Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,054,775	G→T	P22P (CCC→CCA)	pepP ←	proline aminopeptidase P II

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,054,775	0	G	T	100.0%	420.0 / NA	121	P22P (CCC→CCA)	pepP	proline aminopeptidase P II
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (63/58); total (63/58)

Only 100 of 121 total aligned reads displayed.

TTTTAATCAGCACCAGCACCGCTTCCGGTTCGTTAAAGCCGGTGAAGTACCAGAAGTCACTGTTCTGACGATAGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTCCTTACGTTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGA  >  NC_000913/3054639‑3054911

ttttAATCAGCACCAGCACCGCTTCCGGTTCGTTAAAGCCGGTGAAGTACCAGAAGTCACTGTTCTGACGATAGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGt                                                                                                                                       <  1:308355/140‑1 (MQ=255)

 tttAATCAGCACCAGCACCGCTTCCGGTTCGTTAAAGCCGGTGAAGTACCAGAAGTCACTGTTCTGACGATAGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGtt                                                                                                                                      >  1:640677/1‑140 (MQ=255)

          caccagcaccGCTTCCGGTTCGTTAAAGCCGGTGAAGTACCAGAAGTCACTGTTCTGACGATAGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCt                                                                                                                             >  2:902786/1‑140 (MQ=255)

          caccagcaccGCTTCCGGTTCGTTAAAGCCGGTGAAGTACCAGAAGTCACTGTTCTGACGATAGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCt                                                                                                                             <  1:460207/140‑1 (MQ=255)

              agcaccGCTTCCGGTTCGTTAAAGCCGGTGAAGTACCAGAAGTCACTGTTCTGACGATAGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTccac                                                                                                                         <  2:1686387/140‑1 (MQ=255)

              agcaccGCTTCCGGTTCGTTAAAGCCGGTGAAGTACCAGAAGTCACTGTTCTGACGATAGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTccac                                                                                                                         <  2:1774880/140‑1 (MQ=255)

               gcaccGCTTCCGGTTCGTTAAAGCCGGTGAAGTACCAGAAGTCACTGTTCTGACGATAGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTccacc                                                                                                                        >  2:1107787/1‑140 (MQ=255)

                    gCTTCCGGTTCGTTAAAGCCGGTGAAGTACCAGAAGTCACTGTTCTGACGATAGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGc                                                                                                                   >  1:123937/1‑140 (MQ=255)

                    gCTTCCGGTTCGTTAAAGCCGGTGAAGTACCAGAAGTCACTGTTCTGACGATAGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGc                                                                                                                   >  2:1665604/1‑140 (MQ=255)

                        ccGGTTCGTTAAAGCCGGTGAAGTACCAGAAGTCACTGTTCTGACGATAGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGa                                                                                                               >  2:470116/1‑140 (MQ=255)

                          ggTTCGTTAAAGCCGGTGAAGTACCAGAAGTCACTGTTCTGACGATAGGGGCATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACg                                                                                                             >  1:1511356/1‑140 (MQ=255)

                             tCGTTAAAGCCGGTGAAGTACCAGAAGTCACTGTTCTGACGATAGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCg                                                                                                          >  2:131908/1‑140 (MQ=255)

                              cGTTAAAGCCGGTGAAGTACCAGAAGTCACTGTTCTGACGATAGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGa                                                                                                         <  2:336137/140‑1 (MQ=255)

                                ttAAAGCCGGTGAAGTACCAGAAGTCACTGTTCTGACGATAGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACg                                                                                                       >  1:1722469/1‑140 (MQ=255)

                                    aGCCGGTGAAGTACCAGAAGTCACTGTTCTGACGATAGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGa                                                                                                   <  1:572646/140‑1 (MQ=255)

                                      ccGGTGAAGTACCAGAAGTCACTGTTCTGACGATAGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGaaa                                                                                                 <  2:652213/140‑1 (MQ=255)

                                       cGGTGAAGTACCAGAAGTCACTGTTCTGACGATAGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCTTTTGCTCCACCAGGGCCTGACGGCGACGCTGAAAc                                                                                                <  2:4001/140‑1 (MQ=255)

                                          tGAAGTACCAGAAGTCACTGTTCTGACGATAGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAActct                                                                                             >  2:618484/1‑140 (MQ=255)

                                            aaGTACCAGAAGTCACTGTTCTGACGATAGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTg                                                                                           <  1:440485/140‑1 (MQ=255)

                                             aGTACCAGAAGTCACTGTTCTGACGATAGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGc                                                                                          <  2:2134015/140‑1 (MQ=255)

                                             aGTACCAGAAGTCACTGTTCTGACGATAGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGc                                                                                          <  1:1665604/140‑1 (MQ=255)

                                              gTACCAGAAGTCACTGTTCTGACGATAGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGcc                                                                                         <  2:1991373/140‑1 (MQ=255)

                                               tACCAGAAGTCACTGTTCTGACGATAGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCg                                                                                        <  1:470116/140‑1 (MQ=255)

                                                aCCAGAAGTCACTGTTCTGACGATAGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCgg                                                                                       <  1:796569/140‑1 (MQ=255)

                                                aCCAGAAGTCACTGTTCTGACGATAGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCgg                                                                                       >  1:237094/1‑140 (MQ=255)

                                                 acAGAAGTCACTGTTCTGACGATAGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCggg                                                                                      <  2:762322/139‑1 (MQ=255)

                                                      aGTCACTGTTCTGACGATAGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGatat                                                                                  >  2:1522354/1‑139 (MQ=255)

                                                      aGTCACTGTTCTGACGATAGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGatat                                                                                  <  1:1522354/139‑1 (MQ=255)

                                                      aGTCACTGTTCTGACGATAGGGGTATTCCCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATAtc                                                                                 <  2:2016829/140‑1 (MQ=255)

                                                        tCACTGTTCTGACGATAGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATAtctc                                                                               <  1:131908/140‑1 (MQ=255)

                                                          aCTGTTCTGACGATAGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATctcac                                                                             <  1:218600/140‑1 (MQ=255)

                                                          aCTGTTCTGACGATAGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATctcac                                                                             >  2:1917938/1‑140 (MQ=255)

                                                          aCTGTTCTGACGATAGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATctcac                                                                             >  1:650820/1‑140 (MQ=255)

                                                          aCTGTTCTGACGATAGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGAGACGCTGAAACTCTTGCCGGGATATctcac                                                                             <  1:965875/140‑1 (MQ=255)

                                                            tGTTCTGACGATAGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATAtc                                                                                 >  2:1795933/1‑134 (MQ=255)

                                                            tGTTCTGACGATAGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATAtc                                                                                 <  1:1795933/134‑1 (MQ=255)

                                                            tGTTCTGACGATAGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATctcactc                                                                           <  1:990861/140‑1 (MQ=255)

                                                            tGTTCTGACGATAGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATctcactc                                                                           >  2:330487/1‑140 (MQ=255)

                                                               tCTGACGATAGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATa                                                                        >  2:1010738/1‑140 (MQ=255)

                                                                cTGACGATAGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATaa                                                                       <  1:1160407/140‑1 (MQ=255)

                                                                 tGACGATAGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAac                                                                      >  1:56399/1‑140 (MQ=255)

                                                                 tGACGATAGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAac                                                                      >  1:443592/1‑140 (MQ=255)

                                                                  gACGATAGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAaca                                                                     <  2:402001/140‑1 (MQ=255)

                                                                  gACGATAGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAaca                                                                     <  2:1295695/140‑1 (MQ=255)

                                                                    cGATAGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACAct                                                                   <  1:1368302/140‑1 (MQ=255)

                                                                      aTAGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACAgtct                                                                 >  1:1871779/1‑140 (MQ=255)

                                                                      aTAGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACActct                                                                 >  2:46732/1‑140 (MQ=255)

                                                                        aGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATAtct                                                                                <  1:641454/123‑1 (MQ=255)

                                                                        aGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATAtct                                                                                >  2:641454/1‑123 (MQ=255)

                                                                        aGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACtctct                                                               >  2:1314709/1‑139 (MQ=255)

                                                                        aGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTcc                                                               >  1:760419/1‑140 (MQ=255)

                                                                        aGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTcc                                                               >  2:1274679/1‑140 (MQ=255)

                                                                        aGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTcc                                                               >  2:1564388/1‑140 (MQ=255)

                                                                        aGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTcc                                                               >  1:2085042/1‑140 (MQ=255)

                                                                        aGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTcc                                                               >  1:1188271/1‑140 (MQ=255)

                                                                        aGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTcc                                                               >  1:1973309/1‑140 (MQ=255)

                                                                        aGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCACTCCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTcc                                                               >  2:1751173/1‑140 (MQ=255)

                                                                          gggTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTCCtt                                                             >  1:1232386/1‑140 (MQ=255)

                                                                             tATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTCCTTACg                                                          >  2:395351/1‑140 (MQ=255)

                                                                               ttCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTCCTTACGtt                                                        >  1:684505/1‑140 (MQ=255)

                                                                               ttCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTCCTTACGtt                                                        >  1:1853662/1‑140 (MQ=255)

                                                                               ttCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTCCTTACGtt                                                        >  1:139953/1‑140 (MQ=255)

                                                                               ttCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTCCTTACGtt                                                        >  1:438288/1‑140 (MQ=255)

                                                                                    tGTCGGCGCTACGTGTTACTTCTGGTGCAACAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTCCTTACGttttttt                                                   >  2:590670/1‑139 (MQ=255)

                                                                                     gTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTCCTTACGTTTTTTGt                                                  >  2:252190/1‑140 (MQ=255)

                                                                                     gTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTCCTTACGTTTTTTGt                                                  >  2:1143176/1‑140 (MQ=255)

                                                                                       cGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTCCTTACGTTTTTTGttt                                                <  1:1406343/140‑1 (MQ=255)

                                                                                        ggCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTCCTTACGTTTTTTGtttt                                               <  2:139953/140‑1 (MQ=255)

                                                                                        ggCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTCCTTACGTTTTTTGtttt                                               <  1:1107787/140‑1 (MQ=255)

                                                                                        ggCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTCCTTACGTTTTTTGtttt                                               <  2:123937/140‑1 (MQ=255)

                                                                                         gcgcTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTCCTTACGTTTTTTGttttt                                              >  1:785618/1‑140 (MQ=255)

                                                                                                    tACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTCCTTACGTTTTTTGTTTTTAGTGTAGAGTc                                   <  1:857078/140‑1 (MQ=255)

                                                                                                    tACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTCCTTACGTTTTTTGTTTTTAGTGTAGAGTc                                   <  2:237094/140‑1 (MQ=255)

                                                                                                       ttCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTCCTTACGTTTTTTGTTTTTAGTGTAGAGTCGGt                                <  1:2036391/140‑1 (MQ=255)

                                                                                                       ttCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTCCTTACGTTTTTTGTTTTTAGTGTAGAGTCGGt                                <  2:2061755/140‑1 (MQ=255)

                                                                                                         cTGGTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTCCTTACGTTTTTTGTTTTTAGTGTAGAGTCGGttt                              >  1:289115/1‑140 (MQ=255)

                                                                                                           ggTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTCCTTACGTTTTTTGTTTTTAGTGTAGAGTCGGttttt                            >  2:1215415/1‑140 (MQ=255)

                                                                                                           ggTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTCCTTACGTTTTTTGTTTTTAGTGTAGAGTCGGttttt                            >  2:14953/1‑140 (MQ=255)

                                                                                                           ggTGCAGCAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTCCTTACGTTTTTTGTTTTTAGTGTAGAGTCGGttttt                            >  2:14302/1‑140 (MQ=255)

                                                                                                           ggTGCAGAAAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGATGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTCCTTACGTTTTTTGTTTTTAGTGTAGAGTCGGttttt                            >  2:2018068/1‑140 (MQ=255)

                                                                                                              gcagcaAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTCCTTACGTTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTa                         >  2:489719/1‑140 (MQ=255)

                                                                                                                agcaAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTCCTTACGTTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACt                       >  2:945484/1‑140 (MQ=255)

                                                                                                                agcaAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTCCTTACGTTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACt                       >  1:806247/1‑140 (MQ=255)

                                                                                                                 gcaAAAATCAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTCCTTACGTTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACtt                      >  2:837810/1‑140 (MQ=255)

                                                                                                                         cAGCGCGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTCCTTACGTTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGcgcg              <  1:489719/140‑1 (MQ=255)

                                                                                                                           gcgcGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTCCTTACGTTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGcggt            <  2:1188271/140‑1 (MQ=255)

                                                                                                                           gcgcGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTCCTTACGTTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGcggt            <  1:330487/140‑1 (MQ=255)

                                                                                                                           gcgcGGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTCCTTACGTTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGcggt            <  2:545821/140‑1 (MQ=255)

                                                                                                                            cgcgGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTCCTTACGTTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGcggtc           <  1:560301/140‑1 (MQ=255)

                                                                                                                            cgcgGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTCCTTACGTTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGcggtc           <  2:650820/140‑1 (MQ=255)

                                                                                                                            cgcgGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTCCTTACGTTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGcggtc           >  2:1557940/1‑140 (MQ=255)

                                                                                                                            cgcgGCGCTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTCCTTACGTTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGcggtc           <  1:2018299/140‑1 (MQ=255)

                                                                                                                                 cgcTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTCCTTACGTTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTg      <  2:640677/140‑1 (MQ=255)

                                                                                                                                 cgcTGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTCCTTACGTTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTg      <  1:395351/140‑1 (MQ=255)

                                                                                                                                    tGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTCCTTACGTTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg   <  2:1476811/140‑1 (MQ=255)

                                                                                                                                    tGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTCCTTACGTTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg   <  2:1995407/140‑1 (MQ=255)

                                                                                                                                    tGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTCCTTACGTTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg   <  1:1718960/140‑1 (MQ=255)

                                                                                                                                    tGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTCCTTACGTTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg   <  1:1557940/140‑1 (MQ=255)

                                                                                                                                    tGCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTCCTTACGTTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCgg   <  1:1439767/140‑1 (MQ=255)

                                                                                                                                     gCCTGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTCCTTACGTTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGa  <  1:1564388/140‑1 (MQ=255)

TTTTAATCAGCACCAGCACCGCTTCCGGTTCGTTAAAGCCGGTGAAGTACCAGAAGTCACTGTTCTGACGATAGGGGTATTCGCTGTCGGCGCTACGTGTTACTTCTGGTGCAGCAAAAATCAGCGCGGCGCTGCCGGGTTGCATTTGCTCCACCAGGGCCTGACGGCGACGCTGAAACTCTTGCCGGGATATCTCACTCATAACACTCTCCTTACGTTTTTTGTTTTTAGTGTAGAGTCGGTTTTTGTACTTCTGGCGCGGTCGGTTGCGGA  >  NC_000913/3054639‑3054911

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A