Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,089,989	G→T	E79* (GAA→TAA)	yggI →	conserved protein YggI

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,089,989	0	G	T	100.0%	407.5 / NA	118	E79* (GAA→TAA)	yggI	conserved protein YggI
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (60/58); total (60/58)

Only 100 of 119 total aligned reads displayed.

CCCGGAGCCAAAACTCTCTTACACCCAGCGCGGAACCTCCGCCGGAACGGCCTGGCTGGAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACGAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAGTTCGAACTGCAATCCGTGCGTC  >  NC_000913/3089853‑3090124

cccGGAGCCAAAACTCTCTTACACCCAGCGCGGAACCTCCGCCGGAACGGCCTGGCTGGAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAAc                                                                                                                                      >  1:2093747/1‑140 (MQ=255)

     aGCCAAAACTCTCTTACACCCAGCGCGGAACCTCCGCCGGAACGGCCTGGCTGGAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGca                                                                                                                                 >  1:420008/1‑140 (MQ=255)

     aGCCAAAACTCTCTTACACCCAGCGCGGAACCTCCGCCGGAACGGCCTGGCTGGAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGca                                                                                                                                 >  2:68261/1‑140 (MQ=255)

     aGCCAAAACTCTCTTACACCCAGCGCGGAACCTCCGCCGGAACGGCCTGGCTGGAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGca                                                                                                                                 >  2:193807/1‑140 (MQ=255)

      gCCAAAACTCTCTTACACCCAGCGCGGAACCTCCGCCGGAACGGCCTGGCTGGAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGcac                                                                                                                                <  2:1713028/140‑1 (MQ=255)

      gCCAAAACTCTCTTACACCCAGCGCGGAACCTCCGCCGGAACGGCCTGGCTGGAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGcac                                                                                                                                <  1:1432597/140‑1 (MQ=255)

       ccAAAACTCTCTTACACCCAGCGCGGAACCTCCGCCGGAACGGCCTGGCTGGAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGcaca                                                                                                                               >  2:692656/1‑140 (MQ=255)

           aaCTCTCTTACACCCAGCGCGGAACCTCCGCCGGAACGGCCTGGCTGGAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTg                                                                                                                           <  1:744729/140‑1 (MQ=255)

           aaCTCTCTTACACCCAGCGCGGAACCTCCGCCGGAACGGCCTGGCTGGAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTg                                                                                                                           <  2:659539/140‑1 (MQ=255)

           aaCTCTCTTACACCCAGCGCGGAACCTCCGCCGGAACGGCCTGGCTGGAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTg                                                                                                                           <  2:2093747/140‑1 (MQ=255)

               ctctTACACCCAGCGCGGAACCTCCGCCGGAACGGCCTGGCTGGAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTgg                                                                                                                       <  2:420008/140‑1 (MQ=255)

               ctctTACACCCAGCGCGGAACCTCCGCCGGAACGGCCTGGCTGGAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTgg                                                                                                                       <  2:1705616/140‑1 (MQ=255)

                 ctTACACCCAGCGCGGAACCTCCGCCGGAACGGCCTGGCTGGAAAGCTATGAACCTCACCTCAATCCCGTTTTCCTGTTGGAAAACAGTGAAGAATTTAATGACACCGAGCTACCGCACTAAATGGCACATTTGCTGGTa                                                                                                                     >  2:2024902/1‑140 (MQ=255)

                 ctTACACCCAGCGCGGAACCTCCGCCGGAACGGCCTGGCTGGAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTa                                                                                                                     <  2:1238263/140‑1 (MQ=255)

                        ccAGCGCGGAACCTCCGCCGGAACGGCCTGGCTGGAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAAc                                                                                                              >  2:1410305/1‑140 (MQ=255)

                          aGCGCGGAACCTCCGCCGGAACGGCCTGGCTGGAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACAt                                                                                                            >  2:1246951/1‑140 (MQ=255)

                          aGCGCGGAACCTCCGCCGGAACGGCCTGGCTGGAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACAt                                                                                                            >  2:2105943/1‑140 (MQ=255)

                          aGCGCGGAACCTCCGCCGGAACGGCCTGGCTGGAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACAt                                                                                                            >  2:1680806/1‑140 (MQ=255)

                          aGCGCGGAACCTCCGCCGGAACGGCCTGGCTGGAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACAt                                                                                                            >  1:1839182/1‑140 (MQ=255)

                          aGCGCGGAACCTCCGCCGGAACGGCCTGGCTGGAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACAt                                                                                                            >  2:1663477/1‑140 (MQ=255)

                          aGCGCGGAACCTCCGCCGGAACGGCCTGGCTGGAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACAt                                                                                                            >  1:2011788/1‑140 (MQ=255)

                            cgcgGAACCTCCGCCGGAACGGCCTGGCTGGAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACAttt                                                                                                          >  2:581792/1‑140 (MQ=255)

                            cgcgGAACCTCCGCCGGAACGGCCTGGCTGGAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACAttt                                                                                                          >  2:1544832/1‑140 (MQ=255)

                            cgcgGAACCTCCGCCGGAACGGCCTGGCTGGAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACAttt                                                                                                          >  2:360339/1‑140 (MQ=255)

                            cgcgGAACCTCCGCCGGAACGGCCTGGCTGGAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACAttt                                                                                                          >  2:2117014/1‑140 (MQ=255)

                            cgcgGAACCTCCGCCGGAACGGCCTGGCTGGAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACAttt                                                                                                          >  1:198307/1‑140 (MQ=255)

                            cgcgGAACCTCCGCCGGAACGGCCTGGCTGGAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACAttt                                                                                                          >  2:2062761/1‑140 (MQ=255)

                            cgcgGAACCTCCGCCGGAACGGCCTGGCTGGAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACAttt                                                                                                          >  2:1080983/1‑140 (MQ=255)

                            cgcgGAACCTCCGCCGGAACGGCCTGGCTGGAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCCGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACAttt                                                                                                          >  1:27331/1‑140 (MQ=255)

                                    cTCCGCCGGAACGGCCTGGCTGGAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCcgcg                                                                                                  <  2:198307/140‑1 (MQ=255)

                                      ccgccgGAACGGCCTGGCTGGAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTa                                                                                                >  1:2043407/1‑140 (MQ=255)

                                      ccgccgGAACGGCCTGGCTGGAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTa                                                                                                >  1:1605853/1‑140 (MQ=255)

                                       cgccgGAACGGCCTGGCTGGAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAg                                                                                               <  1:331578/140‑1 (MQ=255)

                                         ccgGAACGGCCTGGCTGGAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAgcg                                                                                             <  1:360339/140‑1 (MQ=255)

                                         ccgGAACGGCCTGGATAGAAAGCTATGAAATTCGCCTCAATCCCGTTTTGATGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAgcg                                                                                             <  2:1374223/140‑1 (MQ=255)

                                             aaCGGCCTGGCTGGAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCcac                                                                                         <  2:614359/140‑1 (MQ=255)

                                             aaCGGCCTGGCTGGAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCcac                                                                                         >  2:1778725/1‑140 (MQ=255)

                                             aaCGGCCTGGCTGGAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCcac                                                                                         >  2:102914/1‑140 (MQ=255)

                                                 gCCTGGCTGGAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCATTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATgg                                                                                     >  1:70931/1‑140 (MQ=255)

                                                   ctggctggAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCGCTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCa                                                                                   <  2:1350370/140‑1 (MQ=255)

                                                   ctggctggAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCa                                                                                   >  1:1438382/1‑140 (MQ=255)

                                                   ctggctggAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCa                                                                                   <  1:757553/140‑1 (MQ=255)

                                                   ctggctggAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCa                                                                                   <  1:68261/140‑1 (MQ=255)

                                                   ctggctggAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCa                                                                                   <  1:1293570/140‑1 (MQ=255)

                                                   atggctggAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCa                                                                                   <  2:1095954/139‑1 (MQ=255)

                                                      gctggAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAag                                                                                >  2:325935/1‑140 (MQ=255)

                                                      gctggAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAag                                                                                <  1:1593741/140‑1 (MQ=255)

                                                        tggAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAagag                                                                              <  1:1080983/140‑1 (MQ=255)

                                                          gAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGagtg                                                                            >  1:1533677/1‑140 (MQ=255)

                                                          gAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGagtg                                                                            <  1:2117014/140‑1 (MQ=255)

                                                           aaaGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGagtgg                                                                           <  1:1680806/140‑1 (MQ=255)

                                                           aaaGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGagtgg                                                                           >  1:1873704/1‑140 (MQ=255)

                                                            aaGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGagtgga                                                                          >  2:1066028/1‑140 (MQ=255)

                                                             aGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGagtggaa                                                                         <  1:1246951/140‑1 (MQ=255)

                                                               cTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGTTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCTACATGGCAAAGagtggaagt                                                                       <  1:1244714/140‑1 (MQ=255)

                                                                tATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGagtggaagtg                                                                      >  1:1220498/1‑140 (MQ=255)

                                                                tATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGagtggaagtg                                                                      >  2:23121/1‑140 (MQ=255)

                                                                  tGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGagtggaagtgga                                                                    <  2:1533677/140‑1 (MQ=255)

                                                                  tGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGagtggaagtgga                                                                    <  1:440358/140‑1 (MQ=255)

                                                                   gAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGgat                                                                   <  2:1272445/140‑1 (MQ=255)

                                                                         cGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAagag                                                                              <  2:1334737/123‑1 (MQ=255)

                                                                         cGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAagag                                                                              >  1:1334737/1‑123 (MQ=255)

                                                                         cGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGa                                                             >  1:1636497/1‑140 (MQ=255)

                                                                         cGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGa                                                             >  1:1364746/1‑140 (MQ=255)

                                                                            cTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGaaaa                                                          <  1:161618/140‑1 (MQ=255)

                                                                               aaTCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGAAAACGt                                                       <  2:566100/140‑1 (MQ=255)

                                                                                    cGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGAAAACGTGCTgg                                                  <  2:163976/140‑1 (MQ=255)

                                                                                    cGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGAAAACGTGCTgg                                                  <  1:692656/140‑1 (MQ=255)

                                                                                      ttttGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGAAAACGTGCTGGgt                                                >  2:1353607/1‑140 (MQ=255)

                                                                                      ttttGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGAAAACGTGCTGGgt                                                >  2:1417929/1‑140 (MQ=255)

                                                                                           cTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGAAAACGTGCTGGGTGTTcc                                           >  2:2138279/1‑140 (MQ=255)

                                                                                              ttGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGAAAACGTGCTGGGTGTTcccgc                                        <  1:473464/140‑1 (MQ=255)

                                                                                                ggAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGAAAACGTGCTGGGTGTTcccgccc                                      >  2:168759/1‑140 (MQ=255)

                                                                                                   aaaCAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGAAAACGTGCTGGGTGTTCCCGCCcgtc                                   >  1:1323433/1‑140 (MQ=255)

                                                                                                      cAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTa                                <  1:1353607/140‑1 (MQ=255)

                                                                                                        gTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACg                              >  2:1445323/1‑140 (MQ=255)

                                                                                                        gTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACg                              >  2:45734/1‑140 (MQ=255)

                                                                                                        gTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACg                              >  2:1831610/1‑140 (MQ=255)

                                                                                                        gTGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTAGGCCGCGTAGCGCCACATGGCAAGGGGGGGAA‑TGGGTGGTTGGAAACGTGCTTGGGGTTTCCCGCcgtcgttacc                             >  2:1791462/1‑136 (MQ=255)

                                                                                                         tGAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACGc                             >  1:1493157/1‑140 (MQ=255)

                                                                                                          gAAGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACGCa                            <  1:1663477/140‑1 (MQ=255)

                                                                                                           aaGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACGCAt                           >  2:1419611/1‑140 (MQ=255)

                                                                                                            aGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACGCATc                          <  2:70931/140‑1 (MQ=255)

                                                                                                            aGCTTTTATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACGCATc                          <  2:1370729/140‑1 (MQ=255)

                                                                                                               ttttATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAGt                       <  1:1417929/140‑1 (MQ=255)

                                                                                                                 ttATTGAAGAAGTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAGTTc                     >  1:850058/1‑140 (MQ=255)

                                                                                                                       aagaagTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAGTTCGAACTg               <  2:1839182/140‑1 (MQ=255)

                                                                                                                        agaagTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAGTTCGAACTGc              >  2:623433/1‑140 (MQ=255)

                                                                                                                         gaagTGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAGTTCGAACTGCa             >  2:1107820/1‑140 (MQ=255)

                                                                                                                             tGGTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAGTTCGAACTGCAATcc         >  2:1286976/1‑140 (MQ=255)

                                                                                                                               gTACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAGTTCGAACTGCAATCCGt       >  1:113078/1‑140 (MQ=255)

                                                                                                                                tACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAGTTCGAACTGCAATCCGTg      <  1:2138279/140‑1 (MQ=255)

                                                                                                                                tACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAGTTCGAACTGCAATCCGTg      <  1:2105943/140‑1 (MQ=255)

                                                                                                                                tACCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAGTTCGAACTGCAATCCGTg      <  1:1343498/140‑1 (MQ=255)

                                                                                                                                 aCCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAGTTCGAACTGCAATCCGTGc     >  2:41199/1‑140 (MQ=255)

                                                                                                                                 aCCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAGTTCGAACTGCAATCCGTGc     >  2:919288/1‑140 (MQ=255)

                                                                                                                                 aCCGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAGTTCAAACTGCAATCCGTGc     >  2:199825/1‑140 (MQ=255)

                                                                                                                                   cGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGGGTGGAAGTGGATGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAGTTCGAACTGCAATCCGTGCGt   >  2:1913425/1‑140 (MQ=255)

                                                                                                                                   cGCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAGTTCGAACTGCAATCCGTGCGt   <  2:1565786/140‑1 (MQ=255)

                                                                                                                                    gCACTAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAGTTCGAACTGCAATCCGTGCGTc  >  2:878045/1‑140 (MQ=255)

CCCGGAGCCAAAACTCTCTTACACCCAGCGCGGAACCTCCGCCGGAACGGCCTGGCTGGAAAGCTATGAAATTCGCCTCAATCCCGTTTTGCTGTTGGAAAACAGTGAAGCTTTTATTGAAGAAGTGGTACCGCACGAACTGGCACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAGTTCGAACTGCAATCCGTGCGTC  >  NC_000913/3089853‑3090124

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A