTGAAGtt                         <  2:671602/140‑1 (MQ=255)

                                                                                                             ttGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGCCAAACGAAGAAGGGCTGAAGttt                        >  2:304983/1‑139 (MQ=255)

                                                                                                             ttGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGCCAAACGAAGAAGGGCTGAAGTTc                        >  1:1851063/1‑140 (MQ=255)

                                                                                                              tGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGCCAAACGAAGAAGGGCTGAAGTTCt                       <  1:40204/140‑1 (MQ=255)

                                                                                                              tGATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTGCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGCCAAACGAAGAAGGGCTGAAGTTCt                       <  2:1024431/140‑1 (MQ=255)

                                                                                                               gATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGCCAAACGAAGAAGGGCTGAAGTTCTa                      >  1:1724052/1‑140 (MQ=255)

                                                                                                               gATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGCCAAACGAAGAAGGGCTGAAGTTCTa                      <  1:1446869/140‑1 (MQ=255)

                                                                                                               gATTTTTATGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGCCAAACGAAGAAGGGCTGAAGTTCTa                      <  1:1170956/140‑1 (MQ=255)

                                                                                                                      aTGGTCACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGCCAAACGAAGAAGGGCTGAAGTTCTACgatgat               <  2:235203/140‑1 (MQ=255)

                                                                                                                           cACTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGCCAAACGAAGAAGGGCTGAAGTTCTACGATGATATGtt          <  2:234471/140‑1 (MQ=255)

                                                                                                                            aCTATAAGGAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGCCAAACGAAGAAGGGCTGAAGTTCTACGATGATATGTTc         >  1:693722/1‑140 (MQ=255)

                                                                                                                                   ggAATACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGCCAAACGAAGAAGGGCTGAAGTTCTACGATGATATGTTCGATGAAc  <  2:444196/140‑1 (MQ=255)

GGAAAAGGGCCGAGCATTTGTGACGTTCTGACCGGTGGCGCACACGGCGTGCCGCGCGAAATCACCAAAGAAGTCTTGCCAGGAAAATACTATCCAAACCATGAAGCCGTTGATTTTTATGGTCACTATAAGGAAGACATCAAGCTATTTGCCGAAATGGGCTTCAAATGTTTTCGTACATCCATTGCCTGGACGCGCATTTTTCCAAAAGGCGATGAAGCTCAGCCAAACGAAGAAGGGCTGAAGTTCTACGATGATATGTTCGATGAAC  >  NC_000913/3043752‑3044022

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A