Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F48 I1 R1 508 125.6 4303852 99.2% 4269421 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,091,547 C→A A138A (GCC→GCA)  rsmE → 16S rRNA m(3)U1498 methyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,091,5470CA100.0% 397.3 / NA 114A138A (GCC→GCA) rsmE16S rRNA m(3)U1498 methyltransferase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (60/54);  total (60/54)

Only 100 of 115 total aligned reads displayed.

GAATTTACTATCCAGAAATCGATCGAACTCGGTGTAAGCCTCATTACGCCACTTTTTTCTGAGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCCTGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGGTGTGCAGAGCAGGATGAAGGACTGAAACTGAATCTTCACCCGCGCGCCAGTAACAGCATCAATACGTTGCCGT  >  NC_000913/3091410‑3091683
                                                                                                                                         |                                                                                                                                        
gAATTTACTATCCAGAAATCGATCGAACTCGGTGTAAGCCTCATTACGCCACTTTTTTCTGAGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCAtg                                                                                                                                        >  1:97778/1‑140 (MQ=255)
gAATTTACTATCCAGAAATCGATCGAACTCGGTGTAAGCCTCATTACGCCACTTTTTTCTGAGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCAtg                                                                                                                                        >  1:1355298/1‑140 (MQ=255)
  aTTTACTATCCAGAAATCGATCGAACTCGGTGTAAGCCTCATTACGCCACTTTTTTCTGAGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCAtgtg                                                                                                                                      >  1:812542/1‑140 (MQ=255)
    ttACTATCCAGAAATCGATCGAACTCGGTGTAAGCCTCATTACGCCACTTTTTTCTGAGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAg                                                                                                                                    <  1:1993887/140‑1 (MQ=255)
        tATCCAGAAATCGATCGAACTCGGTGTAAGCCTCATTACGCCACTTTTTTCTGAGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAgt                                                                                                                                <  2:899329/140‑1 (MQ=255)
        tATCCAGAAATCGATCGAACTCGGTGTAAGCCTCATTACGCCACTTTTTTCTGAGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAgt                                                                                                                                <  1:1268284/140‑1 (MQ=255)
        tATCCAGAAATCGATCGAACTCGGTGTAAGCCTCATTACGCCACTTTTTTCTGAGCACTGCGGCGTTAAACTGTATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGTAATTGTTTTCAATTGCTGCTTTTGAGCatt                                                                                                                                >  2:2024235/1‑138 (MQ=255)
         aTCCAGAAATCGATCGAACTCGGTGTAAGCCTCATTACGCCACTTTTTTCTGAGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAgtg                                                                                                                               <  2:1868321/140‑1 (MQ=255)
          tCCGGAAATCGATCGAACTCGGTGTAAGCCTCATTACGCCACTTTTTTCTGAGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAgtgt                                                                                                                              <  1:2113351/140‑1 (MQ=255)
           ccAGAAATCGATCGAACTCGGTGTAAGCCTCATTACGCCACTTTTTTCTGAGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGtgtg                                                                                                                             >  1:1088707/1‑140 (MQ=255)
                    gatcgaACTCGGTGTAAGCCTCATTACGCCACTTTTTTCTGAGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAAcc                                                                                                                    >  1:1044851/1‑140 (MQ=255)
                       cgaACTCGGTGTAAGCCTCATTACGCCACTTTTTTCTGAGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCggg                                                                                                                 <  1:162490/140‑1 (MQ=255)
                                tgtAAGCCTCATTACGCCACTTTTTTCTGAGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTTAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGaaa                                                                                                        >  2:1673164/1‑140 (MQ=255)
                                tgtAAGCCTCATTACGCCACTTTTCTCTGAGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGaaa                                                                                                        >  2:403573/1‑140 (MQ=255)
                                 gtAAGCCTCATTACGCCACTTTTTTCTGAGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAAt                                                                                                       <  2:1355298/140‑1 (MQ=255)
                                    aGCCTCATTACGCCACTTTTTTCTGAGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATcct                                                                                                    >  1:660921/1‑139 (MQ=255)
                                    aGCCTCATTACGCCACTTTTTTCTGAGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCg                                                                                                    >  2:939176/1‑140 (MQ=255)
                                    aGCCTCATTACGCCACTTTTTTCTGAGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCg                                                                                                    >  2:1521950/1‑140 (MQ=255)
                                    aGCCTCATTACGCCACTTTTTTCTGAGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCg                                                                                                    >  1:574996/1‑140 (MQ=255)
                                      ccTCATTACGCCACTTTTTTCTGAGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTc                                                                                                  >  2:1877038/1‑140 (MQ=255)
                                          aTTACGCCACTTTTTTCTGAGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAgt                                                                                              >  2:875593/1‑139 (MQ=255)
                                          aTTACGCCACTTTTTTCTGAGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGc                                                                                              >  2:43601/1‑140 (MQ=255)
                                          aTTACGCCACTTTTTTCTGAGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGc                                                                                              >  2:1616255/1‑140 (MQ=255)
                                          aTTACGCCACTTTTTTCTGAGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGc                                                                                              >  2:1670742/1‑140 (MQ=255)
                                          aTTACGCCACTTTTTTCTGAGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGc                                                                                              >  1:1926545/1‑140 (MQ=255)
                                          aTTACGCCACTTTTTTCTGAGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGc                                                                                              <  2:1088707/140‑1 (MQ=255)
                                          aTTACGCCACTTTTTTCTGAGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGc                                                                                              >  1:1690725/1‑140 (MQ=255)
                                          aTTACGCCACTTTTTTCTGAGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGc                                                                                              >  1:712581/1‑140 (MQ=255)
                                          aTTACGCCACTTTTTTCTGAGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGc                                                                                              >  2:79311/1‑140 (MQ=255)
                                          aTTACGCCACTTTTTTCTGAGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGc                                                                                              >  1:1042887/1‑140 (MQ=255)
                                          aTTACGCCACTTTTTTCTGAGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGc                                                                                              >  1:865173/1‑140 (MQ=255)
                                            tACGCCACTTTTTTCTGAGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGa                                                                                            <  2:1044851/140‑1 (MQ=255)
                                            tACGCCACTTTTTTCTGAGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGa                                                                                            <  2:101257/140‑1 (MQ=255)
                                            tACGCCACTTTTTTCTGAGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGCGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGa                                                                                            <  1:955905/140‑1 (MQ=255)
                                              cGCCACTTTTTTCTGAGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATg                                                                                          <  2:1606849/140‑1 (MQ=255)
                                                ccACTTTTTTCTGAGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGa                                                                                        >  2:755289/1‑140 (MQ=255)
                                                 cACTTTTTTCTGAGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGAt                                                                                       >  1:1471403/1‑140 (MQ=255)
                                                 cACTTTTTTCTGAGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGAt                                                                                       >  2:548982/1‑140 (MQ=255)
                                                    ttttttCTGAGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTg                                                                                    <  1:1673164/140‑1 (MQ=255)
                                                         tCTGAGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGc                                                                               >  2:1219781/1‑140 (MQ=255)
                                                         tCTGAGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGc                                                                               >  1:941129/1‑140 (MQ=255)
                                                          cTGAGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGcc                                                                              <  1:548982/140‑1 (MQ=255)
                                                           tGAGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCt                                                                             <  1:1401891/140‑1 (MQ=255)
                                                            gAGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTg                                                                            <  1:43601/140‑1 (MQ=255)
                                                            gAGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTg                                                                            <  2:689057/140‑1 (MQ=255)
                                                            gAGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTg                                                                            <  1:755289/140‑1 (MQ=255)
                                                            gAGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTg                                                                            <  1:1521950/140‑1 (MQ=255)
                                                             aGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTgg                                                                           >  1:1515883/1‑140 (MQ=255)
                                                             aGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTgg                                                                           >  1:1925891/1‑140 (MQ=255)
                                                              gcgcTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGgt                                                                          >  2:802864/1‑140 (MQ=255)
                                                                 cTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGGtgtg                                                                       <  2:812542/140‑1 (MQ=255)
                                                                 cTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGGtgtg                                                                       <  1:875593/140‑1 (MQ=255)
                                                                   gcggcgTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGGTGTGCa                                                                     <  2:941129/140‑1 (MQ=255)
                                                                   gcggcgTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGGTGTGCa                                                                     <  1:2024235/140‑1 (MQ=255)
                                                                    cggcgTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGGTGTGCag                                                                    >  1:508966/1‑140 (MQ=255)
                                                                      gcgTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGGTGTGCagag                                                                  <  1:403573/140‑1 (MQ=255)
                                                                              cTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGGTGTGCAGAGCAGGATGa                                                          <  1:1132166/140‑1 (MQ=255)
                                                                                ggATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGGTGTGCAGAGCAGGATGAAg                                                        <  2:574996/140‑1 (MQ=255)
                                                                                   tAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGGTGTGCAGAGCAGGATGAAGGac                                                     <  1:1616255/140‑1 (MQ=255)
                                                                                   tAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGGTGTGCAGAGCAGGATGAAGGac                                                     >  2:1344349/1‑140 (MQ=255)
                                                                                      tGAATGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGGTGTGCAGAGCAGGATGAAGGactga                                                  >  1:131686/1‑140 (MQ=255)
                                                                                      tGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGGTGTGCAGAGCAGGATGAAGGactga                                                  >  2:1279478/1‑140 (MQ=255)
                                                                                      tGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGGTGTGCAGAGCAGGATGAAGGactga                                                  >  1:1166556/1‑140 (MQ=255)
                                                                                      tGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGGTGTGCAGAGCAGGATGAAGGactga                                                  >  1:1675117/1‑140 (MQ=255)
                                                                                        aaCGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGGTGTGCAGAGCAGGATGAAGGactgaaa                                                >  1:2062820/1‑140 (MQ=255)
                                                                                         aCGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGGTGTGCAGAGCAGGATGAAGGactgaaac                                               >  2:1157385/1‑140 (MQ=255)
                                                                                           gTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGGTGTGCAGAGCAGGATGAAGGactgaaactg                                             >  1:1260663/1‑140 (MQ=255)
                                                                                           gTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGGTGTGCAGAGCAGGATGAAGGactgaaactg                                             >  1:588501/1‑140 (MQ=255)
                                                                                           gTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGGTGTGCAGAGCAGGATGAAGGactgaaactg                                             >  1:2146815/1‑140 (MQ=255)
                                                                                                aaCAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGGTGTGCAGAGCAGGATGAAGGACTGAAACTGAATCt                                        >  1:1910593/1‑140 (MQ=255)
                                                                                                     gaagCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGGTGTGCAGAGCAGGATGAAGGACTGAAACTGAATCTTCAcc                                   <  2:1698532/140‑1 (MQ=255)
                                                                                                     gaagCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGGTGTGCAGAGCAGGATGAAGGACTGAAACTGAATCTTCAcc                                   >  1:1884988/1‑140 (MQ=255)
                                                                                                     gaagCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGGTGTGCAGAGCAGGATGAAGGACTGAAACTGAATCTTCAcc                                   >  1:1698532/1‑140 (MQ=255)
                                                                                                     gaagCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGGTGTGCAGAGCAGGATGAAGGACTGAAACTGAATCTTCAcc                                   >  2:376896/1‑140 (MQ=255)
                                                                                                        gCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGGTGTGCAGAGCAGGATGAAGGACTGAAACTGAATCTTCACCcgc                                >  2:284547/1‑140 (MQ=255)
                                                                                                          ttCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGGTGTGCAGAGCAGGATGAAGGACTGAAACTGAATCTTCACCcgcgc                              <  2:1630492/140‑1 (MQ=255)
                                                                                                          ttCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGGTGTGCAGAGCAGGATGAAGGACTGAAACTGAATCTTCACCcgcgc                              <  2:2146815/140‑1 (MQ=255)
                                                                                                          ttCAGCAGTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGGTGTGCAGAGCAGGATGAAGGACTGAAACTGAATCTTCACCcgcgc                              >  1:1833158/1‑140 (MQ=255)
                                                                                                                agTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGGTGTGCAGAGCAGGATGAAGGACTGAAACTGAATCTTCACCCGCGCGCCAGt                        <  1:2031363/140‑1 (MQ=255)
                                                                                                                agTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGGTGTGCAGAGCAGGATGAAGGACTGAAACTGAATCTTCACCCGCGCGCCAGt                        <  2:1166556/140‑1 (MQ=255)
                                                                                                                agTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGGTGTGCAGAGCAGGATGAAGGACTGAAACTGAATCTTCACCCGCGCGCCAGt                        <  2:131686/140‑1 (MQ=255)
                                                                                                                agTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGGTGTGCAGAGCAGGATGAAGGACTGAAACTGAATCTTCACCCGCGCGCCAGt                        <  2:1926545/140‑1 (MQ=255)
                                                                                                                 gTGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTTGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGGTGTGCAGAGCAGGATGAAGGACTGAAACTGAATCTTCACCCGCGCGCCAGTa                       <  2:246759/140‑1 (MQ=255)
                                                                                                                  tGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGGTGTGCAGAGCAGGATGAAGGACTGAAACTGAATCTTCACCCGCGCGCCAGTaa                      >  2:1659983/1‑140 (MQ=255)
                                                                                                                  tGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGGTGTGCAGAGCAGGATGAAGGACTGAAACTGAATCTTCACCCGCGCGCCAGTaa                      <  1:1593608/140‑1 (MQ=255)
                                                                                                                  tGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGGTGTGCAGAGCAGGATGAAGGACTGAAACTGAATCTTCACCCGCGCGCCAGTaa                      >  2:1593608/1‑140 (MQ=255)
                                                                                                                  tGGCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGGTGTGCAGAGCAGGATGAAGGACTGAAACTGAATCTTCACCCGCGCGCCAGTaa                      <  1:93013/140‑1 (MQ=255)
                                                                                                                   ggCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATGTGGAAGCCTGGTGTGCCGAGCAGGATGAAGGACTGAAACTGAATCTTCACCCGCGCGCCAGTAAc                     >  1:1968867/1‑140 (MQ=255)
                                                                                                                   ggCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGGTGTGCAGAGCAGGATGAAGGACTGAAACTGAATCTTCACCCGCGCGCCAGTAAc                     <  1:1877038/140‑1 (MQ=255)
                                                                                                                   ggCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGGTGTGCAGAGCAGGATGAAGGACTGAAACTGAATCTTCACCCGCGCGCCAGTAAc                     <  2:1375112/140‑1 (MQ=255)
                                                                                                                   ggCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGGTGTGCAGAGCAGGATGAAGGACTGAAACTGAATCTTCACCCGCGCGCCAGTAAc                     <  2:1867879/140‑1 (MQ=255)
                                                                                                                   ggCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGGTGTGCAGAGCAGGATGAAGGACTGAAACTGAATCTTCACCCGCGCGCCAGTAAc                     >  1:664190/1‑140 (MQ=255)
                                                                                                                    gCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGGTGTGCAGAGCAGGATGAAGGACTGAAACTGAATCTTCACCCGCGCGCCAGTAACa                    >  2:571032/1‑140 (MQ=255)
                                                                                                                    gCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGGTGTGCAGAGCAGGATGAAGGACTGAAACTGAATCTTCACCCGCGCGCCAGTAACa                    <  2:1260663/140‑1 (MQ=255)
                                                                                                                    gCAGAAGATTGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGGTGTGCAGAGCAGGATGAAGGACTGAAACTGAATCTTCACCCGCGCGCCAGTAACa                    >  1:767717/1‑140 (MQ=255)
                                                                                                                            ttGCAATTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGGTGTGCAGAGCAGGATGAAGGACTGAAACTGAATCTTCACCCGCGCGCCAGTAACAGCATCAAt            >  1:1700858/1‑140 (MQ=255)
                                                                                                                               aaaTTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGGTGTGCAGAGCAGGATGAAGGACTGAAACTGAATCTTCACCCGCGCGCCAGTAACAGCATCAATACg         <  2:712581/139‑1 (MQ=255)
                                                                                                                                 aTTGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGGTGTGCAGAGCAGGATGAAGGACTGAAACTGAATCTTCACCCGCGCGCCAGTAACAGCATCAATACGtt       <  1:1344349/140‑1 (MQ=255)
                                                                                                                                  ttGCTGCATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGGTGTGCAGAGCAGGATGAAGGACTGAAACTGAATCTTCACCCGCGCGCCAGTAACAGCATCAATACGTTg      <  2:2086812/140‑1 (MQ=255)
                                                                                                                                      tgcATGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGGTGTGCAGAGCAGGATGAAGGACTGAAACTGAATCTTCACCCGCGCGCCAGTAACAGCATCAATACGTTGCCGt  <  1:1694803/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                        
GAATTTACTATCCAGAAATCGATCGAACTCGGTGTAAGCCTCATTACGCCACTTTTTTCTGAGCGCTGCGGCGTTAAACTGGATAGTGAACGTCTGAACAAGAAGCTTCAGCAGTGGCAGAAGATTGCAATTGCTGCCTGTGAGCAGTGTGGTCGTAACCGGGTGCCGGAAATCCGTCCAGCGATGGATCTGGAAGCCTGGTGTGCAGAGCAGGATGAAGGACTGAAACTGAATCTTCACCCGCGCGCCAGTAACAGCATCAATACGTTGCCGT  >  NC_000913/3091410‑3091683

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A