Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,115,928	C→A	G1062V (GGA→GTA)	yghJ ←	putative lipoprotein YghJ

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,115,928	0	C	A	100.0%	398.4 / NA	117	G1062V (GGA→GTA)	yghJ	putative lipoprotein YghJ
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (66/51); total (66/51)

Only 100 of 122 total aligned reads displayed.

CGGTCACAGGAACGTTCGCATTGGACTTAATGGTGACCTCTTTCTGAGCCGGTGCCCACAGGCCAGTTGACTGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTCCCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGCCCAGCATCAGGCGTGTCAGCGGTTTTTCCATATAGTTGAGCGGGTAGCTCGGGTTCATCATGCC  >  NC_000913/3115791‑3116061

tggTCACAGGAACGTTCGCATTGGACTCAATGGTGACCTCTTTCTGAGCCGGTGCCCACAGGCCAGTTGACTGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTacc                                                                                                                                     <  2:1090493/139‑1 (MQ=255)

cGGTCACAGGAACGTTCGCATTGGACTTAATGGTGACCTCTTTCTGAGCCGGTGCCCACAGGCCAGTTGACTGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTacc                                                                                                                                     <  1:786230/140‑1 (MQ=255)

cGGTCACAGGAACGTTCGCATTGGACTTAATGGTGACCTCTTTCTGAGCCGGTGCCCACAGGCCAGTTGACTGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTacc                                                                                                                                     <  1:349270/140‑1 (MQ=255)

cGGTCACAGGAACGTTCGCATTGGACTTAATGGTGACCTCTTTCTGAGCCGGTGCCCACAGGCCAGTTGACTGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTacc                                                                                                                                     <  2:1336254/140‑1 (MQ=255)

cGGTCACAGGAACGTTCGCATTGGACTTAATGGTGACCTCTTTCTGAGCCGGTGCCCACAGGCCAGTTGACTGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTacc                                                                                                                                     <  2:441998/140‑1 (MQ=255)

          aaCGTTCGCATTGGACTTAATGGTGACCTCTTTCTGAGCCGGTGCCCACAGGCCAGTTGACTGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATa                                                                                                                           <  1:1840366/140‑1 (MQ=255)

           aCGTTCGCATTGGACTTAATGGTGACCTCTTTCTGAGCCGGTGCCCACAGGCTAGTTGACTGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATAc                                                                                                                          <  1:1862370/140‑1 (MQ=255)

                cGCATTGGACTTAATGGCGACCTCTTTCTGAGCCGGTGCCCACAGGCCAGTTGACTGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTc                                                                                                                     >  1:2002000/1‑140 (MQ=255)

                   aTTGGACTTAATGGTGACCTCTTTCTGAGCCGGTGCCCACAGGCCAGTTGACTGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCg                                                                                                                  >  1:1975817/1‑140 (MQ=255)

                     tGGACTTAATGGTGACCTCTTTCTGAGCCGGTGCCCACAGGCCAGTTGACTGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGa                                                                                                                <  1:721366/140‑1 (MQ=255)

                     tGGACTTAATGGTGACCTCTTTCTGAGCCGGTGCCCACAGGCCAGTTGACTGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGa                                                                                                                <  2:899732/140‑1 (MQ=255)

                            aaTGGTGACCTCTTTCTGAGCCGGTGCCCACAGGCCAGTTGACTGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTtct                                                                                                         >  2:683015/1‑140 (MQ=255)

                             aTGGTGACCTCTTTCTGAGCCGGTGCCCACAGGCCAGTTGACTGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTtctc                                                                                                        >  2:424279/1‑140 (MQ=255)

                               ggTGACCTCTTTCTGAGCCGGTGCCCACAGGCCAGTTGACTGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGa                                                                                                      <  1:1452690/140‑1 (MQ=255)

                                 tGACCTCTTTCTGAGCCGGTGCCCACAGGCCAGTTGACTGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACa                                                                                                    >  2:825296/1‑140 (MQ=255)

                                 tGACCTCTTTCTGAGCCGGTGCCCACAGGCCAGTTGACTGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACa                                                                                                    >  2:1019685/1‑140 (MQ=255)

                                 tGACCTCTTTCTGAGCCGGTGCCCACAGGCCAGTTGACTGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACa                                                                                                    >  1:945013/1‑140 (MQ=255)

                                  gACCTCTTTCTGAGCCGGTGCCCACAGGCCAGTTGACTGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACAt                                                                                                   >  1:1501387/1‑140 (MQ=255)

                                  gACCTCTTTCTGAGCCGGTGCCCACAGGCCAGTTGACTGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACAt                                                                                                   <  1:431912/140‑1 (MQ=255)

                                   aCCTCTTTCTGAGCCGGTGCCCACAGGCCAGTTGACTGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATc                                                                                                  >  2:1650132/1‑140 (MQ=255)

                                    ccTCTTTCTGAGCCGGTGCCCACAGGCGAGTTGACTGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCa                                                                                                 >  1:1745260/1‑140 (MQ=255)

                                    ccTCTTTCTGAGCCGGTGCCCACAGGCCAGTTGACTGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCa                                                                                                 >  2:280920/1‑140 (MQ=255)

                                     ctctTTCTGAGCCGGTGCCCACAGGCCAGTTGACTGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCaa                                                                                                <  1:452106/140‑1 (MQ=255)

                                       ctTTCTGAGCCGGTGCCCACAGGCCAGTTGACTGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACt                                                                                              <  1:2025009/140‑1 (MQ=255)

                                        tttCTGAGCCGGTGCCCACAGGCCAGTTGACTGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACtt                                                                                             <  1:1331034/140‑1 (MQ=255)

                                        tttCTGAGCCGGTGCCCACAGGCCAGTTGACTGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACtt                                                                                             >  2:1784160/1‑140 (MQ=255)

                                        tttCTGAGCCGGTGCCCACAGGCCAGTTGACTGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACtt                                                                                             >  2:1265306/1‑140 (MQ=255)

                                          tCTGAGCCGGTGCCCACAGGCCAGTTGACTGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTg                                                                                           <  2:1623117/140‑1 (MQ=255)

                                               gCCGGTGCCCACAGGCCAGTTGACTGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGtt                                                                                      <  1:113807/140‑1 (MQ=255)

                                               gCCGGTGCCCACAGGCCAGTTGACTGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGtt                                                                                      <  1:1265306/140‑1 (MQ=255)

                                                  ggTGCCCACAGGCCAGTTGACTGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTTAg                                                                                   >  2:1771581/1‑140 (MQ=255)

                                                  ggTGCCCACAGGCCAGTTGACTGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAg                                                                                   >  1:475852/1‑140 (MQ=255)

                                                  ggTGCCCACAGGCCAGTTGACTGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAg                                                                                   >  2:1320835/1‑140 (MQ=255)

                                                   gTGCCCACAGGCCAGTTGACTGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGa                                                                                  >  1:2069128/1‑140 (MQ=255)

                                                   gTGCCCACAGGCCAGTTGACTGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGa                                                                                  <  1:1551225/140‑1 (MQ=255)

                                                    tGCCCACAGGCCAGTTGACTGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGAt                                                                                 <  2:1711299/140‑1 (MQ=255)

                                                    tGCCCACAGGCCAGTTGACTGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGAt                                                                                 >  2:194896/1‑140 (MQ=255)

                                                             gCCAGTTGACTGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAgg                                                                        >  1:1309414/1‑140 (MQ=255)

                                                              ccAGTTGACTGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGGACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGa                                                                       >  2:260423/1‑140 (MQ=255)

                                                               cAGTTGTCTGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGaa                                                                      <  1:1992268/140‑1 (MQ=255)

                                                               cAGTTGGCTGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGaa                                                                      <  1:2131806/140‑1 (MQ=255)

                                                                aGTTGACTGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAAc                                                                     >  1:418542/1‑140 (MQ=255)

                                                                aGTTGACTGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAAc                                                                     <  1:825296/140‑1 (MQ=255)

                                                                aGTTGACTGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAAc                                                                     >  2:297821/1‑140 (MQ=255)

                                                                 gTTGACTGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACg                                                                    >  2:695846/1‑140 (MQ=255)

                                                                   tGACTGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGc                                                                  <  2:942221/140‑1 (MQ=255)

                                                                   tGACTGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGc                                                                  <  1:691663/140‑1 (MQ=255)

                                                                   tGACTGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGc                                                                  >  1:1203764/1‑140 (MQ=255)

                                                                       tGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGCCCAg                                                              >  2:1675368/1‑140 (MQ=255)

                                                                       tGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGCCCAg                                                              >  2:1755058/1‑140 (MQ=255)

                                                                         cATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGCCCAGCa                                                            <  2:418542/140‑1 (MQ=255)

                                                                           tGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGCCCAGCATc                                                          >  1:1028596/1‑140 (MQ=255)

                                                                           tGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGCCCAGCATc                                                          >  1:759447/1‑140 (MQ=255)

                                                                            gTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGCCCAGCATCa                                                         >  2:1969546/1‑140 (MQ=255)

                                                                            gTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGCCCAGCATCa                                                         >  2:52160/1‑140 (MQ=255)

                                                                               aCCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGCCCAGCATCAGGc                                                      >  2:1717667/1‑140 (MQ=255)

                                                                                ccTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGCCCAGCATCAGGct                                                     >  2:570784/1‑139 (MQ=255)

                                                                                 cTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGCCCAGCATCAGGCgt                                                    <  1:1784160/140‑1 (MQ=255)

                                                                                   gCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGCCCAGCATCAGGCgtgt                                                  >  2:684362/1‑140 (MQ=255)

                                                                                   gCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGCCCAGCATCAGGCgtgt                                                  >  1:304434/1‑140 (MQ=255)

                                                                                   gCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGCCCAGCATCAGGCgtgt                                                  >  2:85443/1‑140 (MQ=255)

                                                                                     aaaCCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGCCCAGCATCAGGCGTGTCa                                                <  2:1028596/140‑1 (MQ=255)

                                                                                     aaaCCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGCCCAGCATCAGGCGTGTCa                                                >  1:862535/1‑140 (MQ=255)

                                                                                       aCCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGCCCAGCATCAGGCGTGTCAGc                                              >  2:1727189/1‑140 (MQ=255)

                                                                                       aCCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGCCCAGCATCAGGCGTGTCAGc                                              <  2:2069128/140‑1 (MQ=255)

                                                                                         cATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGCCCAGCATCAGGCGTGTCAGCgg                                            <  1:288351/140‑1 (MQ=255)

                                                                                           tttGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTAATGTTCAGATCCCACCAGGAACGGCCCAGCATCAGGCGTGTCAGCGGtt                                          <  2:1713414/140‑1 (MQ=255)

                                                                                            ttGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTTAGATCCCACCAGGAACGGCCCAGCATCAGGCGTGTCAGCGGttt                                         <  1:1771581/140‑1 (MQ=255)

                                                                                            ttGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGCCCAGCATCAGGCGTGTCAGCGGttt                                         <  1:1755058/140‑1 (MQ=255)

                                                                                            ttGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGCCCAGCATCAGGCGTGTCAGCGGttt                                         <  2:1309414/140‑1 (MQ=255)

                                                                                              ggTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGCCCAGCATCAGGCGTGTCAGCGGttttt                                       <  2:1436446/140‑1 (MQ=255)

                                                                                              ggTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGCCCAGCATCAGGCGTGTCAGCGGttttt                                       <  1:297821/140‑1 (MQ=255)

                                                                                              ggTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGCCCAGCATCAGGCGTGTCAGCGGttttt                                       <  1:348369/140‑1 (MQ=255)

                                                                                              ggTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGCCCAGCATCAGGCGTGTCAGCGGttt                                         >  2:289325/1‑138 (MQ=255)

                                                                                               gTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGCCCAGCATCAGGCGTGTCAGCGGTTTTTc                                      >  1:2122987/1‑140 (MQ=255)

                                                                                                 cGGATTCGAGTACTGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGCCCAGCATCAGGCGTGTCAGCGGTTTTTCCa                                    <  2:448139/140‑1 (MQ=255)

                                                                                                   gATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGCCCAGCATCAGGCGTGTCAGCGGTTTTTCCatt                                  >  2:1268572/1‑139 (MQ=255)

                                                                                                   gATTCGAGTACAGGCTCATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGACCTCACCAGGAACGGCCCAGCATCAGGCGAGTCAGCGGTTTTTCCata                                  >  2:1882962/1‑140 (MQ=255)

                                                                                                          gTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGCCCAGCATCAGGCGTGTCAGCGGTTTTTCCATATAGTTGa                           >  2:286031/1‑140 (MQ=255)

                                                                                                          gTACAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGCCCAGCATCAGGCGTGTCAGCGGTTTTTCCATATAGTTGa                           <  1:1320835/140‑1 (MQ=255)

                                                                                                             cAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGCCCAGCATCAGGCGTGTCAGCGGTTTTTCCATATAGTTGAGCg                        <  1:683015/140‑1 (MQ=255)

                                                                                                             cAGGCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGCCCAGCATCAGGCGTGTCAGCGGTTTTTCCATATAGTTGAGCg                        <  1:575662/140‑1 (MQ=255)

                                                                                                               ggCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGCCCAGCATCAGGCGTGTCAGCGGTTTTTCCATATAGTTGAGCggg                      <  1:1675368/140‑1 (MQ=255)

                                                                                                                gCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGCCCAGCATCAGGCGTGTCTGCGGTTTTTCCATATAGTTGAGCGGGt                     >  2:1101890/1‑140 (MQ=255)

                                                                                                                gCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGCCCAGCATCAGGCGTGTCAGCGGTTTTTCCATATAGTTGAGCGGGt                     >  2:229957/1‑140 (MQ=255)

                                                                                                                gCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGCCCAGCATCAGGCGTGTCAGCGGTTTTTCCATATAGTTGAGCGGGt                     >  2:711835/1‑140 (MQ=255)

                                                                                                                gCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGCCCAGCATCAGGCGTGTCAGCGGTTTTTCCATATAGTTGAGCGGGt                     >  1:1680237/1‑140 (MQ=255)

                                                                                                                gCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGCCCAGCATCAGGCGTGTCAGCGGTTTTTCCATATAGTTGAGCGGGt                     >  2:1427822/1‑140 (MQ=255)

                                                                                                                gCTGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGCCCAGCATCAGGCGTGTCAGCGGTTTTTCCATATAGTTGAGCGGGt                     >  2:616469/1‑140 (MQ=255)

                                                                                                                  tGATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGCCCAGCATCAGGCGTGTCAGCGGTTTTTCCATATAGTTGAGCGGGTAg                   >  1:186283/1‑140 (MQ=255)

                                                                                                                   gATGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGCCCAGCATCAGGCGTGTCAGCGGTTTTTCCATATAGTTGAGCGGGTAGc                  <  1:1717667/140‑1 (MQ=255)

                                                                                                                    aTGGTTTCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGCCCAGCATCAGGCGTGTCAGCGGTTTTTCCATATAGTTGAGCGGGTAGCt                 <  2:304434/140‑1 (MQ=255)

                                                                                                                         ttCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGCCCAGCATCAGGCGTGTCAGCGGTTTTTCCATATAGTTGAGCGGGTAGCTCGGGt            <  1:711835/140‑1 (MQ=255)

                                                                                                                          tCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGCCCAGCATCAGGCGTGTCAGCGGTTTTTCCATATAGTTGAGCGGGTAGCTCGGGtt           >  1:1853308/1‑140 (MQ=255)

                                                                                                                          tCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGCCCAGCATCAGGCGTGTCAGCGGTTTTTCCATATAGTTGAGCGGGTAGCTCGGGtt           >  1:69516/1‑140 (MQ=255)

                                                                                                                          tCAGTAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGCCCAGCATCAGGCGTGTCAGCGGTTTTTCCATATAGTTGAGCGGGTAGCTCGGGtt           >  1:1070249/1‑140 (MQ=255)

                                                                                                                              tAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCGGATCCCACCAGGAACGGCCCAGCATCAGGCGTGTCAGCGGTTTTTCCATATAGTTGAGCGGGTAGCTCGGGTtcatc       >  2:1832880/1‑140 (MQ=255)

                                                                                                                              tAACGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGCCCAGCATCAGGCGTGTCAGCGGTTTTTCCATATAGTTGAGCGGGTAGCTCGGGTtcatc       >  2:1949331/1‑140 (MQ=255)

                                                                                                                                 cGTTCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGCCCAGCATCAGGCGTGTCAGCGGTTTTTCCATATAGTTGAGCGGGTAGCTCGGGTTCATCATg    >  1:218943/1‑140 (MQ=255)

                                                                                                                                   ttCTGTACCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGCCCAGCATCAGGCGTGTCAGCGGTTTTTCCATATAGTTGAGCGGGTAGCTCGGGTTCATCATGcc  >  1:1647750/1‑140 (MQ=255)

CGGTCACAGGAACGTTCGCATTGGACTTAATGGTGACCTCTTTCTGAGCCGGTGCCCACAGGCCAGTTGACTGCATGTTACCTGCAAACCATTTGGTCGGATTCGAGTACAGGCTGATGGTTTCAGTAACGTTCTGTCCCTCTTCCGATACTGCTCCCGGATACTTCTCGACATCAACTTTGATGTTCAGATCCCACCAGGAACGGCCCAGCATCAGGCGTGTCAGCGGTTTTTCCATATAGTTGAGCGGGTAGCTCGGGTTCATCATGCC  >  NC_000913/3115791‑3116061

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A